Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

17007405 .. 17011915

Gene Structure 4511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1186900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGGTGCTCCTAAGCAGAAGTGGACCTCCGAAGAAGAAGAAGCCCTTAAAGCTGGAGTACTTAAACATGGGGCAGGAAAATGGCGCACAATACTGACAGATCCAGAATTCAATACTATCTTACATCTGCGTTCAAATGTTGATCTCAAGGACAAGTGGAGAAACATAAATGTGACTGCAATATGGGGTTCTAGACAGAAGGCTAAGCTTGCACTTAAAAGGAACTTACCAACTCCTAAACATGAGAATAACAATAACCCTTTGGCTGTGAGCACTATAATCCAAAGTCATAAAGAGGTGGTTGACGCTAAGCCTCTTGCCATTTCTGGTGGAAAGTCGCAGACTACTGAATCAAAAGATTCAAAACATCCAATTTCCAGGTTGGATCACCTTATATTAGAAGCTATTACAAATTTGAAGGAGCCAGGGGGTTCTGACAGAGCTGCAATTGTTATGTACATAGAGGAGCAATATTGGGCACCACCAAACCTAAAAAAGCTACTGTCATCAAAATTAAAGCATATGACAACCAACAGAAAGCTGGTTAAGGTAAAGCATAGATACAGAATTCCAGCAACTTCTGAAAAAAGAAGAAGCTCTTCAGCATTGCTTCCCGATGGAAAGCAGAAGGATTCATCAAGAACAGATAAGAGTGACGTCAACATCCTTACTAAATCCCAAGTAGATGCAGATTTAACCAAGATGAGAAGCATGACTGCACAAGAGGCTGCTGCTGCTGCTGCACAGGCGGTAGCAGAGGCAGAGGCTGCCATCGCAGCAGCTGAAGAAGCGGCAAGGGAGGCGGAGGCGGCAGAAGCTGAAGCAGAAGCAGCACAAGTTTTTGCCAAAGCAGCAATGAAAGCGTTGAAGTGTAGAAAACTTGACCTTCACATGAAACTCTCACATGGGTTAACTCATTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

308

Amino Acids

33.76

Weight (kDa)

9.67

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 55	7.9e-08	Myb-like DNA-binding domain
Linker_histone	PF00538	129 - 185	1.8e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	478
AciI	CCGC	4 cut(s)	749, 791, 803, 809
AclWI	GGATC	2 cut(s)	95, 393
AcsI	RAATTY	3 cut(s)	107, 412, 567
AcuI	CTGAAG	3 cut(s)	585, 804, 840
AcyI	GRCGYC	1 cut(s)	657
AfaI	GTAC	2 cut(s)	60, 458
AgsI	TTSAA	5 cut(s)	112, 135, 363, 418, 868
AjnI	CCWGG	2 cut(s)	377, 424
AluBI	AGCT	9 cut(s)	53, 208, 404, 443, 499, 541, 597, 782, 818
AluI	AGCT	9 cut(s)	53, 208, 404, 443, 499, 541, 597, 782, 818
Alw21I	GWGCWC	2 cut(s)	10, 275
AlwI	GGATC	2 cut(s)	95, 393
AlwNI	CAGNNNCTG	3 cut(s)	767, 782, 818
ApoI	RAATTY	3 cut(s)	107, 412, 567
Asp700I	GAANNNNTTC	1 cut(s)	598
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	380
AvaII	GGWCC	1 cut(s)	24
BaeGI	GKGCMC	1 cut(s)	481
BanI	GGYRCC	1 cut(s)	478
Bbv12I	GWGCWC	2 cut(s)	10, 275
BccI	CCATC	2 cut(s)	611, 779
BciT130I	CCWGG	2 cut(s)	379, 426
BfaI	CTAG	1 cut(s)	192
BlpI	GCTNAGC	2 cut(s)	204, 309
BmcAI	AGTACT	1 cut(s)	60
Bme1390I	CCNGG	2 cut(s)	379, 426
Bme18I	GGWCC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	423, 480
BmrFI	CCNGG	2 cut(s)	379, 426
BmsI	GCATC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	12
Bpu1102I	GCTNAGC	2 cut(s)	204, 309
BpuEI	CTTGAG	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	657
BsaJI	CCNNGG	1 cut(s)	425
Bse3DI	GCAATG	2 cut(s)	605, 861
BseBI	CCWGG	2 cut(s)	379, 426
BseDI	CCNNGG	1 cut(s)	425
BseGI	GGATG	2 cut(s)	367, 663
BseMI	GCAATG	2 cut(s)	605, 861
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	481
BsgI	GTGCAG	2 cut(s)	702, 726
BshNI	GGYRCC	1 cut(s)	478
BsiHKAI	GWGCWC	2 cut(s)	10, 275
Bsp1286I	GDGCHC	3 cut(s)	10, 275, 481
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	100, 142, 385
Bsp1720I	GCTNAGC	2 cut(s)	204, 309
BspACI	CCGC	4 cut(s)	749, 791, 803, 809
BspLI	GGNNCC	2 cut(s)	423, 480
BspPI	GGATC	2 cut(s)	95, 393
BspQI	GCTCTTC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	478
BsrDI	GCAATG	2 cut(s)	605, 861
BsrGI	TGTACA	1 cut(s)	456
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	3 cut(s)	100, 142, 385
BssNI	GRCGYC	1 cut(s)	657
Bst2UI	CCWGG	2 cut(s)	379, 426
Bst4CI	ACNGT	1 cut(s)	504
Bst6I	CTCTTC	1 cut(s)	604
BstACI	GRCGYC	1 cut(s)	657
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	3 cut(s)	12, 204, 309
BstF5I	GGATG	2 cut(s)	367, 663
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	103, 145, 388
BstMBI	GATC	3 cut(s)	100, 142, 385
BstNI	CCWGG	2 cut(s)	379, 426
BstSCI	CCNGG	2 cut(s)	377, 424
BstSLI	GKGCMC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	757
BtsCI	GGATG	2 cut(s)	367, 663
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	3 cut(s)	767, 782, 818
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	1 cut(s)	24
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	59, 457
CviAII	CATG	5 cut(s)	68, 242, 712, 892, 905
CviQI	GTAC	2 cut(s)	59, 457
DdeI	CTNAG	3 cut(s)	12, 204, 309
DpnI	GATC	3 cut(s)	102, 144, 387
DpnII	GATC	3 cut(s)	100, 142, 385
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
EciI	GGCGGA	1 cut(s)	818
Eco47I	GGWCC	1 cut(s)	24
Eco57I	CTGAAG	3 cut(s)	585, 804, 840
EcoRI	GAATTC	2 cut(s)	107, 567
EcoRII	CCWGG	2 cut(s)	377, 424
FaeI	CATG	5 cut(s)	71, 245, 715, 895, 908
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 583, 615
FatI	CATG	5 cut(s)	67, 241, 711, 891, 904
FauNDI	CATATG	1 cut(s)	522
FokI	GGATG	2 cut(s)	354, 650
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	657
Hin1II	CATG	5 cut(s)	71, 245, 715, 895, 908
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	3 cut(s)	304, 661, 912
HindII	GTYRAC	3 cut(s)	304, 661, 912
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	3 cut(s)	350, 359, 632
HpaI	GTTAAC	1 cut(s)	912
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	4 cut(s)	24, 304, 661, 912
Hpy188I	TCNGA	3 cut(s)	31, 436, 583
Hpy188III	TCNNGA	5 cut(s)	104, 192, 614, 639, 921
Hpy8I	GTNNAC	4 cut(s)	24, 304, 661, 912
HpyAV	CCTTC	4 cut(s)	193, 412, 622, 896
HpyCH4III	ACNGT	1 cut(s)	504
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	6 cut(s)	179, 212, 446, 689, 719, 743
HpyF3I	CTNAG	3 cut(s)	12, 204, 309
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	1 cut(s)	657
Hsp92II	CATG	5 cut(s)	71, 245, 715, 895, 908
HspAI	GCGC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	912
Kzo9I	GATC	3 cut(s)	100, 142, 385
LguI	GCTCTTC	1 cut(s)	604
LmnI	GCTCC	3 cut(s)	13, 421, 466
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	2 cut(s)	172, 653
MalI	GATC	3 cut(s)	102, 144, 387
MboI	GATC	3 cut(s)	100, 142, 385
MboII	GAAGA	6 cut(s)	44, 47, 50, 591, 603, 797
MfeI	CAATTG	1 cut(s)	447
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	3 cut(s)	10, 275, 481
MluCI	AATT	6 cut(s)	107, 372, 412, 447, 512, 567
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	9 cut(s)	37, 289, 324, 457, 718, 751, 757, 793, 799
MroXI	GAANNNNTTC	1 cut(s)	598
MseI	TTAA	7 cut(s)	48, 63, 216, 515, 546, 695, 911
MslI	CAYNNNNRTG	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	782
MspR9I	CCNGG	2 cut(s)	379, 426
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	379, 426
NdeI	CATATG	1 cut(s)	522
NdeII	GATC	3 cut(s)	100, 142, 385
NlaIII	CATG	5 cut(s)	71, 245, 715, 895, 908
NlaIV	GGNNCC	2 cut(s)	423, 480
NmuCI	GTSAC	2 cut(s)	172, 653
PciSI	GCTCTTC	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	598
PfeI	GAWTC	3 cut(s)	350, 359, 632
Psp6I	CCWGG	2 cut(s)	377, 424
PspGI	CCWGG	2 cut(s)	377, 424
PspN4I	GGNNCC	2 cut(s)	423, 480
PspPI	GGNCC	1 cut(s)	24
PstNI	CAGNNNCTG	3 cut(s)	767, 782, 818
PsuI	RGATCY	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	60, 458
RsaNI	GTAC	2 cut(s)	59, 457
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	604
SaqAI	TTAA	7 cut(s)	48, 63, 216, 515, 546, 695, 911
Sau3AI	GATC	3 cut(s)	100, 142, 385
Sau96I	GGNCC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	379, 426
SduI	GDGCHC	3 cut(s)	10, 275, 481
SfaNI	GCATC	1 cut(s)	676
SinI	GGWCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	6 cut(s)	107, 372, 412, 447, 512, 567
SsiI	CCGC	4 cut(s)	749, 791, 803, 809
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	377, 424
TaaI	ACNGT	1 cut(s)	504
TaiI	ACGT	1 cut(s)	660
TasI	AATT	6 cut(s)	107, 372, 412, 447, 512, 567
TatI	WGTACW	2 cut(s)	58, 456
TauI	GCSGC	2 cut(s)	794, 812
TfiI	GAWTC	3 cut(s)	350, 359, 632
Tru1I	TTAA	7 cut(s)	48, 63, 216, 515, 546, 695, 911
Tru9I	TTAA	7 cut(s)	48, 63, 216, 515, 546, 695, 911
TseFI	GTSAC	2 cut(s)	172, 653
Tsp45I	GTSAC	2 cut(s)	172, 653
TspDTI	ATGAA	3 cut(s)	624, 872, 908
VpaK11BI	GGWCC	1 cut(s)	24
XapI	RAATTY	3 cut(s)	107, 412, 567
XbaI	TCTAGA	1 cut(s)	191
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	598
XspI	CTAG	1 cut(s)	192
ZraI	GACGTC	1 cut(s)	658
ZrmI	AGTACT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.