Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

26955568 .. 26957774

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G67580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGGTGCACCAAAGCAGAAGTGGACACCGGAAGAAGAAGCAGCTCTTAAAGCTGGAGTTCTTAAGCATGGGACTGGGAAGTGGCGTACCATACTCTCGGATACTGAGTTTAGTTTAATCCTTAAGTCTCGCTCTAATGTTGATCTTAAGGACAAATGGAGAAATATAAGCGTGACAGCTTTATGGGGTTCAAGGAAGAAGGCTAAACTTGCGCTTAAGAGGACTCCACCAGGTACTAAACAGGATGATAACAACACAGCTCTTACCATTGTGGCTTTGACTAATGATGATGAACGTGCAAAACCAACTTCCCCCGGAGGTTCTGGTGGTGGATCACCACGCACTTGTGCTTCTAAGAGATCAATTACAAGTTTGGATAAGATCATCTTTGAGGCAATTACCAACTTGAGGGAACTACGCGGTTCTGACAGAACATCAATCTTTCTGTATATAGAGGAGAATTTCAAGACTCCACCGAATATGAAAAGGCATGTCGCAGTACGATTAAAGCATTTATCATCGAATGGAACATTAGTTAAGATAAAGCACAAGTACAGGTTTTCTTCTAATTTTATTCCCGCAGGTGCAAGACAGAAGGCTCCTCAACTCTTTCTGGAAGGAAACAACAAGAAAGACCCAACAAAACCCGAGGAGAACGGTGCCAACAGTCTCACTAAATTCCGAGTAGACGGTGAATTATATATGATAAAAGGCATGACAGCTCAAGAAGCTGCAGAGGCTGCAGCAAGAGCAGTTGCAGAGGCAGAATTTGCTATCACAGAGGCTGAACAAGCAGCAAAAGAGGCAGAAAGAGCAGAAGCAGAAGCTGAAGCTGCTCAGATATTTGCAAAGGCAGCCATGAAAGCTTTGAAGTTCAGGATCCGTAATCATCCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.01

Weight (kDa)

9.87

Isoelectric Point (pI)

32.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	8.2e-09	Myb-like DNA-binding domain
Linker_histone	PF00538	124 - 182	2e-09	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	572
Acc36I	ACCTGC	1 cut(s)	572
AccB1I	GGYRCC	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	687
AccII	CGCG	1 cut(s)	420
AciI	CCGC	2 cut(s)	420, 579
AclWI	GGATC	3 cut(s)	340, 874, 887
AcsI	RAATTY	3 cut(s)	460, 677, 767
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	4 cut(s)	88, 235, 501, 554
AfiI	CCNNNNNNNGG	1 cut(s)	408
AflII	CTTAAG	4 cut(s)	62, 122, 146, 215
AgsI	TTSAA	3 cut(s)	192, 466, 871
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	9 cut(s)	44, 53, 179, 260, 722, 731, 827, 833, 866
AluI	AGCT	9 cut(s)	44, 53, 179, 260, 722, 731, 827, 833, 866
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	132, 674
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	3 cut(s)	340, 874, 887
AlwNI	CAGNNNCTG	3 cut(s)	740, 785, 827
Ama87I	CYCGRG	1 cut(s)	647
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	7 cut(s)	41, 731, 740, 743, 794, 833, 854
ApoI	RAATTY	3 cut(s)	460, 677, 767
AspLEI	GCGC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	2 cut(s)	327, 704
AvaI	CYCGRG	1 cut(s)	647
BaeGI	GKGCMC	1 cut(s)	10
BamHI	GGATCC	1 cut(s)	879
BanI	GGYRCC	1 cut(s)	659
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	7 cut(s)	53, 718, 727, 755, 806, 820, 866
BciT130I	CCWGG	1 cut(s)	231
BciVI	GTATCC	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	132, 674
BfmI	CTRYAG	2 cut(s)	732, 741
BfrI	CTTAAG	4 cut(s)	62, 122, 146, 215
BfuAI	ACCTGC	1 cut(s)	572
BfuI	GTATCC	1 cut(s)	94
BisI	GCNGC	7 cut(s)	42, 732, 741, 744, 795, 834, 855
BlsI	GCNGC	7 cut(s)	43, 733, 742, 745, 796, 835, 856
Bme1390I	CCNGG	2 cut(s)	231, 315
BmeT110I	CYCGRG	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	600, 661, 881
BmrFI	CCNGG	2 cut(s)	231, 315
BmrI	ACTGGG	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	2 cut(s)	427, 708
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	3 cut(s)	313, 648, 893
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	313, 648, 893
BseGI	GGATG	2 cut(s)	250, 889
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	2 cut(s)	96, 851
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	3 cut(s)	470, 591, 665
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	7 cut(s)	53, 718, 727, 755, 806, 820, 866
Bsh1236I	CGCG	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	659
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	29, 315
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmAI	GTCTC	2 cut(s)	132, 674
BsmFI	GGGAC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	142, 332, 359, 381, 879
BspACI	CCGC	2 cut(s)	420, 579
BspCNI	CTCAG	2 cut(s)	97, 850
BspFNI	CGCG	1 cut(s)	420
BspLI	GGNNCC	3 cut(s)	600, 661, 881
BspMAI	CTGCAG	2 cut(s)	736, 745
BspMI	ACCTGC	1 cut(s)	572
BspPI	GGATC	3 cut(s)	340, 874, 887
BspT107I	GGYRCC	1 cut(s)	659
BspTI	CTTAAG	4 cut(s)	62, 122, 146, 215
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	313, 648, 893
BssMI	GATC	5 cut(s)	142, 332, 359, 381, 879
BssT1I	CCWWGG	1 cut(s)	893
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	3 cut(s)	659, 668, 692
BstAFI	CTTAAG	4 cut(s)	62, 122, 146, 215
BstAPI	GCANNNNNTGC	2 cut(s)	740, 770
BstDEI	CTNAG	3 cut(s)	105, 354, 837
BstF5I	GGATG	2 cut(s)	250, 889
BstFNI	CGCG	1 cut(s)	420
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	5 cut(s)	145, 335, 362, 384, 882
BstMAI	GTCTC	2 cut(s)	132, 674
BstMBI	GATC	5 cut(s)	142, 332, 359, 381, 879
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	229, 313
BstSFI	CTRYAG	2 cut(s)	732, 741
BstSLI	GKGCMC	1 cut(s)	10
BstUI	CGCG	1 cut(s)	420
BstV1I	GCAGC	7 cut(s)	53, 718, 727, 755, 806, 820, 866
BstX2I	RGATCY	1 cut(s)	879
BstYI	RGATCY	1 cut(s)	879
BsuI	GTATCC	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	250, 889
BveI	ACCTGC	1 cut(s)	572
CaiI	CAGNNNCTG	3 cut(s)	740, 785, 827
CfoI	GCGC	1 cut(s)	214
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	4 cut(s)	87, 234, 500, 553
CviAII	CATG	4 cut(s)	68, 491, 715, 859
CviQI	GTAC	4 cut(s)	87, 234, 500, 553
DdeI	CTNAG	3 cut(s)	105, 354, 837
DpnI	GATC	5 cut(s)	144, 334, 361, 383, 881
DpnII	GATC	5 cut(s)	142, 332, 359, 381, 879
Eco130I	CCWWGG	1 cut(s)	893
Eco57I	CTGAAG	1 cut(s)	849
Eco88I	CYCGRG	1 cut(s)	647
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	893
ErhI	CCWWGG	1 cut(s)	893
FaeI	CATG	4 cut(s)	71, 494, 718, 862
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 371, 403
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	4 cut(s)	67, 490, 714, 858
FauI	CCCGC	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	687
Fnu4HI	GCNGC	7 cut(s)	42, 732, 741, 744, 795, 834, 855
FokI	GGATG	2 cut(s)	257, 876
Fsp4HI	GCNGC	7 cut(s)	42, 732, 741, 744, 795, 834, 855
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	7 cut(s)	42, 732, 741, 744, 795, 834, 855
GsuI	CTGGAG	1 cut(s)	75
HapII	CCGG	2 cut(s)	29, 315
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	4 cut(s)	71, 494, 718, 862
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	223, 469
HpaII	CCGG	2 cut(s)	29, 315
HphI	GGTGA	2 cut(s)	327, 704
Hpy166II	GTNNAC	3 cut(s)	8, 24, 688
Hpy188I	TCNGA	4 cut(s)	100, 427, 683, 840
Hpy188III	TCNNGA	4 cut(s)	466, 614, 725, 877
Hpy8I	GTNNAC	3 cut(s)	8, 24, 688
HpyAV	CCTTC	3 cut(s)	193, 589, 611
HpyCH4III	ACNGT	3 cut(s)	659, 668, 692
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	7 cut(s)	8, 299, 587, 734, 743, 758, 848
HpyF3I	CTNAG	3 cut(s)	105, 354, 837
HpySE526I	ACGT	1 cut(s)	295
Hsp92II	CATG	4 cut(s)	71, 494, 718, 862
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	5 cut(s)	142, 332, 359, 381, 879
LmnI	GCTCC	1 cut(s)	604
Lsp1109I	GCAGC	7 cut(s)	53, 718, 727, 755, 806, 820, 866
MabI	ACCWGGT	1 cut(s)	229
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	5 cut(s)	144, 334, 361, 383, 881
MboI	GATC	5 cut(s)	142, 332, 359, 381, 879
MboII	GAAGA	4 cut(s)	44, 47, 208, 555
MflI	RGATCY	1 cut(s)	879
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	7 cut(s)	363, 396, 460, 568, 677, 695, 767
MlyI	GAGTC	2 cut(s)	217, 463
MseI	TTAA	8 cut(s)	48, 63, 116, 123, 147, 216, 506, 537
MspCI	CTTAAG	4 cut(s)	62, 122, 146, 215
MspI	CCGG	2 cut(s)	29, 315
MspR9I	CCNGG	2 cut(s)	231, 315
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	420
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	5 cut(s)	142, 332, 359, 381, 879
NlaIII	CATG	4 cut(s)	71, 494, 718, 862
NlaIV	GGNNCC	3 cut(s)	600, 661, 881
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	572
PkrI	GCNGC	7 cut(s)	43, 733, 742, 745, 796, 835, 856
PleI	GAGTC	2 cut(s)	217, 463
PpsI	GAGTC	2 cut(s)	217, 463
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	600, 661, 881
PstI	CTGCAG	2 cut(s)	736, 745
PstNI	CAGNNNCTG	3 cut(s)	740, 785, 827
PsuI	RGATCY	1 cut(s)	879
RsaI	GTAC	4 cut(s)	88, 235, 501, 554
RsaNI	GTAC	4 cut(s)	87, 234, 500, 553
SaqAI	TTAA	8 cut(s)	48, 63, 116, 123, 147, 216, 506, 537
SatI	GCNGC	7 cut(s)	42, 732, 741, 744, 795, 834, 855
Sau3AI	GATC	5 cut(s)	142, 332, 359, 381, 879
SchI	GAGTC	2 cut(s)	217, 463
ScrFI	CCNGG	2 cut(s)	231, 315
SduI	GDGCHC	1 cut(s)	10
SexAI	ACCWGGT	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	732, 741
SmlI	CTYRAG	6 cut(s)	62, 122, 146, 215, 406, 723
SmoI	CTYRAG	6 cut(s)	62, 122, 146, 215, 406, 723
Sse9I	AATT	7 cut(s)	363, 396, 460, 568, 677, 695, 767
SsiI	CCGC	2 cut(s)	420, 579
StyD4I	CCNGG	2 cut(s)	229, 313
StyI	CCWWGG	1 cut(s)	893
TaaI	ACNGT	3 cut(s)	659, 668, 692
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	1 cut(s)	521
TasI	AATT	7 cut(s)	363, 396, 460, 568, 677, 695, 767
TatI	WGTACW	1 cut(s)	552
Tru1I	TTAA	8 cut(s)	48, 63, 116, 123, 147, 216, 506, 537
Tru9I	TTAA	8 cut(s)	48, 63, 116, 123, 147, 216, 506, 537
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	7 cut(s)	41, 731, 740, 743, 794, 833, 854
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	306, 497, 875
TspGWI	ACGGA	1 cut(s)	872
Vha464I	CTTAAG	4 cut(s)	62, 122, 146, 215
VneI	GTGCAC	1 cut(s)	6
XapI	RAATTY	3 cut(s)	460, 677, 767
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.