Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0015226

Physical Location & Seq

Genomic Coordinates Forward (+)

987252 .. 988705

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGATCGCCGTGTTCCGCATGCTGGATCCTTTACTATTCTATGTTCTTCCCGAAAGCGTGCTAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATAAAGCTTTTCCTCTGCAGGGGCCTTGTGCATATGTCTCCAGATAGGGCCCCACTAGTCCGGCTAGCTAGTGAGCGGTTCTTTCGGGCGGCCGGGCCCTACGGGCGGGCATCTCCCGCAACGCAAGCTGCATTGTTCGCCACCACCCGAGAAGCAAAAGATTCGAGAGTCCAGGCTGAAAATACATGCATAGATAGTGGTCTAATGACAAAGGCCGACGACGGAAGCTCGGGACGGAGCCGTATGATGCGGAAGTCTCACGTACGGTTCCCTGAGAAGGGAGTGGCTACCTACTGGAGCTTCGACCAACCACCACCGGTTAATTCCGCTTTGGGGCCACCCCTTACTCTACCATTATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

156

Amino Acids

17.02

Weight (kDa)

9.45

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00580
pyrus_communis	pycom10g06610 pycom12401g00210 pycom12401g00220
rosa_chinensis	RchiOBHm_MTg0498651 RchiOBHm_MTg0498681 RchiOBHm_MTg0498711
rosa_laevigata	RLG00000000440 RLG00000000443 RLG00000000468
rosa_samantha	Rh2DG505800 Rh3AG226300 Rh3BG259100 Rh3DG250700 Rh4AG240500 Rh4BG243600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	181
AciI	CCGC	8 cut(s)	16, 78, 181, 194, 211, 222, 355, 432
AclWI	GGATC	2 cut(s)	20, 33
AcoI	YGGCCR	1 cut(s)	195
AfaI	GTAC	1 cut(s)	369
AfiI	CCNNNNNNNGG	6 cut(s)	22, 124, 210, 382, 383, 438
AgeI	ACCGGT	1 cut(s)	421
AhlI	ACTAGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	6 cut(s)	83, 112, 173, 233, 333, 405
AluI	AGCT	6 cut(s)	83, 112, 173, 233, 333, 405
Alw26I	GTCTC	2 cut(s)	147, 366
AlwI	GGATC	2 cut(s)	20, 33
Ama87I	CYCGRG	2 cut(s)	252, 334
AoxI	GGCC	6 cut(s)	127, 153, 195, 200, 318, 440
ApaI	GGGCCC	2 cut(s)	157, 204
ApeKI	GCWGC	1 cut(s)	233
AsiGI	ACCGGT	1 cut(s)	421
AspS9I	GGNCC	6 cut(s)	127, 153, 154, 200, 201, 440
AsuC2I	CCSGG	1 cut(s)	199
AsuNHI	GCTAGC	1 cut(s)	169
AvaI	CYCGRG	2 cut(s)	252, 334
BaeGI	GKGCMC	2 cut(s)	157, 204
BamHI	GGATCC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	157, 204
BbvI	GCAGC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	2 cut(s)	249, 283
BciT130I	CCWGG	1 cut(s)	278
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	147, 366
BcuI	ACTAGT	1 cut(s)	160
BfaI	CTAG	3 cut(s)	161, 170, 174
BfmI	CTRYAG	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	195, 234
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	2 cut(s)	196, 235
Bme1390I	CCNGG	2 cut(s)	199, 278
BmeT110I	CYCGRG	2 cut(s)	252, 334
BmgT120I	GGNCC	6 cut(s)	127, 153, 154, 200, 201, 440
BmiI	GGNNCC	8 cut(s)	27, 128, 155, 156, 202, 344, 374, 441
BmrFI	CCNGG	2 cut(s)	199, 278
BmsI	GCATC	3 cut(s)	97, 224, 342
BmtI	GCTAGC	1 cut(s)	173
BpmI	CTGGAG	2 cut(s)	129, 421
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	199
BsaAI	YACGTR	1 cut(s)	367
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	6 cut(s)	22, 124, 210, 382, 383, 438
Bse118I	RCCGGY	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	6 cut(s)	22, 124, 210, 382, 383, 438
BseMII	CTCAG	2 cut(s)	75, 369
BseNI	ACTGG	1 cut(s)	404
BseSI	GKGCMC	2 cut(s)	157, 204
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	101
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	6 cut(s)	129, 155, 197, 202, 320, 442
BshTI	ACCGGT	1 cut(s)	421
BsiEI	CGRYCG	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	252, 334
BsiSI	CCGG	3 cut(s)	166, 198, 422
BsiWI	CGTACG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	351
BslI	CCNNNNNNNGG	6 cut(s)	22, 124, 210, 382, 383, 438
BsmAI	GTCTC	2 cut(s)	147, 366
BsmFI	GGGAC	1 cut(s)	351
BsnI	GGCC	6 cut(s)	129, 155, 197, 202, 320, 442
BsoBI	CYCGRG	2 cut(s)	252, 334
Bsp120I	GGGCCC	2 cut(s)	153, 200
Bsp1286I	GDGCHC	2 cut(s)	157, 204
Bsp143I	GATC	2 cut(s)	3, 25
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	8 cut(s)	16, 78, 181, 194, 211, 222, 355, 432
BspANI	GGCC	6 cut(s)	129, 155, 197, 202, 320, 442
BspCNI	CTCAG	2 cut(s)	76, 370
BspLI	GGNNCC	8 cut(s)	27, 128, 155, 156, 202, 344, 374, 441
BspMAI	CTGCAG	1 cut(s)	125
BspOI	GCTAGC	1 cut(s)	173
BspPI	GGATC	2 cut(s)	20, 33
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	1 cut(s)	421
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	421
BssMI	GATC	2 cut(s)	3, 25
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	372
BstBAI	YACGTR	1 cut(s)	367
BstC8I	GCNNGC	5 cut(s)	20, 59, 171, 213, 231
BstDEI	CTNAG	2 cut(s)	84, 378
BstKTI	GATC	2 cut(s)	6, 28
BstMAI	GTCTC	2 cut(s)	147, 366
BstMBI	GATC	2 cut(s)	3, 25
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	4 cut(s)	208, 221, 230, 242
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	22, 294
BstSCI	CCNGG	2 cut(s)	197, 276
BstSFI	CTRYAG	1 cut(s)	121
BstSLI	GKGCMC	2 cut(s)	157, 204
BstV1I	GCAGC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	6 cut(s)	129, 155, 197, 202, 320, 442
Cac8I	GCNNGC	5 cut(s)	20, 59, 171, 213, 231
Cfr10I	RCCGGY	1 cut(s)	421
Cfr13I	GGNCC	6 cut(s)	127, 153, 154, 200, 201, 440
Csp6I	GTAC	1 cut(s)	368
CspAI	ACCGGT	1 cut(s)	421
CviAII	CATG	2 cut(s)	19, 291
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	2 cut(s)	84, 378
DpnI	GATC	2 cut(s)	5, 27
DpnII	GATC	2 cut(s)	3, 25
EaeI	YGGCCR	1 cut(s)	195
EagI	CGGCCG	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	157, 204
Eco52I	CGGCCG	1 cut(s)	195
Eco88I	CYCGRG	2 cut(s)	252, 334
EcoO109I	RGGNCCY	4 cut(s)	127, 153, 154, 201
EcoRII	CCWGG	1 cut(s)	276
EcoT22I	ATGCAT	1 cut(s)	296
EcoT38I	GRGCYC	2 cut(s)	157, 204
FaeI	CATG	2 cut(s)	22, 294
FaiI	YATR	9 cut(s)	20, 42, 71, 138, 140, 292, 296, 350, 466
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	2 cut(s)	18, 290
FauI	CCCGC	2 cut(s)	204, 229
FauNDI	CATATG	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	195, 234
FriOI	GRGCYC	2 cut(s)	157, 204
Fsp4HI	GCNGC	2 cut(s)	195, 234
FspBI	CTAG	3 cut(s)	161, 170, 174
GluI	GCNGC	2 cut(s)	195, 234
GsaI	CCCAGC	1 cut(s)	105
GsuI	CTGGAG	2 cut(s)	129, 421
HaeIII	GGCC	6 cut(s)	129, 155, 197, 202, 320, 442
HapII	CCGG	3 cut(s)	166, 198, 422
Hin1II	CATG	2 cut(s)	22, 294
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	2 cut(s)	266, 273
HpaII	CCGG	3 cut(s)	166, 198, 422
Hpy188III	TCNNGA	4 cut(s)	50, 146, 270, 336
Hpy99I	CGWCG	2 cut(s)	326, 329
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	372
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	123, 136, 236, 294
HpyF10VI	GCNNNNNNNGC	4 cut(s)	208, 221, 230, 242
HpyF3I	CTNAG	2 cut(s)	84, 378
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	22, 294
Kzo9I	GATC	2 cut(s)	3, 25
LmnI	GCTCC	3 cut(s)	80, 342, 402
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	3 cut(s)	97, 224, 342
MaeI	CTAG	3 cut(s)	161, 170, 174
MaeII	ACGT	1 cut(s)	366
MalI	GATC	2 cut(s)	5, 27
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	2 cut(s)	3, 25
MboII	GAAGA	2 cut(s)	38, 83
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	157, 204
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	296
MseI	TTAA	1 cut(s)	426
MspI	CCGG	3 cut(s)	166, 198, 422
MspR9I	CCNGG	2 cut(s)	199, 278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	4 cut(s)	208, 221, 230, 242
NciI	CCSGG	1 cut(s)	199
NdeI	CATATG	1 cut(s)	138
NdeII	GATC	2 cut(s)	3, 25
NheI	GCTAGC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	22, 294
NlaIV	GGNNCC	8 cut(s)	27, 128, 155, 156, 202, 344, 374, 441
NsiI	ATGCAT	1 cut(s)	296
NspI	RCATGY	2 cut(s)	22, 294
PaeI	GCATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	266
Pfl23II	CGTACG	1 cut(s)	367
PinAI	ACCGGT	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	196, 235
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
Ppu21I	YACGTR	1 cut(s)	367
Psp6I	CCWGG	1 cut(s)	276
PspFI	CCCAGC	1 cut(s)	101
PspGI	CCWGG	1 cut(s)	276
PspLI	CGTACG	1 cut(s)	367
PspN4I	GGNNCC	8 cut(s)	27, 128, 155, 156, 202, 344, 374, 441
PspOMI	GGGCCC	2 cut(s)	153, 200
PspPI	GGNCC	6 cut(s)	127, 153, 154, 200, 201, 440
PstI	CTGCAG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	2 cut(s)	195, 234
Sau3AI	GATC	2 cut(s)	3, 25
Sau96I	GGNCC	6 cut(s)	127, 153, 154, 200, 201, 440
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	199, 278
SduI	GDGCHC	2 cut(s)	157, 204
SetI	ASST	8 cut(s)	85, 114, 175, 235, 335, 369, 398, 407
SfaNI	GCATC	3 cut(s)	97, 224, 342
SfcI	CTRYAG	1 cut(s)	121
SpeI	ACTAGT	1 cut(s)	160
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	8 cut(s)	16, 78, 181, 194, 211, 222, 355, 432
SspMI	CTAG	3 cut(s)	161, 170, 174
StyD4I	CCNGG	2 cut(s)	197, 276
TaaI	ACNGT	1 cut(s)	372
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	2 cut(s)	269, 408
TasI	AATT	1 cut(s)	427
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TseI	GCWGC	1 cut(s)	233
TspGWI	ACGGA	2 cut(s)	342, 355
XceI	RCATGY	2 cut(s)	22, 294
XspI	CTAG	3 cut(s)	161, 170, 174
Zsp2I	ATGCAT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.