Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008296

Physical Location & Seq

Genomic Coordinates Reverse (-)

13400636 .. 13406738

Gene Structure 6103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0151300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGCACACTGCAGGAAGCAAAAAGTTTCTGCCTAATCCAGTCCTGCTGCAAGATGAGGAATTACACAAGTATATACTAGAAACTAGTGTGTACCCTCGAGAACCAGAGCCACTCAAGGAGCTGAGGGAAGCCACTGCAGAACTCCCCAATGCTTTCTTTGGGACTGCACCTGATGCAGGTCAGCTAATGGCCGTGCTCTTGAAACTTGTGAATGCAAAGAAGACAATCGAAGTTGGAGTTTTTACTGGATATTCTCTTCTGCTTACGGCTCTCACAATCCCTGACGACGGCAAGATTATGGCCATAGATAGAAATCGTAAGACATACGAAATAGGCCTCCCAATCATACAAAAAGCCGGAGTTGAGTACAAAATCGACTACATCGAATCCCCGGCTCTGCCTGTCCTTGACAATCTTTTGGGAGAACCAAAGAATGAGGGTGATTTCGACTTTGCATTTGTCGATGCTGACAAAGATAACTATTGGAATTATCATGAGAGGCCACTATGCCAAAAAATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000781 GO:0000784 GO:0000785 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009737 GO:0009739 GO:0009751 GO:0009753 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031627 GO:0031974 GO:0031981 GO:0032200 GO:0033993 GO:0034641 GO:0042162 GO:0042221 GO:0042493 GO:0042592 GO:0042802 GO:0042803 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046677 GO:0046686 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0097305 GO:0098687 GO:0098847 GO:0140110 GO:1901360 GO:1901363 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone Myb_DNA-binding

Protein Analysis

175

Amino Acids

19.74

Weight (kDa)

4.85

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_3	PF01596	28 - 170	2.6e-50	O-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67580 AT5G67580
fragaria_vesca	FvH4_1g17790 FvH4_1g17790 FvH4_1g17790
malus_domestica	MD02G1186900.v1.1 MD15G1298000.v1.1
prunus_persica	Prupe.6G219800_v2.0.a1 Prupe.6G219800_v2.0.a1
pyrus_communis	pycom02g15190
rosa_chinensis	RchiOBHm_Chr2g0108241
rosa_laevigata	RLG00000017649
rosa_multiflora	Rmu_co8487831.1_g000001 Rmu_sc0007406.1_g000009
rosa_roxburghii	Rroxscaffold_2G00135460
rosa_rugosa	Rorug02G0151300 Rorug02G0151400 Rorug02G0151400
rosa_samantha	Rh2AG199900 Rh2BG212600 Rh2CG204600 Rh2DG207500
rosa_wichuraiana	Rw2G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AcoI	YGGCCR	2 cut(s)	192, 303
AfaI	GTAC	2 cut(s)	95, 371
AfiI	CCNNNNNNNGG	2 cut(s)	179, 290
AgsI	TTSAA	1 cut(s)	205
AhlI	ACTAGT	1 cut(s)	86
AluBI	AGCT	2 cut(s)	124, 187
AluI	AGCT	2 cut(s)	124, 187
Alw21I	GWGCWC	2 cut(s)	9, 201
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	4 cut(s)	192, 303, 337, 503
ApeKI	GCWGC	1 cut(s)	49
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	2 cut(s)	9, 201
BbvCI	CCTCAGC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	36
BceAI	ACGGC	3 cut(s)	179, 285, 307
BcnI	CCSGG	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	86
BfaI	CTAG	2 cut(s)	80, 87
BfmI	CTRYAG	3 cut(s)	12, 138, 524
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	395
BmeT110I	CYCGRG	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	395
BmsI	GCATC	2 cut(s)	166, 457
BpiI	GAAGAC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	1 cut(s)	393
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 290
Bse1I	ACTGG	2 cut(s)	41, 253
Bse8I	GATNNNNATC	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	179, 290
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	41, 253
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	194, 305, 339, 505
BsiHKAI	GWGCWC	2 cut(s)	9, 201
BsiHKCI	CYCGRG	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	360, 395
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	179, 290
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	194, 305, 339, 505
BsoBI	CYCGRG	1 cut(s)	99
Bsp1286I	GDGCHC	2 cut(s)	9, 201
BspANI	GGCC	4 cut(s)	194, 305, 339, 505
BspCNI	CTCAG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	496
BspMAI	CTGCAG	2 cut(s)	16, 142
BspMI	ACCTGC	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	41, 253
BssECI	CCNNGG	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	125
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	3 cut(s)	12, 138, 524
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	230
BsuRI	GGCC	4 cut(s)	194, 305, 339, 505
BtsI	GCAGTG	2 cut(s)	9, 135
BtsIMutI	CAGTG	2 cut(s)	9, 135
BveI	ACCTGC	1 cut(s)	170
CciI	TCATGA	1 cut(s)	496
Csp6I	GTAC	2 cut(s)	94, 370
CviAII	CATG	1 cut(s)	497
CviQI	GTAC	2 cut(s)	94, 370
DdeI	CTNAG	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	192, 303
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	99
EcoNI	CCTNNNNNAGG	1 cut(s)	177
FaeI	CATG	1 cut(s)	500
FaiI	YATR	8 cut(s)	75, 77, 302, 308, 328, 350, 498, 511
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	1 cut(s)	496
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	2 cut(s)	80, 87
GluI	GCNGC	1 cut(s)	50
HaeIII	GGCC	4 cut(s)	194, 305, 339, 505
HapII	CCGG	2 cut(s)	360, 395
Hin1II	CATG	1 cut(s)	500
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	2 cut(s)	360, 395
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	3 cut(s)	101, 202, 497
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	293
HpyCH4V	TGCA	7 cut(s)	14, 52, 140, 170, 179, 218, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	176
HpyF3I	CTNAG	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	500
LmnI	GCTCC	2 cut(s)	4, 121
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	2 cut(s)	166, 457
MaeI	CTAG	2 cut(s)	80, 87
MboII	GAAGA	2 cut(s)	235, 251
MhlI	GDGCHC	2 cut(s)	9, 201
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	2 cut(s)	62, 490
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	52, 108, 120, 350, 433, 495
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	2 cut(s)	360, 395
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	395
NlaIII	CATG	1 cut(s)	500
PaeR7I	CTCGAG	1 cut(s)	99
PagI	TCATGA	1 cut(s)	496
PceI	AGGCCT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	51
PstI	CTGCAG	2 cut(s)	16, 142
RsaI	GTAC	2 cut(s)	95, 371
RsaNI	GTAC	2 cut(s)	94, 370
SatI	GCNGC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	2 cut(s)	9, 201
SetI	ASST	4 cut(s)	126, 175, 184, 189
SfaNI	GCATC	2 cut(s)	166, 457
SfcI	CTRYAG	3 cut(s)	12, 138, 524
Sfr274I	CTCGAG	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	99, 116
SmoI	CTYRAG	2 cut(s)	99, 116
SpeI	ACTAGT	1 cut(s)	86
Sse9I	AATT	2 cut(s)	62, 490
SseBI	AGGCCT	1 cut(s)	339
SspMI	CTAG	2 cut(s)	80, 87
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	393
TaqI	TCGA	6 cut(s)	100, 231, 378, 387, 450, 465
TasI	AATT	2 cut(s)	62, 490
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	389
TscAI	CASTG	2 cut(s)	16, 142
TseI	GCWGC	1 cut(s)	49
TspRI	CASTG	2 cut(s)	16, 142
XagI	CCTNNNNNAGG	1 cut(s)	177
XhoI	CTCGAG	1 cut(s)	99
XspI	CTAG	2 cut(s)	80, 87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.