Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Forward (+)

73022847 .. 73027074

Gene Structure 4228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00135460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTGCTCCTAAGCAGAAGTGGACACCAGAAGAAGAAGCAGCCCTTAAAGCTGGAGTTCTTAAACATGGGGCAGGCAAATGGCGCACAATACTCTCAGACAAAGAGTTTGGTGCTATCTTGCATCTGCGTTCAAATGTTGATCTCAAGGACAAATGGAGAAATATAAATGTGACAGCAATATGGGGATCTAGGCAGAAAGCTAAGCTTGCACTCAAAAGGACCACTCCAACCGCTAAAAATGACAATAGCCCTTTGGCAGTGACAACTGCAGTTCAAAGTAATGAAGAAACTGCTGATGCAAAGCCTCTTGCCAGCTCGGGTGGAAAAGTGCAGACTACTGAGTCAAAGCCACCAATTGCGAGGTTGGATCATCTCATATTTGAGGCTATTACAAATTTGAAGGAGCCAAGGGGCTCTGACAGAAACACAATCACTACGTACATAGAGGATCAATATTGGGCACCATCAAACCTTAGTAAGCTACTGTCCACAAAGTTAAAGCACATGACAGCCAATGGAAAACTAGTTAAGGTAAAGCATAGATACAGAATTCCACCAAATTCAGCAACTTCTGAAAAAGAAGAAACTCTTCAACATTGCTCTCGGAGGGAAAGCAGAGGGATTCTACGAGAGCAGATAAAAGTGTGGTCAGCATTCTTACTAAATCACAAGTTGATGCAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

229

Amino Acids

25.7

Weight (kDa)

10.0

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	1.3e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	124 - 180	1.8e-11	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	463
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	3 cut(s)	196, 378, 459
AcsI	RAATTY	3 cut(s)	397, 552, 562
AfaI	GTAC	1 cut(s)	443
AgsI	TTSAA	4 cut(s)	135, 278, 403, 596
AhlI	ACTAGT	1 cut(s)	526
AluBI	AGCT	6 cut(s)	53, 203, 208, 318, 484, 687
AluI	AGCT	6 cut(s)	53, 203, 208, 318, 484, 687
Alw21I	GWGCWC	1 cut(s)	10
AlwI	GGATC	3 cut(s)	196, 378, 459
Ama87I	CYCGRG	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	3 cut(s)	397, 552, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	466
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	1 cut(s)	53
BccI	CCATC	1 cut(s)	475
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	2 cut(s)	192, 527
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	408, 465
BmsI	GCATC	3 cut(s)	133, 289, 669
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	131
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	410
Bse3DI	GCAATG	1 cut(s)	598
BseDI	CCNNGG	1 cut(s)	410
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	2 cut(s)	111, 333
BseSI	GKGCMC	1 cut(s)	466
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	353
BshNI	GGYRCC	1 cut(s)	463
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	656
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	10, 419, 466
Bsp143I	GATC	4 cut(s)	142, 188, 370, 451
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	110, 334
BspLI	GGNNCC	2 cut(s)	408, 465
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	3 cut(s)	196, 378, 459
BspT107I	GGYRCC	1 cut(s)	463
BsrDI	GCAATG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	410
BssMI	GATC	4 cut(s)	142, 188, 370, 451
BssT1I	CCWWGG	1 cut(s)	410
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	1 cut(s)	597
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	76, 210, 316
BstDEI	CTNAG	5 cut(s)	12, 97, 204, 342, 476
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	4 cut(s)	145, 191, 373, 454
BstMBI	GATC	4 cut(s)	142, 188, 370, 451
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 84, 209
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	466
BstSNI	TACGTA	1 cut(s)	441
BstV1I	GCAGC	1 cut(s)	53
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	76, 210, 316
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	68, 508
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	5 cut(s)	12, 97, 204, 342, 476
DpnI	GATC	4 cut(s)	144, 190, 372, 453
DpnII	GATC	4 cut(s)	142, 188, 370, 451
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Eco105I	TACGTA	1 cut(s)	441
Eco130I	CCWWGG	1 cut(s)	410
Eco24I	GRGCYC	1 cut(s)	419
Eco47I	GGWCC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	319
EcoRI	GAATTC	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	410
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	410
FaeI	CATG	2 cut(s)	71, 511
FaiI	YATR	7 cut(s)	69, 167, 184, 380, 446, 509, 543
FalI	AAGNNNNNCTT	6 cut(s)	30, 62, 192, 224, 576, 608
FatI	CATG	2 cut(s)	67, 507
Fnu4HI	GCNGC	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	192, 527
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	42
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	2 cut(s)	71, 511
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	344, 625
Hpy166II	GTNNAC	2 cut(s)	24, 492
Hpy188I	TCNGA	4 cut(s)	100, 421, 577, 609
Hpy8I	GTNNAC	2 cut(s)	24, 492
HpyAV	CCTTC	1 cut(s)	397
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	6 cut(s)	124, 212, 272, 302, 334, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 84, 209
HpyF3I	CTNAG	5 cut(s)	12, 97, 204, 342, 476
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	2 cut(s)	71, 511
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	4 cut(s)	142, 188, 370, 451
LmnI	GCTCC	2 cut(s)	13, 406
LpnPI	CCDG	4 cut(s)	39, 42, 60, 328
Lsp1109I	GCAGC	1 cut(s)	53
LweI	GCATC	3 cut(s)	133, 289, 669
MaeI	CTAG	2 cut(s)	192, 527
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	172, 262
MalI	GATC	4 cut(s)	144, 190, 372, 453
MboI	GATC	4 cut(s)	142, 188, 370, 451
MboII	GAAGA	5 cut(s)	44, 47, 299, 584, 596
MfeI	CAATTG	1 cut(s)	357
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	3 cut(s)	10, 419, 466
MluCI	AATT	4 cut(s)	357, 397, 552, 562
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	2 cut(s)	254, 348
MnlI	CCTC	6 cut(s)	318, 357, 379, 442, 603, 614
MroXI	GAANNNNTTC	1 cut(s)	591
MseI	TTAA	4 cut(s)	48, 63, 500, 531
MunI	CAATTG	1 cut(s)	357
Mva1269I	GAATGC	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	50, 84, 209
NdeII	GATC	4 cut(s)	142, 188, 370, 451
NlaIII	CATG	2 cut(s)	71, 511
NlaIV	GGNNCC	2 cut(s)	408, 465
NmuCI	GTSAC	2 cut(s)	172, 262
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	591
PfeI	GAWTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
Ppu21I	YACGTR	1 cut(s)	441
PspN4I	GGNNCC	2 cut(s)	408, 465
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	188
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
SaqAI	TTAA	4 cut(s)	48, 63, 500, 531
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	4 cut(s)	142, 188, 370, 451
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	3 cut(s)	10, 419, 466
SfaNI	GCATC	3 cut(s)	133, 289, 669
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
SnaBI	TACGTA	1 cut(s)	441
SpeI	ACTAGT	1 cut(s)	526
Sse9I	AATT	4 cut(s)	357, 397, 552, 562
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	458
SspMI	CTAG	2 cut(s)	192, 527
StyI	CCWWGG	1 cut(s)	410
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	443
TasI	AATT	4 cut(s)	357, 397, 552, 562
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	4 cut(s)	48, 63, 500, 531
Tru9I	TTAA	4 cut(s)	48, 63, 500, 531
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	172, 262
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	172, 262
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	3 cut(s)	397, 552, 562
XmnI	GAANNNNTTC	1 cut(s)	591
XspI	CTAG	2 cut(s)	192, 527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.