Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

19479553 .. 19483892

Gene Structure 4340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGACAAACACTGGATCTTGTTCGCTCCAACCCACATATGCGTGGCCGTATTGTGCTGCTGCTGATGTGAGTTTCAAAGATTTTGTGCGGAAGAGTTTTGGACTTCTGTTGATGGGTGCTCCTAAGCAGAAGTGGACGCCAGAAGAAGAAGCAGCCCTTAAAGCTGGAGTTCTTAAACATGGGGCAGGCAAATGGCGCACAATACTCTCGGACAAAGAGTTTGGTGCTATCTTGCATCTGCGTTCAAATGTTGATCTCAAGGACAAATGGAGAAATATAAATGTGACAGCAATATGGGGATCTAGGCAGAAGGCTAAGCTTGCACTCAAAAGGACCACTCCAACCACTAAAAATGACAGTAGCCCTTTGGCAGTGACAACTGCAGTTCAAAGTAATGAAGAAACTGCTGATGCTAAGCCTCTTGCCAGCTCGGGTGGAAAAGTGCAGACTTCTGAGTCAAAGCCACCAATTGCGAGGCTGGATCATCTCATATTTGAGGCGATTACAAATTTGAAGGAGCCAAGGGGTTCTGACAGAAACACAATCACTACGTACATAGAGGATCAATATTGGGCACCATCAAACCTTAGTAAGCTACTGTCCACAAAGTTAAAGCACATGACAGCCAATGGAAAACTAGTTAAGGTAAAGCATAGATACAGAATTCCACCAAATTCAGCAACTTCTGAAAAAAGAAGAAACTCTTCAACATTGCTCTCGGAGGGAAAGCAGAAGGATTCTACGAGAGCAGATAAAAGTGTGGTCAGCATTCTTACTAAATCACAAGTCGATGCAGAGCTAACCATGATCAGGAGCATGACTGCACAAGAGGCTGCTGCTGCTGCTGCACAAGCAGTTGCCGAGGCAGAAGCTGCCATTGCAGCTGCTGAAGAGGCAGCACGGGAGGCAGAGGCAGCAGAAGCTGAAGCAGAAGCAGCACAAGTTTTTGCAAAGGCAGCAGTGAAAGCATTGAAATGTAGAAGACTCGATCTTGATATGAAACTCGCACACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

339

Amino Acids

36.69

Weight (kDa)

9.53

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	42 - 92	2.4e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	161 - 217	3.5e-11	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	574
AciI	CCGC	1 cut(s)	88
AclWI	GGATC	4 cut(s)	22, 307, 489, 570
AcoI	YGGCCR	1 cut(s)	44
AcsI	RAATTY	3 cut(s)	508, 663, 673
AcuI	CTGAAG	2 cut(s)	909, 945
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	810
AgsI	TTSAA	6 cut(s)	76, 246, 389, 514, 708, 973
AhlI	ACTAGT	1 cut(s)	637
AluBI	AGCT	8 cut(s)	164, 319, 429, 595, 799, 872, 884, 923
AluI	AGCT	8 cut(s)	164, 319, 429, 595, 799, 872, 884, 923
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	4 cut(s)	22, 307, 489, 570
AlwNI	CAGNNNCTG	3 cut(s)	872, 887, 923
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	1 cut(s)	44
ApoI	RAATTY	3 cut(s)	508, 663, 673
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	333
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	574
BbsI	GAAGAC	1 cut(s)	988
Bbv12I	GWGCWC	1 cut(s)	121
BccI	CCATC	2 cut(s)	106, 586
BceAI	ACGGC	1 cut(s)	31
BclI	TGATCA	1 cut(s)	807
BcuI	ACTAGT	1 cut(s)	637
BfaI	CTAG	2 cut(s)	303, 638
BfmI	CTRYAG	1 cut(s)	381
BlpI	GCTNAGC	2 cut(s)	315, 414
Bme18I	GGWCC	1 cut(s)	333
BmeT110I	CYCGRG	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	333
BmiI	GGNNCC	2 cut(s)	519, 576
BmsI	GCATC	3 cut(s)	244, 400, 781
BpiI	GAAGAC	1 cut(s)	988
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	2 cut(s)	315, 414
BpuEI	CTTGAG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	521, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	810
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	2 cut(s)	710, 876
BseDI	CCNNGG	2 cut(s)	521, 861
BseLI	CCNNNNNNNGG	1 cut(s)	810
BseMI	GCAATG	2 cut(s)	710, 876
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	577
BsgI	GTGCAG	3 cut(s)	464, 807, 831
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	430
BslI	CCNNNNNNNGG	1 cut(s)	810
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	121, 577
Bsp143I	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
Bsp1720I	GCTNAGC	2 cut(s)	315, 414
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	1 cut(s)	445
BspLI	GGNNCC	2 cut(s)	519, 576
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	4 cut(s)	22, 307, 489, 570
BspT107I	GGYRCC	1 cut(s)	574
BsrDI	GCAATG	2 cut(s)	710, 876
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	2 cut(s)	521, 861
BssMI	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	359, 600
Bst6I	CTCTTC	3 cut(s)	86, 709, 885
BstACI	GRCGYC	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBAI	YACGTR	1 cut(s)	552
BstC8I	GCNNGC	3 cut(s)	187, 321, 427
BstDEI	CTNAG	5 cut(s)	123, 315, 414, 453, 587
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	7 cut(s)	17, 256, 302, 484, 565, 810, 991
BstMBI	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	577
BstSNI	TACGTA	1 cut(s)	552
BstV2I	GAAGAC	1 cut(s)	988
BstX2I	RGATCY	2 cut(s)	14, 299
BstYI	RGATCY	2 cut(s)	14, 299
BsuRI	GGCC	1 cut(s)	46
BtsI	GCAGTG	2 cut(s)	378, 966
BtsIMutI	CAGTG	3 cut(s)	9, 378, 966
Cac8I	GCNNGC	3 cut(s)	187, 321, 427
CaiI	CAGNNNCTG	3 cut(s)	872, 887, 923
CfoI	GCGC	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	333
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	4 cut(s)	179, 619, 805, 817
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	5 cut(s)	123, 315, 414, 453, 587
DpnI	GATC	7 cut(s)	16, 255, 301, 483, 564, 809, 990
DpnII	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
DrdI	GACNNNNNNGTC	1 cut(s)	454
DseDI	GACNNNNNNGTC	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	86, 709, 885
EarI	CTCTTC	3 cut(s)	86, 709, 885
Eco105I	TACGTA	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	333
Eco57I	CTGAAG	2 cut(s)	909, 945
Eco88I	CYCGRG	1 cut(s)	430
EcoRI	GAATTC	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	4 cut(s)	182, 622, 808, 820
FalI	AAGNNNNNCTT	4 cut(s)	141, 173, 688, 720
FatI	CATG	4 cut(s)	178, 618, 804, 816
FauNDI	CATATG	1 cut(s)	37
FbaI	TGATCA	1 cut(s)	807
FspBI	CTAG	2 cut(s)	303, 638
GlaI	GCGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	46
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	182, 622, 808, 820
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	3 cut(s)	455, 737, 984
Hpy166II	GTNNAC	2 cut(s)	135, 603
Hpy188I	TCNGA	5 cut(s)	211, 454, 532, 688, 721
Hpy188III	TCNNGA	2 cut(s)	811, 992
Hpy8I	GTNNAC	2 cut(s)	135, 603
HpyAV	CCTTC	3 cut(s)	304, 508, 727
HpyCH4III	ACNGT	2 cut(s)	359, 600
HpyCH4IV	ACGT	1 cut(s)	551
HpyCH4V	TGCA	9 cut(s)	235, 323, 383, 445, 794, 824, 848, 881, 950
HpyF3I	CTNAG	5 cut(s)	123, 315, 414, 453, 587
HpySE526I	ACGT	1 cut(s)	551
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	4 cut(s)	182, 622, 808, 820
HspAI	GCGC	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	807
Kzo9I	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
LmnI	GCTCC	4 cut(s)	30, 124, 517, 813
LpnPI	CCDG	6 cut(s)	150, 153, 171, 439, 464, 796
LweI	GCATC	3 cut(s)	244, 400, 781
MaeI	CTAG	2 cut(s)	303, 638
MaeII	ACGT	1 cut(s)	551
MaeIII	GTNAC	2 cut(s)	283, 373
MalI	GATC	7 cut(s)	16, 255, 301, 483, 564, 809, 990
MboI	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
MboII	GAAGA	8 cut(s)	103, 155, 158, 410, 696, 708, 902, 993
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	2 cut(s)	14, 299
MhlI	GDGCHC	2 cut(s)	121, 577
MluCI	AATT	4 cut(s)	468, 508, 663, 673
MlyI	GAGTC	2 cut(s)	464, 978
MmeI	TCCRAC	2 cut(s)	52, 365
MroXI	GAANNNNTTC	1 cut(s)	703
MseI	TTAA	4 cut(s)	159, 174, 611, 642
MslI	CAYNNNNRTG	2 cut(s)	40, 973
MspA1I	CMGCKG	1 cut(s)	884
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	768
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
NlaIII	CATG	4 cut(s)	182, 622, 808, 820
NlaIV	GGNNCC	2 cut(s)	519, 576
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	2 cut(s)	283, 373
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	737
PleI	GAGTC	2 cut(s)	463, 978
PpsI	GAGTC	2 cut(s)	463, 978
Ppu21I	YACGTR	1 cut(s)	552
PspN4I	GGNNCC	2 cut(s)	519, 576
PspPI	GGNCC	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	3 cut(s)	872, 887, 923
PsuI	RGATCY	2 cut(s)	14, 299
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	2 cut(s)	40, 973
SaqAI	TTAA	4 cut(s)	159, 174, 611, 642
Sau3AI	GATC	7 cut(s)	14, 253, 299, 481, 562, 807, 988
Sau96I	GGNCC	1 cut(s)	333
SchI	GAGTC	2 cut(s)	464, 978
SduI	GDGCHC	2 cut(s)	121, 577
SfaNI	GCATC	3 cut(s)	244, 400, 781
SfcI	CTRYAG	1 cut(s)	381
SinI	GGWCC	1 cut(s)	333
SmiMI	CAYNNNNRTG	2 cut(s)	40, 973
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
SnaBI	TACGTA	1 cut(s)	552
SpeI	ACTAGT	1 cut(s)	637
Sse9I	AATT	4 cut(s)	468, 508, 663, 673
SsiI	CCGC	1 cut(s)	88
SspI	AATATT	1 cut(s)	569
SspMI	CTAG	2 cut(s)	303, 638
StyI	CCWWGG	1 cut(s)	521
TaaI	ACNGT	2 cut(s)	359, 600
TaiI	ACGT	1 cut(s)	554
TaqI	TCGA	2 cut(s)	789, 987
TasI	AATT	4 cut(s)	468, 508, 663, 673
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	4 cut(s)	159, 174, 611, 642
Tru9I	TTAA	4 cut(s)	159, 174, 611, 642
TscAI	CASTG	3 cut(s)	16, 378, 966
TseFI	GTSAC	2 cut(s)	283, 373
Tsp45I	GTSAC	2 cut(s)	283, 373
TspDTI	ATGAA	2 cut(s)	411, 1013
TspRI	CASTG	3 cut(s)	16, 378, 966
VpaK11BI	GGWCC	1 cut(s)	333
XapI	RAATTY	3 cut(s)	508, 663, 673
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	2 cut(s)	303, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.