Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

28090586 .. 28095296

Gene Structure 4711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1298000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGTGCTCCTAAGCAGAAGTGGACCGCCGAAGAAGAAGCAGCCCTTAAAGCTGGAGTACTTAAACACGGGGCAGGAAAATGGCGCACAATACTGACAGATCCAGAATTCAATACTATCTTACATCTGCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAATATAAATGTGACCGCAATATGGGGTTCTAGACAGAAGGCTAAGCTTGCACTTAAAAGGAACTTACCAACTCCTAAACACGAGAACAACCCTTTGGCCGTGAGCACTGTAATCCAAAGTCATGAAGAAGTTGTTGACGCTAAGCCTCTTGCCATTTCTGGTGGAAAGTCGCAGACTATTGAATCAAAAGATTCAAAACAACCAATTGCCAGGTTGGATCACCTTATATTAGAGGCTATTACAAATTTGAAGGAGCCAGGGGGATCTGACAGAGCTGCAATTGCTATGCACATAGAGGAGCAATATTGGGCACCACCAAAACTTAAAAAGTTACTGTCATCAAAATTAAAGAATATGACAGCCACTGGAAAGCTGATTAAGGTCAAGCATAGATACAGAATTCCATTAAGTTCAGCTACTTCTGAAAAAAGAAGAAGCTCTTCAGCGTTGCTCTTGGAAGGAAAGCAGAAGGATTCATTGAGAAAAGATAAGAGTGACGTCAACATCCTTACTAAATCCCAAGTAGATGCAGATTTAACCAAGATGAGAAGCATGACTGCACAAGAGGCTGCTGCTGCTGCTGCACAGGCGGTAGCAGAAGCAGAGGCTGCCATTGCAGCAGCTGAGGAAGCAGCAAGGGAGGCGGAGGCTGCAGAAGCTGAAGCAGAAGCAGCACAAGTTTTTGCCAAAGCAGCAATGAAAGCATTGAAATGTAGAAAACTTGACCTTGACATGAAACTCACACATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

305

Amino Acids

33.17

Weight (kDa)

9.62

Isoelectric Point (pI)

41.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	1.3e-07	Myb-like DNA-binding domain
Linker_histone	PF00538	127 - 183	1.1e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	472
AciI	CCGC	4 cut(s)	27, 177, 752, 806
AclWI	GGATC	3 cut(s)	95, 387, 433
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	3 cut(s)	107, 406, 561
AcuI	CTGAAG	2 cut(s)	588, 843
AcyI	GRCGYC	1 cut(s)	660
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	6 cut(s)	112, 135, 344, 357, 412, 871
AjnI	CCWGG	2 cut(s)	371, 418
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	8 cut(s)	53, 208, 437, 535, 578, 600, 785, 821
AluI	AGCT	8 cut(s)	53, 208, 437, 535, 578, 600, 785, 821
Alw21I	GWGCWC	2 cut(s)	10, 269
AlwI	GGATC	3 cut(s)	95, 387, 433
AlwNI	CAGNNNCTG	4 cut(s)	527, 770, 785, 821
AoxI	GGCC	1 cut(s)	258
ApoI	RAATTY	3 cut(s)	107, 406, 561
Asp700I	GAANNNNTTC	1 cut(s)	601
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	374
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	472
BauI	CACGAG	1 cut(s)	242
Bbv12I	GWGCWC	2 cut(s)	10, 269
BbvCI	CCTCAGC	1 cut(s)	786
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	373, 420
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	813
BlpI	GCTNAGC	2 cut(s)	204, 303
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	373, 420
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	417, 474
BmrFI	CCNGG	2 cut(s)	373, 420
BmsI	GCATC	1 cut(s)	679
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	2 cut(s)	12, 786
Bpu1102I	GCTNAGC	2 cut(s)	204, 303
BpuEI	CTTGAG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	660
BsaJI	CCNNGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
Bse1I	ACTGG	1 cut(s)	532
Bse3DI	GCAATG	2 cut(s)	774, 864
BseBI	CCWGG	2 cut(s)	373, 420
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	666
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMI	GCAATG	2 cut(s)	774, 864
BseMII	CTCAG	1 cut(s)	777
BseNI	ACTGG	1 cut(s)	532
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	475
BsgI	GTGCAG	2 cut(s)	705, 729
BshFI	GGCC	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	472
BsiHKAI	GWGCWC	2 cut(s)	10, 269
BslI	CCNNNNNNNGG	1 cut(s)	183
BsnI	GGCC	1 cut(s)	260
Bsp1286I	GDGCHC	3 cut(s)	10, 269, 475
Bsp143I	GATC	4 cut(s)	100, 142, 379, 425
Bsp1720I	GCTNAGC	2 cut(s)	204, 303
BspACI	CCGC	4 cut(s)	27, 177, 752, 806
BspANI	GGCC	1 cut(s)	260
BspCNI	CTCAG	1 cut(s)	778
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	417, 474
BspMAI	CTGCAG	1 cut(s)	817
BspPI	GGATC	3 cut(s)	95, 387, 433
BspQI	GCTCTTC	1 cut(s)	607
BspT107I	GGYRCC	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	774, 864
BsrI	ACTGG	1 cut(s)	532
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	4 cut(s)	100, 142, 379, 425
BssNI	GRCGYC	1 cut(s)	660
BssSI	CACGAG	1 cut(s)	242
Bst2BI	CACGAG	1 cut(s)	242
Bst2UI	CCWGG	2 cut(s)	373, 420
Bst4CI	ACNGT	2 cut(s)	271, 498
Bst6I	CTCTTC	1 cut(s)	607
BstACI	GRCGYC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	4 cut(s)	12, 204, 303, 786
BstF5I	GGATG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	4 cut(s)	103, 145, 382, 428
BstMBI	GATC	4 cut(s)	100, 142, 379, 425
BstNI	CCWGG	2 cut(s)	373, 420
BstSCI	CCNGG	2 cut(s)	371, 418
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	475
BstX2I	RGATCY	2 cut(s)	100, 425
BstYI	RGATCY	2 cut(s)	100, 425
BsuRI	GGCC	1 cut(s)	260
BtsCI	GGATG	1 cut(s)	666
BtsIMutI	CAGTG	2 cut(s)	267, 525
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	4 cut(s)	527, 770, 785, 821
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	59
CviAII	CATG	4 cut(s)	284, 715, 895, 908
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	4 cut(s)	12, 204, 303, 786
DpnI	GATC	4 cut(s)	102, 144, 381, 427
DpnII	GATC	4 cut(s)	100, 142, 379, 425
EaeI	YGGCCR	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	607
EarI	CTCTTC	1 cut(s)	607
EciI	GGCGGA	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	2 cut(s)	588, 843
EcoRI	GAATTC	2 cut(s)	107, 561
EcoRII	CCWGG	2 cut(s)	371, 418
FaeI	CATG	4 cut(s)	287, 718, 898, 911
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 586, 618
FatI	CATG	4 cut(s)	283, 714, 894, 907
FokI	GGATG	1 cut(s)	653
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	260
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	660
Hin1II	CATG	4 cut(s)	287, 718, 898, 911
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	2 cut(s)	298, 664
HindII	GTYRAC	2 cut(s)	298, 664
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	344, 353, 635
HphI	GGTGA	1 cut(s)	374
Hpy166II	GTNNAC	3 cut(s)	24, 298, 664
Hpy188I	TCNGA	2 cut(s)	430, 586
Hpy188III	TCNNGA	3 cut(s)	104, 192, 284
Hpy8I	GTNNAC	3 cut(s)	24, 298, 664
HpyAV	CCTTC	4 cut(s)	193, 406, 614, 625
HpyCH4III	ACNGT	2 cut(s)	271, 498
HpyCH4IV	ACGT	1 cut(s)	660
HpyCH4V	TGCA	8 cut(s)	212, 440, 451, 692, 722, 746, 779, 815
HpyF3I	CTNAG	4 cut(s)	12, 204, 303, 786
HpySE526I	ACGT	1 cut(s)	660
Hsp92I	GRCGYC	1 cut(s)	660
Hsp92II	CATG	4 cut(s)	287, 718, 898, 911
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	100, 142, 379, 425
LguI	GCTCTTC	1 cut(s)	607
LmnI	GCTCC	3 cut(s)	13, 415, 460
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	660
MaeIII	GTNAC	3 cut(s)	172, 492, 656
MalI	GATC	4 cut(s)	102, 144, 381, 427
MboI	GATC	4 cut(s)	100, 142, 379, 425
MboII	GAAGA	5 cut(s)	44, 47, 299, 594, 606
MfeI	CAATTG	2 cut(s)	366, 441
MflI	RGATCY	2 cut(s)	100, 425
MhlI	GDGCHC	3 cut(s)	10, 269, 475
MluCI	AATT	6 cut(s)	107, 366, 406, 441, 506, 561
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	318, 388, 451, 721, 760, 781, 796, 802
MroXI	GAANNNNTTC	1 cut(s)	601
MseI	TTAA	8 cut(s)	48, 63, 216, 486, 509, 540, 569, 698
MslI	CAYNNNNRTG	1 cut(s)	871
MspA1I	CMGCKG	1 cut(s)	785
MspR9I	CCNGG	2 cut(s)	373, 420
MunI	CAATTG	2 cut(s)	366, 441
MvaI	CCWGG	2 cut(s)	373, 420
NdeII	GATC	4 cut(s)	100, 142, 379, 425
NlaIII	CATG	4 cut(s)	287, 718, 898, 911
NlaIV	GGNNCC	2 cut(s)	417, 474
NmuCI	GTSAC	2 cut(s)	172, 656
PagI	TCATGA	1 cut(s)	283
PciSI	GCTCTTC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	601
PfeI	GAWTC	3 cut(s)	344, 353, 635
Psp6I	CCWGG	2 cut(s)	371, 418
PspGI	CCWGG	2 cut(s)	371, 418
PspN4I	GGNNCC	2 cut(s)	417, 474
PspPI	GGNCC	1 cut(s)	24
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	4 cut(s)	527, 770, 785, 821
PsuI	RGATCY	2 cut(s)	100, 425
PvuII	CAGCTG	1 cut(s)	785
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	871
SapI	GCTCTTC	1 cut(s)	607
SaqAI	TTAA	8 cut(s)	48, 63, 216, 486, 509, 540, 569, 698
Sau3AI	GATC	4 cut(s)	100, 142, 379, 425
Sau96I	GGNCC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	373, 420
SduI	GDGCHC	3 cut(s)	10, 269, 475
SfaNI	GCATC	1 cut(s)	679
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	871
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	107, 366, 406, 441, 506, 561
SsiI	CCGC	4 cut(s)	27, 177, 752, 806
SspI	AATATT	1 cut(s)	467
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	371, 418
TaaI	ACNGT	2 cut(s)	271, 498
TaiI	ACGT	1 cut(s)	663
TasI	AATT	6 cut(s)	107, 366, 406, 441, 506, 561
TatI	WGTACW	1 cut(s)	58
TfiI	GAWTC	3 cut(s)	344, 353, 635
Tru1I	TTAA	8 cut(s)	48, 63, 216, 486, 509, 540, 569, 698
Tru9I	TTAA	8 cut(s)	48, 63, 216, 486, 509, 540, 569, 698
TscAI	CASTG	2 cut(s)	274, 532
TseFI	GTSAC	2 cut(s)	172, 656
Tsp45I	GTSAC	2 cut(s)	172, 656
TspDTI	ATGAA	4 cut(s)	300, 627, 875, 911
TspRI	CASTG	2 cut(s)	274, 532
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	3 cut(s)	107, 406, 561
XbaI	TCTAGA	1 cut(s)	191
XmnI	GAANNNNTTC	1 cut(s)	601
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	661
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.