RLG00000017449

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
16913037 .. 16914702
1666 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017449

Sequence Viewer

Length: 1380 bp
ATGGTCGACGTCGATCGGAGAATGACCGGCCTCAACCCGGCCCACGTCGCCGGCCTCCGCCGCCTCTCCGCCCGAGCCGCCGCCGCCCCAACAACTCCCTCCAACACCAAACCCTCCCTCCCTGTACGCAACGGCCTCCTCTCATATTCCTCCCTGGCCGAGAATCTCATCACCCACCTTAAAACTTCCGGTATCCAAGTCCAGCCGGGTCTGTCCGAACCCGAATTCGCCCGCGCAGAGGCCGAGTTCGGCTTCGCATTCCCGCCCGACCTCAAAGCCGTTCTCTCCGCCGGCCTTCCGGTGGGCCCAGGTTTCCCAGATTGGCGCGCACCCGGTGCTCGCCTCCACCTCAAGGCCTCGCTGGACCTCCCCATCGCCGCGATTTCGTTCCAAATTGCCCGGAATACCCTCTGGTCCAAGTCGTGGGGTCCGAGACCGTCCGACCCGGAAAAGGCCCTCCGGGTCGCGAGGACCGCCTTGAAAAGAGCGCCGCTTTTGATACCCATTTTCAACCATTGCTACATTCCTTGCAACCCTTGCCTCGCCGGAAACCCCATCTTCTTCGTCGACGAGAATCGGATCTTCTGCTGCGGGTTGGATCTATCCGACTTCTTCGAGCGTGAGTCGGTTTTCCGGAAATCCGACTCCGACCCGTACATCCTCAAGAAGCAACGATCCGTCAGCGAAAAATCCGCCGGGTCGTCCGCTAATTTTTCTCGCCGGAGCCTCGACACGGGTCTCGGGTCCGGAGCCGCCAGAACCCCGAGATGGGTCGAGTTCTGGAGCGACGCCGCCGTGGACCGTCGCCGGAGAAACTCCTCATCATCCTCGTGTTCCTCGCCGGACAGGCTATTCGATTTGCCGAGATCCGAATCCCCGAAATGGGTCGACGACTACATTGATCAGATAGGATCCGCTTTGAAACTGGGCGGGTGGTCCGACTCGGATATATCGGATATCGTATCGGTTTCCGCGTCCGGGTTTTTCGAAGGCGAGATGGTCATGTTGGACAACCAAGCCGTGCTGGACGCTCTGCTGCTCAAAGCGGACCGGTTCTCGGACTCGCTCCGAATGGCCGGGTGGAGCTCCGAGGAAGTATCCGACGCGCTGGGTTTCAATTTTCGCGCGGAGAAGGAGAAGAAACCGGCGAAGAAGCTGTCCCCGGAGCTCGTGGAAAGAATCGGGAAACTGGCCGAGTCGGTTTCCCGATTATTAGTATTTGGGCTCTGGTTTCTAAATGGAATTGCACGTGTGGTTTCTTTGTGCGCTCTCCTGCAACAAGACGACGACGTTCTCGGGAAGGTGAGATCCAATCACGACTCGGCCCGCGTGGGACAGGATGATGTGATTCAACGAACCAGACGGCACAGCGCGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

460

Amino Acids

50.36

Weight (kDa)

8.91

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014002)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 423
AccI GTMKAC 3 cut(s) 6, 567, 888
AccIII TCCGGA 2 cut(s) 633, 746
AclWI GGATC 7 cut(s) 587, 606, 669, 861, 906, 919, 1302
AcoI YGGCCR 3 cut(s) 156, 1074, 1191
AcsI RAATTY 1 cut(s) 224
AcvI CACGTG 1 cut(s) 1250
AcyI GRCGYC 2 cut(s) 9, 789
AdeI CACNNNGTG 1 cut(s) 335
AfaI GTAC 2 cut(s) 126, 656
AflIII ACRYGT 1 cut(s) 1249
AgeI ACCGGT 1 cut(s) 1050
AgsI TTSAA 5 cut(s) 481, 511, 922, 1117, 1352
AjiI CACGTC 1 cut(s) 46
AjnI CCWGG 2 cut(s) 153, 307
AluBI AGCT 3 cut(s) 1086, 1156, 1168
AluI AGCT 3 cut(s) 1086, 1156, 1168
Alw21I GWGCWC 3 cut(s) 340, 1088, 1170
Alw26I GTCTC 2 cut(s) 427, 743
AlwI GGATC 7 cut(s) 587, 606, 669, 861, 906, 919, 1302
Ama87I CYCGRG 4 cut(s) 72, 740, 763, 1295
Aor13HI TCCGGA 2 cut(s) 633, 746
ApaI GGGCCC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 588, 1036
ApoI RAATTY 1 cut(s) 224
ArsI GACNNNNNNTTYG 4 cut(s) 836, 868, 1142, 1174
AsiGI ACCGGT 1 cut(s) 1050
AspLEI GCGC 8 cut(s) 236, 327, 329, 490, 1108, 1127, 1268, 1373
AsuHPI GGTGA 2 cut(s) 163, 1315
AsuII TTCGAA 1 cut(s) 987
AvaI CYCGRG 4 cut(s) 72, 740, 763, 1295
AvaII GGWCC 8 cut(s) 364, 414, 428, 471, 744, 799, 936, 1048
BaeGI GKGCMC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 911
BanII GRGCYC 4 cut(s) 308, 1088, 1170, 1227
BauI CACGAG 2 cut(s) 829, 1169
BbrPI CACGTG 1 cut(s) 1250
Bbv12I GWGCWC 3 cut(s) 340, 1088, 1170
BbvI GCAGC 2 cut(s) 575, 1023
BccI CCATC 4 cut(s) 380, 563, 762, 991
BceAI ACGGC 4 cut(s) 148, 263, 779, 1004
BciT130I CCWGG 2 cut(s) 155, 309
BciVI GTATCC 2 cut(s) 203, 1108
BclI TGATCA 1 cut(s) 901
BcoDI GTCTC 2 cut(s) 427, 743
BfoI RGCGCY 1 cut(s) 491
BfuI GTATCC 2 cut(s) 203, 1108
BglI GCCNNNNNGGC 1 cut(s) 847
Bme18I GGWCC 8 cut(s) 364, 414, 428, 471, 744, 799, 936, 1048
BmeT110I CYCGRG 4 cut(s) 72, 740, 763, 1295
BmgBI CACGTC 1 cut(s) 46
BmiI GGNNCC 6 cut(s) 306, 429, 725, 745, 751, 913
BmrI ACTGGG 1 cut(s) 935
BmuI ACTGGG 1 cut(s) 935
BoxI GACNNNNGTC 1 cut(s) 735
BpmI CTGGAG 1 cut(s) 802
Bpu14I TTCGAA 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 335, 647
BsaAI YACGTR 1 cut(s) 1250
BsaBI GATNNNNATC 1 cut(s) 871
BsaHI GRCGYC 2 cut(s) 9, 789
BsaI GGTCTC 2 cut(s) 427, 743
BsaJI CCNNGG 5 cut(s) 153, 307, 795, 1089, 1161
BsaWI WCCGGW 5 cut(s) 188, 298, 633, 746, 1050
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bse118I RCCGGY 5 cut(s) 26, 50, 290, 1050, 1144
Bse1I ACTGG 2 cut(s) 930, 1194
Bse3DI GCAATG 1 cut(s) 514
Bse8I GATNNNNATC 1 cut(s) 871
BseAI TCCGGA 2 cut(s) 633, 746
BseBI CCWGG 2 cut(s) 155, 309
BseDI CCNNGG 5 cut(s) 153, 307, 795, 1089, 1161
BseGI GGATG 3 cut(s) 657, 824, 1345
BseJI GATNNNNATC 1 cut(s) 871
BseMI GCAATG 1 cut(s) 514
BseNI ACTGG 2 cut(s) 930, 1194
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 2 cut(s) 128, 808
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 575, 1023
BseYI CCCAGC 1 cut(s) 1108
Bsh1285I CGRYCG 1 cut(s) 16
BshTI ACCGGT 1 cut(s) 1050
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 3 cut(s) 340, 1088, 1170
BsiHKCI CYCGRG 4 cut(s) 72, 740, 763, 1295
BslFI GGGAC 2 cut(s) 1144, 1347
BsmAI GTCTC 2 cut(s) 427, 743
BsmFI GGGAC 2 cut(s) 1144, 1347
BsmI GAATGC 1 cut(s) 257
Bso31I GGTCTC 2 cut(s) 427, 743
BsoBI CYCGRG 4 cut(s) 72, 740, 763, 1295
Bsp119I TTCGAA 1 cut(s) 987
Bsp120I GGGCCC 1 cut(s) 304
Bsp1286I GDGCHC 5 cut(s) 308, 340, 1088, 1170, 1227
Bsp13I TCCGGA 2 cut(s) 633, 746
Bsp143I GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
Bsp68I TCGCGA 1 cut(s) 467
BspEI TCCGGA 2 cut(s) 633, 746
BspLI GGNNCC 6 cut(s) 306, 429, 725, 745, 751, 913
BspPI GGATC 7 cut(s) 587, 606, 669, 861, 906, 919, 1302
BspT104I TTCGAA 1 cut(s) 987
BspTNI GGTCTC 2 cut(s) 427, 743
BsrDI GCAATG 1 cut(s) 514
BsrFI RCCGGY 5 cut(s) 26, 50, 290, 1050, 1144
BsrI ACTGG 2 cut(s) 930, 1194
BssAI RCCGGY 5 cut(s) 26, 50, 290, 1050, 1144
BssECI CCNNGG 5 cut(s) 153, 307, 795, 1089, 1161
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
BssNI GRCGYC 2 cut(s) 9, 789
BssSI CACGAG 2 cut(s) 829, 1169
Bst2BI CACGAG 2 cut(s) 829, 1169
Bst2UI CCWGG 2 cut(s) 155, 309
Bst4CI ACNGT 2 cut(s) 438, 803
BstACI GRCGYC 2 cut(s) 9, 789
BstAPI GCANNNNNTGC 2 cut(s) 335, 537
BstBAI YACGTR 1 cut(s) 1250
BstBI TTCGAA 1 cut(s) 987
BstC8I GCNNGC 6 cut(s) 52, 232, 292, 327, 340, 1327
BstDSI CCRYGG 1 cut(s) 795
BstF5I GGATG 3 cut(s) 657, 824, 1345
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 8 cut(s) 236, 327, 329, 490, 1108, 1127, 1268, 1373
BstKTI GATC 8 cut(s) 16, 582, 601, 677, 869, 904, 914, 1310
BstMAI GTCTC 2 cut(s) 427, 743
BstMBI GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 8 cut(s) 47, 60, 77, 83, 335, 473, 537, 847
BstNI CCWGG 2 cut(s) 155, 309
BstPAI GACNNNNGTC 1 cut(s) 735
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 575, 1023
BstX2I RGATCY 5 cut(s) 579, 598, 866, 911, 1307
BstYI RGATCY 5 cut(s) 579, 598, 866, 911, 1307
BsuI GTATCC 2 cut(s) 203, 1108
BtgI CCRYGG 1 cut(s) 795
BtgZI GCGATG 1 cut(s) 358
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 3 cut(s) 657, 824, 1345
BtuMI TCGCGA 1 cut(s) 467
Cac8I GCNNGC 6 cut(s) 52, 232, 292, 327, 340, 1327
CfoI GCGC 8 cut(s) 236, 327, 329, 490, 1108, 1127, 1268, 1373
Cfr10I RCCGGY 5 cut(s) 26, 50, 290, 1050, 1144
CpoI CGGWCCG 1 cut(s) 1048
CseI GACGC 4 cut(s) 797, 963, 1037, 1112
Csp6I GTAC 2 cut(s) 125, 655
CspAI ACCGGT 1 cut(s) 1050
CspI CGGWCCG 1 cut(s) 1048
CviAII CATG 1 cut(s) 1003
CviQI GTAC 2 cut(s) 125, 655
DpnI GATC 8 cut(s) 15, 581, 600, 676, 868, 903, 913, 1309
DpnII GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
DraIII CACNNNGTG 1 cut(s) 335
EaeI YGGCCR 3 cut(s) 156, 1074, 1191
EciI GGCGGA 4 cut(s) 47, 58, 277, 682
Ecl136II GAGCTC 2 cut(s) 1086, 1168
Eco147I AGGCCT 1 cut(s) 356
Eco24I GRGCYC 4 cut(s) 308, 1088, 1170, 1227
Eco31I GGTCTC 2 cut(s) 427, 743
Eco32I GATATC 1 cut(s) 958
Eco47I GGWCC 8 cut(s) 364, 414, 428, 471, 744, 799, 936, 1048
Eco53kI GAGCTC 2 cut(s) 1086, 1168
Eco72I CACGTG 1 cut(s) 1250
Eco88I CYCGRG 4 cut(s) 72, 740, 763, 1295
EcoICRI GAGCTC 2 cut(s) 1086, 1168
EcoO109I RGGNCCY 1 cut(s) 454
EcoRI GAATTC 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 153, 307
EcoRV GATATC 1 cut(s) 958
EcoT38I GRGCYC 4 cut(s) 308, 1088, 1170, 1227
FaeI CATG 1 cut(s) 1006
FaiI YATR 3 cut(s) 145, 950, 1004
FaqI GGGAC 2 cut(s) 1144, 1347
FatI CATG 1 cut(s) 1002
FauI CCCGC 5 cut(s) 239, 270, 584, 923, 1334
FbaI TGATCA 1 cut(s) 901
FblI GTMKAC 3 cut(s) 6, 567, 888
FokI GGATG 3 cut(s) 644, 811, 1352
FriOI GRGCYC 4 cut(s) 308, 1088, 1170, 1227
GlaI GCGC 8 cut(s) 235, 326, 328, 489, 1107, 1126, 1267, 1372
GsaI CCCAGC 1 cut(s) 1112
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 1 cut(s) 491
HgaI GACGC 4 cut(s) 797, 963, 1037, 1112
HhaI GCGC 8 cut(s) 236, 327, 329, 490, 1108, 1127, 1268, 1373
Hin1I GRCGYC 2 cut(s) 9, 789
Hin1II CATG 1 cut(s) 1006
Hin6I GCGC 8 cut(s) 234, 325, 327, 488, 1106, 1125, 1266, 1371
HinP1I GCGC 8 cut(s) 234, 325, 327, 488, 1106, 1125, 1266, 1371
HincII GTYRAC 3 cut(s) 7, 568, 889
HindII GTYRAC 3 cut(s) 7, 568, 889
HphI GGTGA 2 cut(s) 163, 1315
Hpy166II GTNNAC 4 cut(s) 7, 568, 799, 889
Hpy188III TCNNGA 9 cut(s) 466, 634, 664, 747, 781, 1183, 1206, 1297, 1316
Hpy8I GTNNAC 4 cut(s) 7, 568, 799, 889
HpyAV CCTTC 4 cut(s) 305, 983, 1126, 1294
HpyCH4III ACNGT 2 cut(s) 438, 803
HpyCH4IV ACGT 4 cut(s) 9, 45, 1249, 1290
HpyCH4V TGCA 3 cut(s) 531, 1247, 1276
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 60, 77, 83, 335, 473, 537, 847
HpySE526I ACGT 4 cut(s) 9, 45, 1249, 1290
Hsp92I GRCGYC 2 cut(s) 9, 789
Hsp92II CATG 1 cut(s) 1006
HspAI GCGC 8 cut(s) 234, 325, 327, 488, 1106, 1125, 1266, 1371
Kpn2I TCCGGA 2 cut(s) 633, 746
KroI GCCGGC 2 cut(s) 50, 290
KroNI GCCGGC 2 cut(s) 52, 292
Ksp22I TGATCA 1 cut(s) 901
Kzo9I GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
LmnI GCTCC 7 cut(s) 723, 749, 783, 1071, 1083, 1091, 1165
Lsp1109I GCAGC 2 cut(s) 575, 1023
MaeII ACGT 4 cut(s) 9, 45, 1249, 1290
MalI GATC 8 cut(s) 15, 581, 600, 676, 868, 903, 913, 1309
MboI GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
MboII GAAGA 6 cut(s) 550, 553, 574, 604, 1150, 1162
MflI RGATCY 5 cut(s) 579, 598, 866, 911, 1307
MhlI GDGCHC 5 cut(s) 308, 340, 1088, 1170, 1227
MluCI AATT 5 cut(s) 224, 393, 709, 1117, 1242
MlyI GAGTC 6 cut(s) 632, 638, 935, 1055, 1205, 1313
MmeI TCCRAC 9 cut(s) 126, 465, 576, 630, 666, 672, 963, 987, 1125
MroI TCCGGA 2 cut(s) 633, 746
MroNI GCCGGC 2 cut(s) 50, 290
MseI TTAA 1 cut(s) 180
MslI CAYNNNNRTG 1 cut(s) 829
Mva1269I GAATGC 1 cut(s) 257
MvaI CCWGG 2 cut(s) 155, 309
MwoI GCNNNNNNNGC 8 cut(s) 47, 60, 77, 83, 335, 473, 537, 847
NaeI GCCGGC 2 cut(s) 52, 292
NdeII GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
NgoMIV GCCGGC 2 cut(s) 50, 290
NlaIII CATG 1 cut(s) 1006
NlaIV GGNNCC 6 cut(s) 306, 429, 725, 745, 751, 913
NmeAIII GCCGAG 5 cut(s) 184, 268, 888, 1219, 1301
NruI TCGCGA 1 cut(s) 467
NspV TTCGAA 1 cut(s) 987
PauI GCGCGC 1 cut(s) 325
PceI AGGCCT 1 cut(s) 356
PcsI WCGNNNNNNNCGW 2 cut(s) 428, 971
PctI GAATGC 1 cut(s) 257
PdiI GCCGGC 2 cut(s) 52, 292
PfeI GAWTC 5 cut(s) 163, 574, 872, 1179, 1348
PflMI CCANNNNNTGG 1 cut(s) 423
PinAI ACCGGT 1 cut(s) 1050
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 6 cut(s) 631, 638, 935, 1055, 1204, 1313
PmaCI CACGTG 1 cut(s) 1250
PmlI CACGTG 1 cut(s) 1250
PpsI GAGTC 6 cut(s) 631, 638, 935, 1055, 1204, 1313
Ppu21I YACGTR 1 cut(s) 1250
PshAI GACNNNNGTC 1 cut(s) 735
Psp124BI GAGCTC 2 cut(s) 1088, 1170
Psp6I CCWGG 2 cut(s) 153, 307
PspCI CACGTG 1 cut(s) 1250
PspFI CCCAGC 1 cut(s) 1108
PspGI CCWGG 2 cut(s) 153, 307
PspN4I GGNNCC 6 cut(s) 306, 429, 725, 745, 751, 913
PspOMI GGGCCC 1 cut(s) 304
PsuI RGATCY 5 cut(s) 579, 598, 866, 911, 1307
PteI GCGCGC 1 cut(s) 325
PvuI CGATCG 1 cut(s) 16
RruI TCGCGA 1 cut(s) 467
RsaI GTAC 2 cut(s) 126, 656
RsaNI GTAC 2 cut(s) 125, 655
RseI CAYNNNNRTG 1 cut(s) 829
Rsr2I CGGWCCG 1 cut(s) 1048
RsrII CGGWCCG 1 cut(s) 1048
SacI GAGCTC 2 cut(s) 1088, 1170
SalI GTCGAC 3 cut(s) 5, 566, 887
SaqAI TTAA 1 cut(s) 180
Sau3AI GATC 8 cut(s) 13, 579, 598, 674, 866, 901, 911, 1307
SchI GAGTC 6 cut(s) 632, 638, 935, 1055, 1205, 1313
SduI GDGCHC 5 cut(s) 308, 340, 1088, 1170, 1227
SfuI TTCGAA 1 cut(s) 987
SgrDI CGTCGACG 1 cut(s) 566
SinI GGWCC 8 cut(s) 364, 414, 428, 471, 744, 799, 936, 1048
SmiMI CAYNNNNRTG 1 cut(s) 829
SmlI CTYRAG 2 cut(s) 350, 662
SmoI CTYRAG 2 cut(s) 350, 662
Sse9I AATT 5 cut(s) 224, 393, 709, 1117, 1242
SseBI AGGCCT 1 cut(s) 356
SstI GAGCTC 2 cut(s) 1088, 1170
StuI AGGCCT 1 cut(s) 356
TaaI ACNGT 2 cut(s) 438, 803
TaiI ACGT 4 cut(s) 12, 48, 1252, 1293
TaqI TCGA 9 cut(s) 6, 12, 567, 615, 729, 774, 855, 888, 987
TasI AATT 5 cut(s) 224, 393, 709, 1117, 1242
TauI GCSGC 8 cut(s) 63, 80, 83, 86, 380, 493, 755, 794
TfiI GAWTC 5 cut(s) 163, 574, 872, 1179, 1348
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 588, 1036
TspGWI ACGGA 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 423
VpaK11BI GGWCC 8 cut(s) 364, 414, 428, 471, 744, 799, 936, 1048
XapI RAATTY 1 cut(s) 224
XmiI GTMKAC 3 cut(s) 6, 567, 888
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.