Rh3DG250700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015226
Physical Location & Seq
Forward (+)
24682523 .. 24682849
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG250700.1

Sequence Viewer

Length: 327 bp
ATGTGGGGAACTACACCAGGAGACCCTAGTTCAGTTATTACTGTACATCTTTTGACCAGGTATGCCTATATACTTCGTCAGTATTTCAATTCAGTAAGAAAAAAGAAAAAGGAAATTAAGAAACAAAAAGAGATGGTTTTATCAGTAGCACACTGGTTGCTTTGTTCGCTACCACCCGAGAGGCGGCCGAGAAGCAGAAGATTAGAGAGTCAGGCTGAAAATTCATGTATACATAGTGGTCTAATGACAAATGCCGATGATGGCGGAAGCTCGGAAAGTAGCCGTATGATGAGGAAGGCGGGGCTGGTATGGTGTTTTTGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.5

Weight (kDa)

9.95

Isoelectric Point (pI)

58.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 229
AciI CCGC 3 cut(s) 184, 264, 299
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 220
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 183
AgsI TTSAA 1 cut(s) 88
AjnI CCWGG 2 cut(s) 16, 56
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 176
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 220
AvaI CYCGRG 1 cut(s) 176
BccI CCATC 2 cut(s) 127, 254
BceAI ACGGC 1 cut(s) 267
BciT130I CCWGG 2 cut(s) 18, 58
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 27
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 2 cut(s) 18, 58
BmeT110I CYCGRG 1 cut(s) 176
BmrFI CCNGG 2 cut(s) 18, 58
BsaI GGTCTC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 18, 58
BseLI CCNNNNNNNGG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 185
Bsh1285I CGRYCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 15
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 43
BspACI CCGC 3 cut(s) 184, 264, 299
BspANI GGCC 1 cut(s) 187
BspTNI GGTCTC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 43
BsrI ACTGG 1 cut(s) 158
BssNAI GTATAC 1 cut(s) 230
Bst1107I GTATAC 1 cut(s) 230
Bst2UI CCWGG 2 cut(s) 18, 58
Bst4CI ACNGT 1 cut(s) 43
BstAUI TGTACA 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 15
BstMCI CGRYCG 1 cut(s) 188
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 18, 58
BstSCI CCNGG 2 cut(s) 16, 56
BstZ17I GTATAC 1 cut(s) 230
BstZI CGGCCG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 151
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 225
CviJI RGCY 5 cut(s) 187, 215, 270, 282, 304
CviKI_1 RGCY 5 cut(s) 187, 215, 270, 282, 304
CviQI GTAC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 185
EagI CGGCCG 1 cut(s) 185
EciI GGCGGA 1 cut(s) 279
EclXI CGGCCG 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 15
Eco52I CGGCCG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 16, 56
FaeI CATG 1 cut(s) 228
FaiI YATR 8 cut(s) 63, 69, 71, 226, 230, 234, 287, 310
FatI CATG 1 cut(s) 224
FauI CCCGC 1 cut(s) 292
FblI GTMKAC 1 cut(s) 229
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 185
HaeIII GGCC 1 cut(s) 187
Hin1II CATG 1 cut(s) 228
HinfI GANTC 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 274
Hpy8I GTNNAC 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 43
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
Hsp92II CATG 1 cut(s) 228
LpnPI CCDG 7 cut(s) 3, 30, 43, 70, 139, 197, 290
MabI ACCWGGT 1 cut(s) 56
MaeI CTAG 1 cut(s) 27
MboII GAAGA 1 cut(s) 210
MluCI AATT 3 cut(s) 88, 114, 220
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 2 cut(s) 174, 285
MseI TTAA 2 cut(s) 117, 325
MspR9I CCNGG 2 cut(s) 18, 58
MvaI CCWGG 2 cut(s) 18, 58
MwoI GCNNNNNNNGC 1 cut(s) 166
NlaIII CATG 1 cut(s) 228
NmeAIII GCCGAG 1 cut(s) 213
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 16, 56
PspGI CCWGG 2 cut(s) 16, 56
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 117, 325
SatI GCNGC 1 cut(s) 185
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 18, 58
SetI ASST 2 cut(s) 62, 272
SexAI ACCWGGT 1 cut(s) 56
Sse9I AATT 3 cut(s) 88, 114, 220
SsiI CCGC 3 cut(s) 184, 264, 299
SspMI CTAG 1 cut(s) 27
StyD4I CCNGG 2 cut(s) 16, 56
TaaI ACNGT 1 cut(s) 43
TasI AATT 3 cut(s) 88, 114, 220
TatI WGTACW 1 cut(s) 43
TauI GCSGC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 117, 325
Tru9I TTAA 2 cut(s) 117, 325
TscAI CASTG 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 1 cut(s) 158
XapI RAATTY 1 cut(s) 220
XmiI GTMKAC 1 cut(s) 229
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.