Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015226

Physical Location & Seq

Genomic Coordinates Forward (+)

161693 .. 169674

Gene Structure 7982 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

ATGTTAGAACATTTCTGTGAATGCTATTCTAATCTAAGTGGTCTTATTCTGTGTCCTGTGCTAGGAAGCATTACTCTTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATTGGTCTGTGTGCCTCTCTTATTACTTTTTTGTATTCTCCTGTTCCTCGGATACAATTCGACTCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCAATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATTTTTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTAGATCTTCTACTATTCTATGTTTTTCCCGAAAGCGTGCCAATCCCTATGTTCATTATTATAGGAGTATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTCTTTTTATGCTATTAGCTATTCTGTTGATTCTTTTCCAAACAGGAACCACCGATTTACAAATATCATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTCTTTCGCCGTCAAAGTGCCTATGGTACCAGTTCATATTTGGTTACCTGAAGCTCATGTAGAGGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCTTTAAAATTTGGAACCCACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTTGTTCTACTCCTTTCATTTATACTTTAAGCGCGATTGCTATAATATATACTTCCTTGACCACTTCAAGACAGATCGATCTAAAGAAGATCATTGCTTACTCCTCAGTAGCCCATATGAATCTGGTGACTATTGGTATGTTTAGTCCGAACATACAGGGAATTGGAGGTAGCATTCTACCGATGTTAAGTCATGGACTGGTTCCTTCAGCCCTTTTTCTATGTGTTGGTGTTTTATATGACCGACATAAGACTCGACTTGTTAGATATTACGGAGGTTTAGTGAGCACCATGCCGAATCTCTCTACCATTTTCTTTTCTTTTACTTTGGCCAATATGAGTTCACCTGGTACTAGCAGCTTTATCGGGGAATTTCTCATCTTAGTAGGAGCTTTCCAAAGAAATAGCTTAGTAGCCACATTAGCAGCGCTTGGGATGATTTTAGGTGCGGCCTATTCCCTTTGGCTATATAATCGTGTGGTTTCTGGAAATTTAAAACCTGATTTCCTCCATAAATTCTCCGATTCAAATGGCAGAGAAGTTTCCATATTTATACCTTTTCTTGTTGGACTCGTTCGGATGGGTGTTCACCCCAAAGTGTTCCCGGACTGCATGCATACATCCGTAAGTAACTTAGTGCAACATGGCAAATTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

495

Amino Acids

55.23

Weight (kDa)

9.27

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proton_antipo_M	PF00361	138 - 419	6.7e-74	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00580
pyrus_communis	pycom10g06610 pycom12401g00210 pycom12401g00220
rosa_chinensis	RchiOBHm_MTg0498651 RchiOBHm_MTg0498681 RchiOBHm_MTg0498711
rosa_laevigata	RLG00000000440 RLG00000000443 RLG00000000468
rosa_samantha	Rh2DG505800 Rh3AG226300 Rh3BG259100 Rh3DG250700 Rh4AG240500 Rh4BG243600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	691
AccB1I	GGYRCC	3 cut(s)	633, 691, 730
AccBSI	CCGCTC	1 cut(s)	631
AccII	CGCG	1 cut(s)	863
AciI	CCGC	3 cut(s)	403, 631, 1277
AclWI	GGATC	4 cut(s)	295, 547, 738, 751
AcoI	YGGCCR	2 cut(s)	189, 1158
AcsI	RAATTY	9 cut(s)	91, 380, 620, 762, 773, 1199, 1318, 1343, 1478
AcuI	CTGAAG	2 cut(s)	735, 1020
AcyI	GRCGYC	1 cut(s)	634
AfaI	GTAC	2 cut(s)	693, 1180
AfeI	AGCGCT	1 cut(s)	1257
AfiI	CCNNNNNNNGG	2 cut(s)	62, 740
AgsI	TTSAA	4 cut(s)	96, 804, 897, 1356
AjnI	CCWGG	1 cut(s)	1174
AluBI	AGCT	5 cut(s)	560, 719, 1188, 1220, 1236
AluI	AGCT	5 cut(s)	560, 719, 1188, 1220, 1236
Alw21I	GWGCWC	1 cut(s)	1118
Alw26I	GTCTC	1 cut(s)	481
AlwI	GGATC	4 cut(s)	295, 547, 738, 751
Aor51HI	AGCGCT	1 cut(s)	1257
AoxI	GGCC	3 cut(s)	189, 1158, 1278
ApeKI	GCWGC	3 cut(s)	506, 1185, 1253
ApoI	RAATTY	9 cut(s)	91, 380, 620, 762, 773, 1199, 1318, 1343, 1478
AseI	ATTAAT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	213
Asp718I	GGTACC	1 cut(s)	691
AspLEI	GCGC	3 cut(s)	636, 863, 1258
AsuC2I	CCSGG	1 cut(s)	1433
AsuHPI	GGTGA	3 cut(s)	967, 1164, 1409
BalI	TGGCCA	1 cut(s)	1160
BamHI	GGATCC	1 cut(s)	743
BanI	GGYRCC	3 cut(s)	633, 691, 730
Bbv12I	GWGCWC	1 cut(s)	1118
BbvI	GCAGC	3 cut(s)	518, 1197, 1265
BccI	CCATC	2 cut(s)	213, 1402
BceAI	ACGGC	4 cut(s)	204, 380, 659, 753
BcgI	CGANNNNNNTGC	2 cut(s)	1174, 1208
BciT130I	CCWGG	1 cut(s)	1176
BciVI	GTATCC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	1433
BcoDI	GTCTC	1 cut(s)	481
BfaI	CTAG	3 cut(s)	62, 410, 1182
BfoI	RGCGCY	2 cut(s)	637, 1259
BfuI	GTATCC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	5 cut(s)	507, 632, 1186, 1254, 1278
BlsI	GCNGC	5 cut(s)	508, 633, 1187, 1255, 1279
Bme1390I	CCNGG	2 cut(s)	1176, 1433
BmiI	GGNNCC	7 cut(s)	589, 635, 693, 732, 745, 781, 1032
BmrFI	CCNGG	2 cut(s)	1176, 1433
BpuMI	CCSGG	1 cut(s)	1433
Bsa29I	ATCGAT	1 cut(s)	906
BsaHI	GRCGYC	1 cut(s)	634
BsaJI	CCNNGG	2 cut(s)	164, 784
BsaXI	ACNNNNNCTCC	2 cut(s)	1095, 1125
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 740
Bse1I	ACTGG	2 cut(s)	695, 1032
Bse3DI	GCAATG	1 cut(s)	921
BseBI	CCWGG	1 cut(s)	1176
BseCI	ATCGAT	1 cut(s)	906
BseDI	CCNNGG	2 cut(s)	164, 784
BseGI	GGATG	3 cut(s)	1269, 1413, 1448
BseLI	CCNNNNNNNGG	2 cut(s)	62, 740
BseMI	GCAATG	1 cut(s)	921
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	2 cut(s)	695, 1032
BseRI	GAGGAG	1 cut(s)	922
BseXI	GCAGC	3 cut(s)	518, 1197, 1265
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	191, 1160, 1280
BshNI	GGYRCC	3 cut(s)	633, 691, 730
BshVI	ATCGAT	1 cut(s)	906
BsiEI	CGRYCG	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	1118
BsiSI	CCGG	1 cut(s)	1433
BslI	CCNNNNNNNGG	2 cut(s)	62, 740
BsmAI	GTCTC	1 cut(s)	481
BsmI	GAATGC	2 cut(s)	26, 1002
BsnI	GGCC	3 cut(s)	191, 1160, 1280
Bsp1286I	GDGCHC	1 cut(s)	1118
Bsp143I	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
BspACI	CCGC	3 cut(s)	403, 631, 1277
BspANI	GGCC	3 cut(s)	191, 1160, 1280
BspCNI	CTCAG	1 cut(s)	947
BspDI	ATCGAT	1 cut(s)	906
BspFNI	CGCG	1 cut(s)	863
BspLI	GGNNCC	7 cut(s)	589, 635, 693, 732, 745, 781, 1032
BspPI	GGATC	4 cut(s)	295, 547, 738, 751
BspT107I	GGYRCC	3 cut(s)	633, 691, 730
BsrBI	CCGCTC	1 cut(s)	631
BsrDI	GCAATG	1 cut(s)	921
BsrI	ACTGG	2 cut(s)	695, 1032
BssECI	CCNNGG	2 cut(s)	164, 784
BssMI	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
BssNI	GRCGYC	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	1176
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	81, 187
BstACI	GRCGYC	1 cut(s)	634
BstC8I	GCNNGC	3 cut(s)	407, 446, 1442
BstDEI	CTNAG	5 cut(s)	35, 934, 1210, 1237, 1462
BstDSI	CCRYGG	1 cut(s)	784
BstEII	GGTNACC	1 cut(s)	708
BstENI	CCTNNNNNAGG	2 cut(s)	60, 738
BstF5I	GGATG	3 cut(s)	1269, 1413, 1448
BstFNI	CGCG	1 cut(s)	863
BstH2I	RGCGCY	2 cut(s)	637, 1259
BstHHI	GCGC	3 cut(s)	636, 863, 1258
BstKTI	GATC	9 cut(s)	303, 393, 415, 501, 542, 746, 906, 910, 921
BstMAI	GTCTC	1 cut(s)	481
BstMBI	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	4 cut(s)	662, 671, 737, 1250
BstNI	CCWGG	1 cut(s)	1176
BstNSI	RCATGY	2 cut(s)	409, 1444
BstPI	GGTNACC	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	1174, 1431
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	3 cut(s)	518, 1197, 1265
BstX2I	RGATCY	3 cut(s)	412, 539, 743
BstYI	RGATCY	3 cut(s)	412, 539, 743
Bsu15I	ATCGAT	1 cut(s)	906
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	3 cut(s)	191, 1160, 1280
BsuTUI	ATCGAT	1 cut(s)	906
BtgI	CCRYGG	1 cut(s)	784
BtsCI	GGATG	3 cut(s)	1269, 1413, 1448
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	3 cut(s)	407, 446, 1442
CfoI	GCGC	3 cut(s)	636, 863, 1258
ClaI	ATCGAT	1 cut(s)	906
CsiI	ACCWGGT	1 cut(s)	1174
Csp6I	GTAC	2 cut(s)	692, 1179
CviAII	CATG	7 cut(s)	406, 722, 811, 1022, 1120, 1441, 1472
CviQI	GTAC	2 cut(s)	692, 1179
DdeI	CTNAG	5 cut(s)	35, 934, 1210, 1237, 1462
DinI	GGCGCC	1 cut(s)	635
DpnI	GATC	9 cut(s)	302, 392, 414, 500, 541, 745, 905, 909, 920
DpnII	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
DraI	TTTAAA	2 cut(s)	771, 1323
EaeI	YGGCCR	2 cut(s)	189, 1158
Eam1104I	CTCTTC	2 cut(s)	81, 187
EarI	CTCTTC	2 cut(s)	81, 187
Eco47III	AGCGCT	1 cut(s)	1257
Eco57I	CTGAAG	2 cut(s)	735, 1020
Eco91I	GGTNACC	1 cut(s)	708
EcoNI	CCTNNNNNAGG	2 cut(s)	60, 738
EcoO65I	GGTNACC	1 cut(s)	708
EcoRI	GAATTC	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	1174
EcoT22I	ATGCAT	1 cut(s)	1446
EgeI	GGCGCC	1 cut(s)	635
EheI	GGCGCC	1 cut(s)	635
FaeI	CATG	7 cut(s)	409, 725, 814, 1025, 1123, 1444, 1475
FalI	AAGNNNNNCTT	2 cut(s)	813, 845
FatI	CATG	7 cut(s)	405, 721, 810, 1021, 1119, 1440, 1471
FauNDI	CATATG	1 cut(s)	945
Fnu4HI	GCNGC	5 cut(s)	507, 632, 1186, 1254, 1278
FokI	GGATG	3 cut(s)	1276, 1420, 1435
Fsp4HI	GCNGC	5 cut(s)	507, 632, 1186, 1254, 1278
FspBI	CTAG	3 cut(s)	62, 410, 1182
GlaI	GCGC	3 cut(s)	635, 862, 1257
GluI	GCNGC	5 cut(s)	507, 632, 1186, 1254, 1278
HaeII	RGCGCY	2 cut(s)	637, 1259
HaeIII	GGCC	3 cut(s)	191, 1160, 1280
HapII	CCGG	1 cut(s)	1433
HhaI	GCGC	3 cut(s)	636, 863, 1258
Hin1I	GRCGYC	1 cut(s)	634
Hin1II	CATG	7 cut(s)	409, 725, 814, 1025, 1123, 1444, 1475
Hin6I	GCGC	3 cut(s)	634, 861, 1256
HinP1I	GCGC	3 cut(s)	634, 861, 1256
HinfI	GANTC	7 cut(s)	179, 571, 949, 1081, 1126, 1352, 1398
HpaII	CCGG	1 cut(s)	1433
HphI	GGTGA	3 cut(s)	967, 1164, 1409
Hpy166II	GTNNAC	2 cut(s)	1172, 1417
Hpy188I	TCNGA	5 cut(s)	168, 300, 978, 1351, 1407
Hpy188III	TCNNGA	8 cut(s)	96, 280, 377, 437, 486, 818, 897, 1314
Hpy8I	GTNNAC	2 cut(s)	1172, 1417
HpyAV	CCTTC	2 cut(s)	224, 1044
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	312, 1440, 1444, 1468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	662, 671, 737, 1250
HpyF3I	CTNAG	5 cut(s)	35, 934, 1210, 1237, 1462
Hsp92I	GRCGYC	1 cut(s)	634
Hsp92II	CATG	7 cut(s)	409, 725, 814, 1025, 1123, 1444, 1475
HspAI	GCGC	3 cut(s)	634, 861, 1256
KasI	GGCGCC	1 cut(s)	633
KpnI	GGTACC	1 cut(s)	695
Kzo9I	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
LmnI	GCTCC	1 cut(s)	1217
Lsp1109I	GCAGC	3 cut(s)	518, 1197, 1265
MabI	ACCWGGT	1 cut(s)	1174
MaeI	CTAG	3 cut(s)	62, 410, 1182
MaeIII	GTNAC	3 cut(s)	708, 955, 1457
MalI	GATC	9 cut(s)	302, 392, 414, 500, 541, 745, 905, 909, 920
MbiI	CCGCTC	1 cut(s)	631
MboI	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
MboII	GAAGA	5 cut(s)	68, 174, 268, 407, 928
MflI	RGATCY	3 cut(s)	412, 539, 743
MhlI	GDGCHC	1 cut(s)	1118
MlsI	TGGCCA	1 cut(s)	1160
MluNI	TGGCCA	1 cut(s)	1160
Mly113I	GGCGCC	1 cut(s)	634
MlyI	GAGTC	3 cut(s)	173, 1075, 1392
MmeI	TCCRAC	1 cut(s)	1375
MnlI	CCTC	8 cut(s)	142, 174, 676, 721, 943, 989, 1097, 1346
Mox20I	TGGCCA	1 cut(s)	1160
Mph1103I	ATGCAT	1 cut(s)	1446
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	1160
MseI	TTAA	8 cut(s)	116, 371, 611, 770, 794, 857, 1016, 1322
MslI	CAYNNNNRTG	2 cut(s)	15, 317
Msp20I	TGGCCA	1 cut(s)	1160
MspI	CCGG	1 cut(s)	1433
MspR9I	CCNGG	2 cut(s)	1176, 1433
Mva1269I	GAATGC	2 cut(s)	26, 1002
MvaI	CCWGG	1 cut(s)	1176
MvnI	CGCG	1 cut(s)	863
MwoI	GCNNNNNNNGC	4 cut(s)	662, 671, 737, 1250
NarI	GGCGCC	1 cut(s)	634
NciI	CCSGG	1 cut(s)	1433
NdeI	CATATG	1 cut(s)	945
NdeII	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
NlaIII	CATG	7 cut(s)	409, 725, 814, 1025, 1123, 1444, 1475
NlaIV	GGNNCC	7 cut(s)	589, 635, 693, 732, 745, 781, 1032
NmuCI	GTSAC	1 cut(s)	955
NsiI	ATGCAT	1 cut(s)	1446
NspI	RCATGY	2 cut(s)	409, 1444
PaeI	GCATGC	2 cut(s)	409, 1444
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	2 cut(s)	26, 1002
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	571, 949, 1126, 1352
PfoI	TCCNGGA	1 cut(s)	1431
PkrI	GCNGC	5 cut(s)	508, 633, 1187, 1255, 1279
PleI	GAGTC	3 cut(s)	173, 1075, 1392
PluTI	GGCGCC	1 cut(s)	637
PpsI	GAGTC	3 cut(s)	173, 1075, 1392
PshBI	ATTAAT	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	1174
PspEI	GGTNACC	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	1174
PspN4I	GGNNCC	7 cut(s)	589, 635, 693, 732, 745, 781, 1032
PsuI	RGATCY	3 cut(s)	412, 539, 743
RsaI	GTAC	2 cut(s)	693, 1180
RsaNI	GTAC	2 cut(s)	692, 1179
RseI	CAYNNNNRTG	2 cut(s)	15, 317
SaqAI	TTAA	8 cut(s)	116, 371, 611, 770, 794, 857, 1016, 1322
SatI	GCNGC	5 cut(s)	507, 632, 1186, 1254, 1278
Sau3AI	GATC	9 cut(s)	300, 390, 412, 498, 539, 743, 903, 907, 918
SchI	GAGTC	3 cut(s)	173, 1075, 1392
ScrFI	CCNGG	2 cut(s)	1176, 1433
SduI	GDGCHC	1 cut(s)	1118
SexAI	ACCWGGT	1 cut(s)	1174
SfoI	GGCGCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	15, 317
SphI	GCATGC	2 cut(s)	409, 1444
SsiI	CCGC	3 cut(s)	403, 631, 1277
SspDI	GGCGCC	1 cut(s)	633
SspMI	CTAG	3 cut(s)	62, 410, 1182
StyD4I	CCNGG	2 cut(s)	1174, 1431
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	5 cut(s)	177, 217, 485, 906, 1084
TaqII	GACCGA	2 cut(s)	121, 1086
TauI	GCSGC	2 cut(s)	634, 1280
TfiI	GAWTC	4 cut(s)	571, 949, 1126, 1352
Tru1I	TTAA	8 cut(s)	116, 371, 611, 770, 794, 857, 1016, 1322
Tru9I	TTAA	8 cut(s)	116, 371, 611, 770, 794, 857, 1016, 1322
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	3 cut(s)	506, 1185, 1253
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	7 cut(s)	73, 246, 451, 689, 835, 962, 1472
TspGWI	ACGGA	3 cut(s)	736, 1116, 1441
TspRI	CASTG	1 cut(s)	324
VspI	ATTAAT	1 cut(s)	116
XagI	CCTNNNNNAGG	2 cut(s)	60, 738
XapI	RAATTY	9 cut(s)	91, 380, 620, 762, 773, 1199, 1318, 1343, 1478
XceI	RCATGY	2 cut(s)	409, 1444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	62, 410, 1182
Zsp2I	ATGCAT	1 cut(s)	1446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.