Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487831.1

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2331

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487831.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggatagtagctctgcttgttgcaccccacttcagagttccatccttaggcagaaggctaagcttgcactcaaaaggaccactccaaccgctaaaaatgacaatagccctttggcagtgacaactgcagttcaaagtaatgaagaaactgctgatgctaagcctcttgccagctcgggtggaaaagtgcagactactgagtcaaagccaccaattgcgaggttggatcatctcatatttgaggctattactaatttgaaggagccaaggggctctgacagaaacacaatcactacgtacatagaggatcaatattgggcaccatcaaaccttagcaagctgctgtccacaaagttaaagcacatgacagccaatggaaaactagttaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

130

Amino Acids

14.1

Weight (kDa)

9.48

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	199
AccB1I	GGYRCC	1 cut(s)	319
AciI	CCGC	1 cut(s)	90
AclWI	GGATC	2 cut(s)	234, 315
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	2 cut(s)	134, 259
AhlI	ACTAGT	1 cut(s)	382
AluBI	AGCT	4 cut(s)	12, 64, 174, 340
AluI	AGCT	4 cut(s)	12, 64, 174, 340
AlwI	GGATC	2 cut(s)	234, 315
Ama87I	CYCGRG	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	78
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	327
BccI	CCATC	2 cut(s)	50, 331
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	1 cut(s)	126
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	2 cut(s)	60, 159
BlsI	GCNGC	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	78
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	264, 321
BmsI	GCATC	1 cut(s)	145
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	2 cut(s)	60, 159
BsaAI	YACGTR	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse21I	CCTNAGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	189
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	327
BsgI	GTGCAG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	175
BslI	CCNNNNNNNGG	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	275, 322
Bsp143I	GATC	2 cut(s)	226, 307
Bsp1720I	GCTNAGC	2 cut(s)	60, 159
BspACI	CCGC	1 cut(s)	90
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	264, 321
BspMAI	CTGCAG	1 cut(s)	130
BspPI	GGATC	2 cut(s)	234, 315
BspT107I	GGYRCC	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	2 cut(s)	226, 307
BssT1I	CCWWGG	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	297
BstC8I	GCNNGC	3 cut(s)	66, 172, 338
BstDEI	CTNAG	5 cut(s)	47, 60, 159, 198, 332
BstF5I	GGATG	1 cut(s)	42
BstKTI	GATC	2 cut(s)	229, 310
BstMBI	GATC	2 cut(s)	226, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	126
BstSLI	GKGCMC	1 cut(s)	322
BstSNI	TACGTA	1 cut(s)	297
BstV1I	GCAGC	1 cut(s)	327
Bsu36I	CCTNAGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	3 cut(s)	66, 172, 338
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	1 cut(s)	364
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	5 cut(s)	47, 60, 159, 198, 332
DpnI	GATC	2 cut(s)	228, 309
DpnII	GATC	2 cut(s)	226, 307
DrdI	GACNNNNNNGTC	1 cut(s)	199
DseDI	GACNNNNNNGTC	1 cut(s)	199
Eco105I	TACGTA	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	17
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	266
EcoT38I	GRGCYC	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	1 cut(s)	367
FaiI	YATR	3 cut(s)	236, 302, 365
FatI	CATG	1 cut(s)	363
Fnu4HI	GCNGC	1 cut(s)	341
FokI	GGATG	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	383
GluI	GCNGC	1 cut(s)	341
Hin1II	CATG	1 cut(s)	367
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	36, 277
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	49, 253
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	24, 68, 128, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	5 cut(s)	47, 60, 159, 198, 332
HpySE526I	ACGT	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	226, 307
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	1 cut(s)	184
Lsp1109I	GCAGC	1 cut(s)	327
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	383
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	228, 309
MboI	GATC	2 cut(s)	226, 307
MboII	GAAGA	1 cut(s)	155
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	275, 322
MluCI	AATT	2 cut(s)	213, 253
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	110, 204
MnlI	CCTC	4 cut(s)	174, 213, 235, 298
MseI	TTAA	2 cut(s)	356, 387
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	2 cut(s)	226, 307
NlaIII	CATG	1 cut(s)	367
NlaIV	GGNNCC	2 cut(s)	264, 321
NmuCI	GTSAC	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	342
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	264, 321
PspPI	GGNCC	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	130
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	2 cut(s)	356, 387
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	226, 307
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	209
SduI	GDGCHC	2 cut(s)	275, 322
SetI	ASST	7 cut(s)	14, 66, 176, 224, 299, 333, 342
SfaNI	GCATC	1 cut(s)	145
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	78
SnaBI	TACGTA	1 cut(s)	297
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	2 cut(s)	213, 253
SsiI	CCGC	1 cut(s)	90
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	1 cut(s)	383
StyI	CCWWGG	1 cut(s)	266
TaiI	ACGT	1 cut(s)	299
TasI	AATT	2 cut(s)	213, 253
Tru1I	TTAA	2 cut(s)	356, 387
Tru9I	TTAA	2 cut(s)	356, 387
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	156
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.