Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

10340688 .. 10345110

Gene Structure 4423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g17790.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGTGCTCCTAAGCAGAAGTGGACTCCAGAAGAAGAAGCGGCCCTTAAAGCTGGAGTACTTAAACATGGGGCAGGAAAATGGCGCACGATACTCTCGGACAAAGAGTTTGGTACTATCTTGCATCTGCGTTCCAATGTTGATCTCAAGGACAAATGGAGAAACATAAATGTGACTGCAATATGGGGATCTAGGCAGAAGGCTAAGCTTGCACTCAAAAGGACCACTCCAACTCCTAAACGTGACAATAGCCCAGTGGCAGTGACAACTGCAGTCAAAAGTAATGAAGAAACTGTTGACACGAAGCCAGATGCCAGTTCGGGTGGAAAGGTGCAGACAGAGTCAAAGCCGCCAATTGCAAGGTTGGATCATCTTATATATGAGGCTCTTACAAATTTGAAGGAGCCAAGGGGTTCTGACAAAAACACAATCACTAAGTACATAGAGGATCAGTATTGGGCACCATCAAACCTTAGTAAGCTACTGTCCACAAAGTTAAAGCACATGACAGCCAATGGAAAACTAGTTAAGGTAAAGCATAGATTCAGAATTCCACCAAGTTCAGCAACTTCAGAAAAAAGAAGAAGCTCTTCAACATTGCTCTCAGAAGGAAAGCAGAAGAATTCTACTAGAGGAGATAAAACTGTGCTCAGCATTCTTACTAAATCACAAGTTGATGCAGAGCTAACCATGATCAGGAGCATGACTGCTCAAGAGGCTGCTGCTGCTGCTGCGCAAGCAGTTGCCGAAGCAGAAGCTGCCATTGCAGCTGCTGAAGAGGCAGCACGGGAGGCAGAGGCAGCAGAAGCTGAAGCAGAAGCAGCACAAGTTTTTGCAAAGGCAGCAGTAAAAGCATTGAAATGTAGAAGACTTGATCTTGATATGAAACTCGCACACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

301

Amino Acids

32.63

Weight (kDa)

9.74

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	1.6e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	123 - 179	7.4e-11	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	460
AciI	CCGC	2 cut(s)	41, 350
AclWI	GGATC	3 cut(s)	196, 375, 456
AcsI	RAATTY	3 cut(s)	394, 549, 622
AcuI	CTGAAG	3 cut(s)	555, 795, 831
AfaI	GTAC	3 cut(s)	60, 115, 440
AfiI	CCNNNNNNNGG	1 cut(s)	696
AgsI	TTSAA	3 cut(s)	400, 594, 859
AhlI	ACTAGT	1 cut(s)	523
AluBI	AGCT	8 cut(s)	53, 208, 481, 588, 685, 758, 770, 809
AluI	AGCT	8 cut(s)	53, 208, 481, 588, 685, 758, 770, 809
Alw21I	GWGCWC	2 cut(s)	10, 651
AlwI	GGATC	3 cut(s)	196, 375, 456
AlwNI	CAGNNNCTG	3 cut(s)	758, 773, 809
AoxI	GGCC	1 cut(s)	42
ApoI	RAATTY	3 cut(s)	394, 549, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	92, 124
Asp700I	GAANNNNTTC	1 cut(s)	589
AspLEI	GCGC	2 cut(s)	87, 736
AspS9I	GGNCC	2 cut(s)	43, 222
AvaII	GGWCC	1 cut(s)	222
BaeGI	GKGCMC	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	874
Bbv12I	GWGCWC	2 cut(s)	10, 651
BccI	CCATC	1 cut(s)	472
BclI	TGATCA	1 cut(s)	693
BcuI	ACTAGT	1 cut(s)	523
BfaI	CTAG	3 cut(s)	192, 524, 630
BfmI	CTRYAG	1 cut(s)	270
BlpI	GCTNAGC	2 cut(s)	204, 650
BmcAI	AGTACT	1 cut(s)	60
Bme18I	GGWCC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	43, 222
BmiI	GGNNCC	2 cut(s)	405, 462
BmrI	ACTGGG	1 cut(s)	248
BmsI	GCATC	3 cut(s)	133, 301, 667
BmuI	ACTGGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	874
BpmI	CTGGAG	2 cut(s)	12, 75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	2 cut(s)	204, 650
BpuEI	CTTGAG	2 cut(s)	131, 696
BsaJI	CCNNGG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	217, 247
Bsc4I	CCNNNNNNNGG	1 cut(s)	696
Bse1I	ACTGG	2 cut(s)	254, 315
Bse3DI	GCAATG	2 cut(s)	596, 762
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	696
BseMI	GCAATG	2 cut(s)	596, 762
BseMII	CTCAG	2 cut(s)	618, 664
BseNI	ACTGG	2 cut(s)	254, 315
BseRI	GAGGAG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	463
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	460
BsiHKAI	GWGCWC	2 cut(s)	10, 651
BslI	CCNNNNNNNGG	1 cut(s)	696
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	44
Bsp1286I	GDGCHC	3 cut(s)	10, 463, 651
Bsp143I	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
Bsp1720I	GCTNAGC	2 cut(s)	204, 650
BspACI	CCGC	2 cut(s)	41, 350
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	617, 663
BspLI	GGNNCC	2 cut(s)	405, 462
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	3 cut(s)	196, 375, 456
BspQI	GCTCTTC	1 cut(s)	595
BspT107I	GGYRCC	1 cut(s)	460
BsrDI	GCAATG	2 cut(s)	596, 762
BsrI	ACTGG	2 cut(s)	254, 315
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
BssT1I	CCWWGG	1 cut(s)	407
Bst4CI	ACNGT	3 cut(s)	295, 486, 646
Bst6I	CTCTTC	2 cut(s)	595, 771
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstC8I	GCNNGC	2 cut(s)	210, 738
BstDEI	CTNAG	6 cut(s)	12, 204, 435, 473, 604, 650
BstHHI	GCGC	2 cut(s)	87, 736
BstKTI	GATC	6 cut(s)	145, 191, 370, 451, 696, 877
BstMBI	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	463
BstV2I	GAAGAC	1 cut(s)	874
BstX2I	RGATCY	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	1 cut(s)	44
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	261, 267
Cac8I	GCNNGC	2 cut(s)	210, 738
CaiI	CAGNNNCTG	3 cut(s)	758, 773, 809
CfoI	GCGC	2 cut(s)	87, 736
Cfr13I	GGNCC	2 cut(s)	43, 222
Csp6I	GTAC	3 cut(s)	59, 114, 439
CviAII	CATG	4 cut(s)	68, 505, 691, 703
CviQI	GTAC	3 cut(s)	59, 114, 439
DdeI	CTNAG	6 cut(s)	12, 204, 435, 473, 604, 650
DpnI	GATC	6 cut(s)	144, 190, 369, 450, 695, 876
DpnII	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
Eam1104I	CTCTTC	2 cut(s)	595, 771
EarI	CTCTTC	2 cut(s)	595, 771
Eco130I	CCWWGG	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	3 cut(s)	555, 795, 831
EcoRI	GAATTC	2 cut(s)	549, 622
EcoT14I	CCWWGG	1 cut(s)	407
ErhI	CCWWGG	1 cut(s)	407
FaeI	CATG	4 cut(s)	71, 508, 694, 706
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 574, 606
FatI	CATG	4 cut(s)	67, 504, 690, 702
FbaI	TGATCA	1 cut(s)	693
FspBI	CTAG	3 cut(s)	192, 524, 630
FspI	TGCGCA	1 cut(s)	735
GlaI	GCGC	2 cut(s)	86, 735
GsuI	CTGGAG	2 cut(s)	12, 75
HaeIII	GGCC	1 cut(s)	44
HhaI	GCGC	2 cut(s)	87, 736
Hin1II	CATG	4 cut(s)	71, 508, 694, 706
Hin6I	GCGC	2 cut(s)	85, 734
HinP1I	GCGC	2 cut(s)	85, 734
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	25, 341, 543
Hpy166II	GTNNAC	3 cut(s)	24, 298, 489
Hpy188I	TCNGA	5 cut(s)	100, 418, 548, 574, 607
Hpy188III	TCNNGA	4 cut(s)	29, 697, 713, 878
Hpy8I	GTNNAC	3 cut(s)	24, 298, 489
HpyAV	CCTTC	3 cut(s)	193, 394, 602
HpyCH4III	ACNGT	3 cut(s)	295, 486, 646
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	9 cut(s)	124, 179, 212, 272, 334, 359, 680, 767, 836
HpyF3I	CTNAG	6 cut(s)	12, 204, 435, 473, 604, 650
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	4 cut(s)	71, 508, 694, 706
HspAI	GCGC	2 cut(s)	85, 734
Ksp22I	TGATCA	1 cut(s)	693
Kzo9I	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
LguI	GCTCTTC	1 cut(s)	595
LmnI	GCTCC	3 cut(s)	13, 403, 699
LpnPI	CCDG	7 cut(s)	39, 42, 60, 267, 321, 328, 682
LweI	GCATC	3 cut(s)	133, 301, 667
MaeI	CTAG	3 cut(s)	192, 524, 630
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	3 cut(s)	172, 242, 262
MalI	GATC	6 cut(s)	144, 190, 369, 450, 695, 876
MboI	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
MboII	GAAGA	8 cut(s)	44, 47, 299, 582, 594, 631, 788, 879
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	3 cut(s)	10, 463, 651
MluCI	AATT	4 cut(s)	354, 394, 549, 622
MlyI	GAGTC	2 cut(s)	19, 350
MmeI	TCCRAC	2 cut(s)	254, 345
MnlI	CCTC	7 cut(s)	376, 439, 626, 709, 772, 784, 790
MroXI	GAANNNNTTC	1 cut(s)	589
MseI	TTAA	4 cut(s)	48, 63, 497, 528
MslI	CAYNNNNRTG	2 cut(s)	170, 859
MspA1I	CMGCKG	1 cut(s)	770
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	654
NdeII	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
NlaIII	CATG	4 cut(s)	71, 508, 694, 706
NlaIV	GGNNCC	2 cut(s)	405, 462
NmuCI	GTSAC	3 cut(s)	172, 242, 262
NsbI	TGCGCA	1 cut(s)	735
PciSI	GCTCTTC	1 cut(s)	595
PctI	GAATGC	1 cut(s)	654
PdmI	GAANNNNTTC	1 cut(s)	589
PfeI	GAWTC	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	340
PleI	GAGTC	2 cut(s)	19, 349
PpsI	GAGTC	2 cut(s)	19, 349
PspN4I	GGNNCC	2 cut(s)	405, 462
PspPI	GGNCC	2 cut(s)	43, 222
PstI	CTGCAG	1 cut(s)	274
PstNI	CAGNNNCTG	3 cut(s)	758, 773, 809
PsuI	RGATCY	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	3 cut(s)	60, 115, 440
RsaNI	GTAC	3 cut(s)	59, 114, 439
RseI	CAYNNNNRTG	2 cut(s)	170, 859
SapI	GCTCTTC	1 cut(s)	595
SaqAI	TTAA	4 cut(s)	48, 63, 497, 528
Sau3AI	GATC	6 cut(s)	142, 188, 367, 448, 693, 874
Sau96I	GGNCC	2 cut(s)	43, 222
ScaI	AGTACT	1 cut(s)	60
SchI	GAGTC	2 cut(s)	19, 350
SduI	GDGCHC	3 cut(s)	10, 463, 651
SfaNI	GCATC	3 cut(s)	133, 301, 667
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	222
SmiMI	CAYNNNNRTG	2 cut(s)	170, 859
SmlI	CTYRAG	2 cut(s)	146, 711
SmoI	CTYRAG	2 cut(s)	146, 711
SpeI	ACTAGT	1 cut(s)	523
Sse9I	AATT	4 cut(s)	354, 394, 549, 622
SsiI	CCGC	2 cut(s)	41, 350
SspMI	CTAG	3 cut(s)	192, 524, 630
StyI	CCWWGG	1 cut(s)	407
TaaI	ACNGT	3 cut(s)	295, 486, 646
TaiI	ACGT	1 cut(s)	244
TasI	AATT	4 cut(s)	354, 394, 549, 622
TatI	WGTACW	2 cut(s)	58, 438
TauI	GCSGC	2 cut(s)	44, 352
TfiI	GAWTC	1 cut(s)	543
Tru1I	TTAA	4 cut(s)	48, 63, 497, 528
Tru9I	TTAA	4 cut(s)	48, 63, 497, 528
TscAI	CASTG	2 cut(s)	261, 267
TseFI	GTSAC	3 cut(s)	172, 242, 262
Tsp45I	GTSAC	3 cut(s)	172, 242, 262
TspDTI	ATGAA	2 cut(s)	300, 899
TspRI	CASTG	2 cut(s)	261, 267
Tth111I	GACNNNGTC	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	222
XapI	RAATTY	3 cut(s)	394, 549, 622
XmnI	GAANNNNTTC	1 cut(s)	589
XspI	CTAG	3 cut(s)	192, 524, 630
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.