Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Forward (+)

22585430 .. 22590285

Gene Structure 4856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G219800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGGTGCTCCTAAGCAGAAGTGGACTGCAGAAGAAGAAGCAGCCCTTAAAGCTGGAGTACTTAAACACGGGGCAGGCAAATGGCGCACAATACTCACAGATCCAGAGTTCAATTCTATCTTGCATCTGCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATAAACGTGACCGCAATATGGGGGTCTAGACAGAAGGCTAAGCTTGCACTTAAAAGGAACCTACCAAATCCCAAACATGATAATAACCCTTTGGCCGTGAGCACTGTGATTCAAAGTCATGAAGAAATTGTTGATGCTAAGCCTCTTGCCATTTCTGGTGGAAAATTGCAGACTACTGAATCAAAACAACCAATTGCCAGGTTGGATCACCTTATATTAGAGGCTATTACAAATCTGAAGGAGCTAGGGGGTTCTGACAGAGCTGCCATTGCTATGTACATAGAGGAGCAATATTGGGCGCCTCCAAACCTTAAAAAGCTACTCTCATCAAAATTAAAGCATATGGTCGCCAACGGAAAACTGATTAAGGTAAAGCATAGATACAGAATTGCACCAAGTTCAGCTTCTTCTGAAAAAAGAAGAAGCTCTTCAATGTTGCTCTTGGAGGGAAAGCAGAAGGATTCTTCAAGAGCGGATAAGAGCAATGTCAACATTCTTACTAAATCTCAAGTGGATGCAGATCTAAGCAAGATGAGAAGCATGACTGCACAAGAGGCTGCTGCTGCTGCTGCCCAGGCAGTTGCAGAAGCAGAAGCTGCCATTGCAGCAGCTGAAGAAGCAGCAAGGGAGGCAGAGGCGGCAGAAGCTGAAGCAGAAGCAGCACAAGTTTTTGCCAAAGCAGCAATGAAAGCATTGAAATGTAGAAGACTTGACCTTGACATGAAACTCGCACATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

302

Amino Acids

32.82

Weight (kDa)

9.61

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	638
AciI	CCGC	3 cut(s)	177, 638, 803
AclWI	GGATC	2 cut(s)	95, 378
AcoI	YGGCCR	1 cut(s)	258
AcuI	CTGAAG	3 cut(s)	422, 798, 834
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	60, 443
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	6 cut(s)	112, 135, 278, 597, 633, 862
AjnI	CCWGG	2 cut(s)	362, 738
AjuI	GAANNNNNNNTTGG	2 cut(s)	553, 585
Alw21I	GWGCWC	2 cut(s)	10, 269
AlwI	GGATC	2 cut(s)	95, 378
AlwNI	CAGNNNCTG	3 cut(s)	761, 776, 812
AoxI	GGCC	1 cut(s)	258
Asp700I	GAANNNNTTC	1 cut(s)	592
AspLEI	GCGC	2 cut(s)	87, 466
AsuHPI	GGTGA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	877
Bbv12I	GWGCWC	2 cut(s)	10, 269
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	364, 740
BfaI	CTAG	2 cut(s)	192, 410
BfmI	CTRYAG	1 cut(s)	27
BfoI	RGCGCY	1 cut(s)	467
BglII	AGATCT	1 cut(s)	685
BlpI	GCTNAGC	2 cut(s)	204, 303
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	364, 740
BmiI	GGNNCC	2 cut(s)	224, 465
BmrFI	CCNGG	2 cut(s)	364, 740
BmsI	GCATC	3 cut(s)	133, 289, 670
BpiI	GAAGAC	1 cut(s)	877
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	2 cut(s)	204, 303
BpuEI	CTTGAG	2 cut(s)	131, 657
BsaBI	GATNNNNATC	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	1 cut(s)	738
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse3DI	GCAATG	4 cut(s)	432, 655, 765, 855
Bse8I	GATNNNNATC	1 cut(s)	684
BseBI	CCWGG	2 cut(s)	364, 740
BseDI	CCNNGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	685
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	4 cut(s)	432, 655, 765, 855
BseRI	GAGGAG	1 cut(s)	464
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	2 cut(s)	10, 269
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	10, 269
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	4 cut(s)	100, 142, 370, 685
Bsp1720I	GCTNAGC	2 cut(s)	204, 303
BspACI	CCGC	3 cut(s)	177, 638, 803
BspANI	GGCC	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	224, 465
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	95, 378
BspQI	GCTCTTC	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	463
BsrBI	CCGCTC	1 cut(s)	638
BsrDI	GCAATG	4 cut(s)	432, 655, 765, 855
BsrGI	TGTACA	1 cut(s)	441
BssECI	CCNNGG	1 cut(s)	738
BssMI	GATC	4 cut(s)	100, 142, 370, 685
BssNI	GRCGYC	1 cut(s)	464
Bst2UI	CCWGG	2 cut(s)	364, 740
Bst4CI	ACNGT	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	598
BstACI	GRCGYC	1 cut(s)	464
BstAPI	GCANNNNNTGC	1 cut(s)	761
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	76, 210
BstDEI	CTNAG	4 cut(s)	12, 204, 303, 689
BstF5I	GGATG	1 cut(s)	685
BstH2I	RGCGCY	1 cut(s)	467
BstHHI	GCGC	2 cut(s)	87, 466
BstKTI	GATC	4 cut(s)	103, 145, 373, 688
BstMBI	GATC	4 cut(s)	100, 142, 370, 685
BstNI	CCWGG	2 cut(s)	364, 740
BstSCI	CCNGG	2 cut(s)	362, 738
BstSFI	CTRYAG	1 cut(s)	27
BstV2I	GAAGAC	1 cut(s)	877
BstX2I	RGATCY	2 cut(s)	100, 685
BstYI	RGATCY	2 cut(s)	100, 685
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	685
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	76, 210
CaiI	CAGNNNCTG	3 cut(s)	761, 776, 812
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	2 cut(s)	87, 466
Csp6I	GTAC	2 cut(s)	59, 442
CviAII	CATG	5 cut(s)	242, 284, 706, 886, 899
CviQI	GTAC	2 cut(s)	59, 442
DdeI	CTNAG	4 cut(s)	12, 204, 303, 689
DinI	GGCGCC	1 cut(s)	465
DpnI	GATC	4 cut(s)	102, 144, 372, 687
DpnII	GATC	4 cut(s)	100, 142, 370, 685
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco57I	CTGAAG	3 cut(s)	422, 798, 834
EcoRII	CCWGG	2 cut(s)	362, 738
EgeI	GGCGCC	1 cut(s)	465
EheI	GGCGCC	1 cut(s)	465
FaeI	CATG	5 cut(s)	245, 287, 709, 889, 902
FalI	AAGNNNNNCTT	6 cut(s)	30, 62, 553, 585, 577, 609
FatI	CATG	5 cut(s)	241, 283, 705, 885, 898
FauNDI	CATATG	1 cut(s)	507
FokI	GGATG	1 cut(s)	692
FspBI	CTAG	2 cut(s)	192, 410
GlaI	GCGC	2 cut(s)	86, 465
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	467
HaeIII	GGCC	1 cut(s)	260
HhaI	GCGC	2 cut(s)	87, 466
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	5 cut(s)	245, 287, 709, 889, 902
Hin6I	GCGC	2 cut(s)	85, 464
HinP1I	GCGC	2 cut(s)	85, 464
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	274, 344, 626
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	24, 655
Hpy188I	TCNGA	3 cut(s)	402, 421, 577
Hpy188III	TCNNGA	4 cut(s)	104, 192, 284, 633
Hpy8I	GTNNAC	2 cut(s)	24, 655
HpyAV	CCTTC	3 cut(s)	193, 397, 616
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	9 cut(s)	29, 124, 212, 334, 557, 683, 713, 749, 770
HpyF3I	CTNAG	4 cut(s)	12, 204, 303, 689
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	5 cut(s)	245, 287, 709, 889, 902
HspAI	GCGC	2 cut(s)	85, 464
KasI	GGCGCC	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	100, 142, 370, 685
LguI	GCTCTTC	1 cut(s)	598
LmnI	GCTCC	3 cut(s)	13, 406, 451
LpnPI	CCDG	8 cut(s)	39, 60, 117, 306, 349, 376, 725, 752
LweI	GCATC	3 cut(s)	133, 289, 670
MaeI	CTAG	2 cut(s)	192, 410
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	4 cut(s)	102, 144, 372, 687
MbiI	CCGCTC	1 cut(s)	638
MboI	GATC	4 cut(s)	100, 142, 370, 685
MboII	GAAGA	9 cut(s)	44, 47, 299, 564, 585, 597, 621, 791, 882
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	2 cut(s)	100, 685
MhlI	GDGCHC	2 cut(s)	10, 269
MluCI	AATT	6 cut(s)	112, 291, 329, 357, 497, 552
Mly113I	GGCGCC	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	8 cut(s)	318, 379, 442, 477, 604, 712, 787, 793
MroXI	GAANNNNTTC	1 cut(s)	592
MseI	TTAA	6 cut(s)	48, 63, 216, 477, 500, 531
MslI	CAYNNNNRTG	2 cut(s)	437, 862
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	2 cut(s)	364, 740
MunI	CAATTG	1 cut(s)	357
MvaI	CCWGG	2 cut(s)	364, 740
NarI	GGCGCC	1 cut(s)	464
NdeI	CATATG	1 cut(s)	507
NdeII	GATC	4 cut(s)	100, 142, 370, 685
NlaIII	CATG	5 cut(s)	245, 287, 709, 889, 902
NlaIV	GGNNCC	2 cut(s)	224, 465
NmuCI	GTSAC	1 cut(s)	172
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	3 cut(s)	274, 344, 626
PluTI	GGCGCC	1 cut(s)	467
Psp6I	CCWGG	2 cut(s)	362, 738
PspGI	CCWGG	2 cut(s)	362, 738
PspN4I	GGNNCC	2 cut(s)	224, 465
PstI	CTGCAG	1 cut(s)	31
PstNI	CAGNNNCTG	3 cut(s)	761, 776, 812
PsuI	RGATCY	2 cut(s)	100, 685
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	60, 443
RsaNI	GTAC	2 cut(s)	59, 442
RseI	CAYNNNNRTG	2 cut(s)	437, 862
SapI	GCTCTTC	1 cut(s)	598
SaqAI	TTAA	6 cut(s)	48, 63, 216, 477, 500, 531
Sau3AI	GATC	4 cut(s)	100, 142, 370, 685
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	364, 740
SduI	GDGCHC	2 cut(s)	10, 269
SfaNI	GCATC	3 cut(s)	133, 289, 670
SfcI	CTRYAG	1 cut(s)	27
SfoI	GGCGCC	1 cut(s)	465
SmiMI	CAYNNNNRTG	2 cut(s)	437, 862
SmlI	CTYRAG	2 cut(s)	146, 672
SmoI	CTYRAG	2 cut(s)	146, 672
Sse9I	AATT	6 cut(s)	112, 291, 329, 357, 497, 552
SsiI	CCGC	3 cut(s)	177, 638, 803
SspDI	GGCGCC	1 cut(s)	463
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	2 cut(s)	192, 410
StyD4I	CCNGG	2 cut(s)	362, 738
TaaI	ACNGT	1 cut(s)	271
TaiI	ACGT	1 cut(s)	174
TasI	AATT	6 cut(s)	112, 291, 329, 357, 497, 552
TatI	WGTACW	2 cut(s)	58, 441
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	3 cut(s)	274, 344, 626
Tru1I	TTAA	6 cut(s)	48, 63, 216, 477, 500, 531
Tru9I	TTAA	6 cut(s)	48, 63, 216, 477, 500, 531
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	300, 866, 902
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	1 cut(s)	274
XbaI	TCTAGA	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	2 cut(s)	192, 410
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.