Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012401

Orthogroup ID

OG0015226

Physical Location & Seq

Genomic Coordinates Reverse (-)

109040 .. 109567

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12401g00220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTAGAACATTTCTGTGAATGCTATTCTGATCTAAGTGGTCTTATTCTATGTCCCGTGCTAGGAAGCATTACTCCTCTTTTCATTCCAAATTCAAGAATACGACCGATACGATTAATTGGTCTGTGTGCCTCTCTTATTACTTTTTTGTATCCCCCTGTTCCTCGGATACAATTTGATCCTTCTACGGCCAAATCTCAATTTGTGGAAAGCCTTCGATGGCTTCCTTATGAAAACATCAATTTTTATTTGGGTATAGACGGTATCTCTTTATTCTTCGTGATATTGACCACATTTCTGATCCCTATTTGCATTTCAGTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATCTCTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTGGATCCTTTACTATTCTATGTTCTTCCCGAAAGCGTGCTAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATAAAGCTTTTCCTCTGCAGGGGCCTTGTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

176

Amino Acids

19.83

Weight (kDa)

6.7

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00580
pyrus_communis	pycom10g06610 pycom12401g00210 pycom12401g00220
rosa_chinensis	RchiOBHm_MTg0498651 RchiOBHm_MTg0498681 RchiOBHm_MTg0498711
rosa_laevigata	RLG00000000440 RLG00000000443 RLG00000000468
rosa_samantha	Rh2DG505800 Rh3AG226300 Rh3BG259100 Rh3DG250700 Rh4AG240500 Rh4BG243600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	403, 465
AclWI	GGATC	4 cut(s)	173, 295, 407, 420
AcoI	YGGCCR	1 cut(s)	189
AcsI	RAATTY	2 cut(s)	91, 380
AfiI	CCNNNNNNNGG	3 cut(s)	62, 409, 511
AgsI	TTSAA	1 cut(s)	96
AluBI	AGCT	2 cut(s)	470, 499
AluI	AGCT	2 cut(s)	470, 499
AlwI	GGATC	4 cut(s)	173, 295, 407, 420
AoxI	GGCC	2 cut(s)	189, 514
ApoI	RAATTY	2 cut(s)	91, 380
AseI	ATTAAT	1 cut(s)	116
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	514
BamHI	GGATCC	1 cut(s)	412
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	2 cut(s)	204, 380
BciVI	GTATCC	2 cut(s)	162, 162
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	1 cut(s)	508
BfuI	GTATCC	2 cut(s)	162, 162
BlpI	GCTNAGC	1 cut(s)	471
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	414, 515
BmsI	GCATC	2 cut(s)	374, 484
Bpu1102I	GCTNAGC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 409, 511
BseDI	CCNNGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	62, 409, 511
BseMII	CTCAG	1 cut(s)	462
BseRI	GAGGAG	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	488
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	191, 516
BsiEI	CGRYCG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	62, 409, 511
BsmFI	GGGAC	1 cut(s)	39
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	191, 516
Bsp143I	GATC	5 cut(s)	31, 178, 300, 390, 412
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	2 cut(s)	403, 465
BspANI	GGCC	2 cut(s)	191, 516
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	414, 515
BspMAI	CTGCAG	1 cut(s)	512
BspPI	GGATC	4 cut(s)	173, 295, 407, 420
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	5 cut(s)	31, 178, 300, 390, 412
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	407, 446
BstDEI	CTNAG	2 cut(s)	35, 471
BstKTI	GATC	5 cut(s)	34, 181, 303, 393, 415
BstMBI	GATC	5 cut(s)	31, 178, 300, 390, 412
BstMCI	CGRYCG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	409
BstSFI	CTRYAG	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BsuI	GTATCC	2 cut(s)	162, 162
BsuRI	GGCC	2 cut(s)	191, 516
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	407, 446
Cfr13I	GGNCC	1 cut(s)	514
CviAII	CATG	1 cut(s)	406
CviJI	RGCY	6 cut(s)	191, 213, 223, 470, 499, 516
CviKI_1	RGCY	6 cut(s)	191, 213, 223, 470, 499, 516
DdeI	CTNAG	2 cut(s)	35, 471
DpnI	GATC	5 cut(s)	33, 180, 302, 392, 414
DpnII	GATC	5 cut(s)	31, 178, 300, 390, 412
EaeI	YGGCCR	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	514
FaeI	CATG	1 cut(s)	409
FaiI	YATR	9 cut(s)	52, 231, 257, 335, 345, 357, 407, 429, 458
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	1 cut(s)	405
FspBI	CTAG	1 cut(s)	62
GsaI	CCCAGC	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	191, 516
Hin1II	CATG	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	497
Hpy188I	TCNGA	3 cut(s)	31, 168, 300
Hpy188III	TCNNGA	4 cut(s)	96, 280, 377, 437
HpyAV	CCTTC	2 cut(s)	192, 224
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	3 cut(s)	312, 510, 523
HpyF3I	CTNAG	2 cut(s)	35, 471
Hsp92II	CATG	1 cut(s)	409
Kzo9I	GATC	5 cut(s)	31, 178, 300, 390, 412
LmnI	GCTCC	1 cut(s)	467
LpnPI	CCDG	5 cut(s)	171, 315, 395, 474, 496
LweI	GCATC	2 cut(s)	374, 484
MaeI	CTAG	1 cut(s)	62
MalI	GATC	5 cut(s)	33, 180, 302, 392, 414
MboI	GATC	5 cut(s)	31, 178, 300, 390, 412
MboII	GAAGA	3 cut(s)	268, 425, 470
MflI	RGATCY	1 cut(s)	412
MluCI	AATT	7 cut(s)	91, 117, 173, 200, 241, 372, 380
MnlI	CCTC	4 cut(s)	87, 142, 174, 515
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	15, 317
Mva1269I	GAATGC	1 cut(s)	26
NdeII	GATC	5 cut(s)	31, 178, 300, 390, 412
NlaIII	CATG	1 cut(s)	409
NlaIV	GGNNCC	2 cut(s)	414, 515
NspI	RCATGY	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PctI	GAATGC	1 cut(s)	26
PdmI	GAANNNNTTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	414, 515
PspPI	GGNCC	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	512
PsuI	RGATCY	1 cut(s)	412
RseI	CAYNNNNRTG	2 cut(s)	15, 317
SaqAI	TTAA	1 cut(s)	116
Sau3AI	GATC	5 cut(s)	31, 178, 300, 390, 412
Sau96I	GGNCC	1 cut(s)	514
SetI	ASST	2 cut(s)	472, 501
SfaNI	GCATC	2 cut(s)	374, 484
SfcI	CTRYAG	1 cut(s)	508
SmiMI	CAYNNNNRTG	2 cut(s)	15, 317
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	7 cut(s)	91, 117, 173, 200, 241, 372, 380
SsiI	CCGC	2 cut(s)	403, 465
SspMI	CTAG	1 cut(s)	62
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	217
TaqII	GACCGA	1 cut(s)	121
TasI	AATT	7 cut(s)	91, 117, 173, 200, 241, 372, 380
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	73, 246
TspRI	CASTG	1 cut(s)	324
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	2 cut(s)	91, 380
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.