Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

308671 .. 311760

Gene Structure 3090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2784 bp

ATGCCCTTTTCTACCTGCCCACAATTTGGGAAGCACCCATTTCTTCCATTTCACAAAGTTGATGATCAAAGTTTGGAGCTTTTCCTTCTTCTCCTCTATTCTGGGTTAGTACTTCGCTTCACTTTCATGGGCTCACTGCAATTCCCCATTTCTTTGGAGACTTTAGATTCTTCCAAAAAGTTCAATTCTTTTTGCTACAGTAGAGCTTCTCTTGTTGTTAATTCTTTGAACAGGGTTAATGCTATTAAGGTCAACCGGTTCCAGTCTGAGTTGAATGTGGCTGAGAGTTTAAATGAGCAAAACCCAGATTGCTCAAGACATGAAATTGGGAAGGGGATTAGTGGCACAAAGAGATTGAGTAAGAGAGAAGTGGGTTTGAGGTCTAGTTCAAGAAAGAGTAAGTGGGTTAGGAAATTGGAGAATGTGTTTGTGAATGATGGTGAATTTGATGTTGATTACTCTGTTATCAAGTCTGACATGAGCTTAGAGCATTGTAATGATATTTTGAAAAGGCTAGAGAGGTCTAGTGATTTCAAGACTCTCAAGTTTTTTGAGTGGATGAGAATCAATGGGAAACTCAAAGGCAATGTTAGTGCTTTTAACTCGGTTTTCCGTGTGTTGGGTAGGAGAGAAAATTGGGATGCAGCTGAGAATTTGATTCAGGAAATGGTTACTGAATTTGGGTGTGAACTGAATTATCAGGTCTTCAATACCCTTATTTATGCATGTAGTAAGTTGGGGCGTGTGGAGTTAGGAGCTAAGTGGTTTGCAATGATGCTCGAATATGGAGTCCAGCCTAATGTTGCGACATTTGGTATGCTGATGGCGTTGTACCAGAAGGGCTGGAATGTTGAGGAAGCGGAGTTCACTTTTTCTCGAATGAGGAACTTTGGGATTGTTTGTCAATCTGCATACTCGGCAATGATCACAATTTATACTCGTATGAGTCTGTATGAGAGAGCAGAAGAGATCATTGGCTTAATGAAAGAAGATGGAGTGATACCGAATTTGGATAACTGGTTGGTAGTGATTAATGCTTATTGTCAGCAGGGAAAAGTGGAAGCTGCTGAACTAGGAGTAGTCTCCATGAAAGAAGCAGGGTTTTCTCCAAACATAGTTGCGTATAATACATTGATAACCGGATATGGGAAGGCATCTAAAATGGACGCTGCTCATCACCTATTTCTAGGCATTAAGAAAGTCGGATTAGAGCCTGATGAAACAACTTACCGTTCCATGATTGAAGGTTGGGGTAGAACTGACAATTATAAGGAAGCATATTGGTACTACAAAGAGCTCAAACGTTTGGGATACAAGCCTAATTCGTCTAACCTTTACACATTAATAAACCTGCAAGCCAAGCATGAGGATGAAGATGGGGCCATCAGAACTCTCGATGATATGCAGAAGATAGGATGCCAATATTCATCAATCCTTGGTATTCTTCTGCAAGCATATGAGAAGGCTGGAAGGATTGATAAAGTGCCTTTCCTTTTGAGAGGTGCTTTATATCAACATGTTCTTGTCAGCCGGACTTCTTGTTCGAGTCTTGTCATGTCTTATGTGAAGCACGGCTTGGTGGATGATACTATGGAAGTGTTGAGGGAAAAGCAGTGGAAGGATCCACATTTTGAAGATAATTTGTACCATTTGTTAATTTGCTCATGTAAAGAGTTGGGTCATCTTGAGAATGCTGTGACAATATACAATCAAATGCCCAAACATGATGGCAAGCCAAACATGCACATCATGTGCACAATGATTGACATTTACAGCATCATGGATCTCTTCTCTGAAGCGAAGAAAGTTTATCTTGAGTTGGAATCCTCAGGAATCGTCTTGGACATGATTGCTTATGGTATTGCTGTAAGAATGTATGTCAAAGCTGGTTCTTTGGAAGATGCCTGCTCTGTTCTGGACTTGATGGAAAAACAGGAGGGCCTAATTCCAGACATCTATATGCTTCGTGATATGTTCCGTATTTATCAAAAATGCGGCAGACTTGATAAGTTGAAAGAACTGTACTATCGAATCTTGAAGACCAGAGTGACTTGGGATCAGGAAATGTACAACTGTGTCATAAACTGCTGTTCTCGCGCTTTGCCAATTGATGAGATCTCAGAGATGTTTGATCAGATGCTTAAACGTGGGTTTGTACCTAATACCATAACCTTCAATGTCATGCTTGATGTATATGGGAAAGCAAAGCTCTTAAAGAAGGCTAGGAAGTTGTTCTTGATGGCCCAGAAATGGGATCTGGTAGATACAATCTCTTACAATACTATTATAGCTGCGTATGGGAGAAACAAAGACTTCAAGAGCATGTCTTCAGCAGTACGAGAGATGCAGTTAAATGGATTTTCAGTTTCCCTTGAAGCCTACAATAGTATGCTGGATGCTTATGGGAAAGAAAACCAAATGGAGCAGTTTAGAAGCGTTTTGCAAAGAATGAAGGAGACAAGCTGCGGTTCGGACCATCACACCTACAACACTATGATCAATATCTATGGAGAGCAAGGATGGATAGATGAAGTTGCTGGGGTGCTGACTGAGTTGAAAGAATGTGGACTGGGACCTGATCTGTGCAGCTATAACACATTGATCAAGGCATATGGAATTGCAGGAATGGTTGAAGATGCTGTCTATTTGCTCAAGGAAATGAGAGAAAATGGTGTAGAGCCCGATAAGATTACATACATCAATCTGATTGCTGCATTACGAAAAAATGATGAATATTTGGAGGCGGTAAAGTGGTCCTTGTGGATGAAGCAGATGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

928

Amino Acids

106.42

Weight (kDa)

6.51

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	235 - 275	8.2e-07	PPR repeat family
PPR_2	PF13041	342 - 381	1.4e-07	PPR repeat family
PPR_3	PF13812	363 - 415	1e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	370 - 416	4.5e-13	PPR repeat family
PPR_2	PF13041	689 - 732	9.5e-10	PPR repeat family
PPR_3	PF13812	779 - 838	1.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	793 - 834	2.4e-09	PPR repeat family
PPR_3	PF13812	848 - 905	1.9e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	856 - 888	5e-08	PPR repeat
PPR_2	PF13041	859 - 906	8e-13	PPR repeat family
PPR	PF01535	863 - 892	3.6e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1269
Acc36I	ACCTGC	2 cut(s)	23, 1359
AccB7I	CCANNNNNTGG	1 cut(s)	26
AccII	CGCG	1 cut(s)	2097
AciI	CCGC	4 cut(s)	860, 1995, 2466, 2744
AclI	AACGTT	1 cut(s)	1303
AclWI	GGATC	5 cut(s)	1616, 1629, 1791, 2064, 2262
AcsI	RAATTY	4 cut(s)	443, 652, 677, 1006
AcuI	CTGAAG	2 cut(s)	1815, 2313
AfaI	GTAC	8 cut(s)	111, 833, 1286, 1646, 2024, 2069, 2157, 2337
AfiI	CCNNNNNNNGG	5 cut(s)	26, 619, 1146, 2250, 2251
AflIII	ACRYGT	1 cut(s)	1516
AgeI	ACCGGT	1 cut(s)	255
AjuI	GAANNNNNNNTTGG	4 cut(s)	957, 989, 1559, 1591
AloI	GAACNNNNNNTCC	4 cut(s)	848, 880, 1525, 1557
Alw21I	GWGCWC	2 cut(s)	1299, 1757
Alw26I	GTCTC	3 cut(s)	152, 1087, 2450
Alw44I	GTGCAC	1 cut(s)	1753
AlwI	GGATC	5 cut(s)	1616, 1629, 1791, 2064, 2262
AoxI	GGCC	3 cut(s)	1380, 1939, 2241
ApaLI	GTGCAC	1 cut(s)	1753
ApeKI	GCWGC	7 cut(s)	644, 1064, 1169, 2291, 2463, 2586, 2711
ApoI	RAATTY	4 cut(s)	443, 652, 677, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	774, 806, 1525, 1557
AseI	ATTAAT	2 cut(s)	1032, 1343
AsiGI	ACCGGT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	2231
AspLEI	GCGC	1 cut(s)	2099
AspS9I	GGNCC	6 cut(s)	1380, 1939, 2242, 2473, 2573, 2754
AsuHPI	GGTGA	2 cut(s)	452, 1169
AvaII	GGWCC	3 cut(s)	2473, 2573, 2754
AxyI	CCTNAGG	1 cut(s)	1828
BaeGI	GKGCMC	1 cut(s)	1757
BamHI	GGATCC	1 cut(s)	1621
BanII	GRGCYC	3 cut(s)	134, 1299, 2682
BbsI	GAAGAC	3 cut(s)	697, 2045, 2319
Bbv12I	GWGCWC	2 cut(s)	1299, 1757
BbvI	GCAGC	7 cut(s)	656, 1051, 1156, 2278, 2450, 2598, 2698
BceAI	ACGGC	1 cut(s)	1588
BciVI	GTATCC	1 cut(s)	1304
BclI	TGATCA	5 cut(s)	64, 924, 2131, 2496, 2601
BcoDI	GTCTC	3 cut(s)	152, 1087, 2450
BfaI	CTAG	6 cut(s)	384, 515, 525, 1073, 1187, 2223
BfmI	CTRYAG	1 cut(s)	196
BfuAI	ACCTGC	2 cut(s)	23, 1359
BfuI	GTATCC	1 cut(s)	1304
BglII	AGATCT	1 cut(s)	2115
BisI	GCNGC	8 cut(s)	645, 1065, 1170, 1996, 2292, 2464, 2587, 2712
BlsI	GCNGC	8 cut(s)	646, 1066, 1171, 1997, 2293, 2465, 2588, 2713
BmcAI	AGTACT	1 cut(s)	111
Bme18I	GGWCC	3 cut(s)	2473, 2573, 2754
BmgT120I	GGNCC	6 cut(s)	1380, 1939, 2242, 2473, 2573, 2754
BmiI	GGNNCC	4 cut(s)	260, 1381, 1623, 2574
BmrI	ACTGGG	1 cut(s)	2579
BmuI	ACTGGG	1 cut(s)	2579
BpiI	GAAGAC	3 cut(s)	697, 2045, 2319
BpuEI	CTTGAG	5 cut(s)	298, 527, 1706, 1835, 2636
BsaBI	GATNNNNATC	2 cut(s)	563, 2501
BsaJI	CCNNGG	1 cut(s)	1435
BsaWI	WCCGGW	2 cut(s)	255, 1139
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 619, 1146, 2250, 2251
Bse118I	RCCGGY	1 cut(s)	255
Bse1I	ACTGG	3 cut(s)	262, 1022, 2574
Bse21I	CCTNAGG	1 cut(s)	1828
Bse3DI	GCAATG	3 cut(s)	592, 777, 927
Bse8I	GATNNNNATC	2 cut(s)	563, 2501
BseDI	CCNNGG	1 cut(s)	1435
BseGI	GGATG	8 cut(s)	564, 646, 1375, 1421, 1588, 2401, 2525, 2769
BseJI	GATNNNNATC	2 cut(s)	563, 2501
BseLI	CCNNNNNNNGG	5 cut(s)	26, 619, 1146, 2250, 2251
BseMI	GCAATG	3 cut(s)	592, 777, 927
BseMII	CTCAG	6 cut(s)	258, 273, 639, 1842, 2133, 2541
BseNI	ACTGG	3 cut(s)	262, 1022, 2574
BseRI	GAGGAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	1757
BseXI	GCAGC	7 cut(s)	656, 1051, 1156, 2278, 2450, 2598, 2698
BseYI	CCCAGC	1 cut(s)	2537
BsgI	GTGCAG	1 cut(s)	2605
Bsh1236I	CGCG	1 cut(s)	2097
BshFI	GGCC	3 cut(s)	1382, 1941, 2243
BshTI	ACCGGT	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	1299, 1757
BsiSI	CCGG	3 cut(s)	256, 1140, 1531
BslFI	GGGAC	1 cut(s)	2586
BslI	CCNNNNNNNGG	5 cut(s)	26, 619, 1146, 2250, 2251
BsmAI	GTCTC	3 cut(s)	152, 1087, 2450
BsmFI	GGGAC	1 cut(s)	2586
BsmI	GAATGC	1 cut(s)	1696
BsnI	GGCC	3 cut(s)	1382, 1941, 2243
Bsp1286I	GDGCHC	4 cut(s)	134, 1299, 1757, 2682
Bsp1407I	TGTACA	1 cut(s)	2067
BspACI	CCGC	4 cut(s)	860, 1995, 2466, 2744
BspANI	GGCC	3 cut(s)	1382, 1941, 2243
BspCNI	CTCAG	6 cut(s)	259, 274, 640, 1841, 2132, 2542
BspFNI	CGCG	1 cut(s)	2097
BspLI	GGNNCC	4 cut(s)	260, 1381, 1623, 2574
BspMI	ACCTGC	2 cut(s)	23, 1359
BspPI	GGATC	5 cut(s)	1616, 1629, 1791, 2064, 2262
BsrDI	GCAATG	3 cut(s)	592, 777, 927
BsrFI	RCCGGY	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	2067
BsrI	ACTGG	3 cut(s)	262, 1022, 2574
BssAI	RCCGGY	1 cut(s)	255
BssECI	CCNNGG	1 cut(s)	1435
BssT1I	CCWWGG	1 cut(s)	1435
Bst4CI	ACNGT	4 cut(s)	200, 1232, 2022, 2075
Bst6I	CTCTTC	2 cut(s)	960, 1793
BstAUI	TGTACA	1 cut(s)	2067
BstC8I	GCNNGC	4 cut(s)	1356, 1452, 1733, 1906
BstDEI	CTNAG	8 cut(s)	267, 282, 484, 648, 759, 1828, 2119, 2550
BstF5I	GGATG	8 cut(s)	564, 646, 1375, 1421, 1588, 2401, 2525, 2769
BstFNI	CGCG	1 cut(s)	2097
BstHHI	GCGC	1 cut(s)	2099
BstMAI	GTCTC	3 cut(s)	152, 1087, 2450
BstMWI	GCNNNNNNNGC	4 cut(s)	917, 1360, 1741, 2094
BstNSI	RCATGY	4 cut(s)	729, 1520, 1744, 2326
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	1757
BstUI	CGCG	1 cut(s)	2097
BstV1I	GCAGC	7 cut(s)	656, 1051, 1156, 2278, 2450, 2598, 2698
BstV2I	GAAGAC	3 cut(s)	697, 2045, 2319
BstX2I	RGATCY	4 cut(s)	1621, 1783, 2115, 2254
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	4 cut(s)	1621, 1783, 2115, 2254
Bsu36I	CCTNAGG	1 cut(s)	1828
BsuI	GTATCC	1 cut(s)	1304
BsuRI	GGCC	3 cut(s)	1382, 1941, 2243
BtsCI	GGATG	8 cut(s)	564, 646, 1375, 1421, 1588, 2401, 2525, 2769
BtsI	GCAGTG	2 cut(s)	134, 1619
BtsIMutI	CAGTG	2 cut(s)	134, 1619
BveI	ACCTGC	2 cut(s)	23, 1359
Cac8I	GCNNGC	4 cut(s)	1356, 1452, 1733, 1906
CfoI	GCGC	1 cut(s)	2099
Cfr10I	RCCGGY	1 cut(s)	255
Cfr13I	GGNCC	6 cut(s)	1380, 1939, 2242, 2473, 2573, 2754
CseI	GACGC	1 cut(s)	1175
Csp6I	GTAC	8 cut(s)	110, 832, 1285, 1645, 2023, 2068, 2156, 2336
CspAI	ACCGGT	1 cut(s)	255
CviQI	GTAC	8 cut(s)	110, 832, 1285, 1645, 2023, 2068, 2156, 2336
DdeI	CTNAG	8 cut(s)	267, 282, 484, 648, 759, 1828, 2119, 2550
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	960, 1793
EarI	CTCTTC	2 cut(s)	960, 1793
Ecl136II	GAGCTC	1 cut(s)	1297
Eco130I	CCWWGG	1 cut(s)	1435
Eco24I	GRGCYC	3 cut(s)	134, 1299, 2682
Eco47I	GGWCC	3 cut(s)	2473, 2573, 2754
Eco53kI	GAGCTC	1 cut(s)	1297
Eco57I	CTGAAG	2 cut(s)	1815, 2313
Eco81I	CCTNAGG	1 cut(s)	1828
EcoICRI	GAGCTC	1 cut(s)	1297
EcoO109I	RGGNCCY	2 cut(s)	1939, 2573
EcoT14I	CCWWGG	1 cut(s)	1435
EcoT22I	ATGCAT	1 cut(s)	727
EcoT38I	GRGCYC	3 cut(s)	134, 1299, 2682
ErhI	CCWWGG	1 cut(s)	1435
FalI	AAGNNNNNCTT	8 cut(s)	1559, 1591, 1797, 1829, 2219, 2251, 2741, 2773
FaqI	GGGAC	1 cut(s)	2586
FauNDI	CATATG	2 cut(s)	1456, 2611
FbaI	TGATCA	5 cut(s)	64, 924, 2131, 2496, 2601
Fnu4HI	GCNGC	8 cut(s)	645, 1065, 1170, 1996, 2292, 2464, 2587, 2712
FokI	GGATG	8 cut(s)	571, 653, 1382, 1428, 1595, 2408, 2532, 2776
FriOI	GRGCYC	3 cut(s)	134, 1299, 2682
Fsp4HI	GCNGC	8 cut(s)	645, 1065, 1170, 1996, 2292, 2464, 2587, 2712
FspBI	CTAG	6 cut(s)	384, 515, 525, 1073, 1187, 2223
GlaI	GCGC	1 cut(s)	2098
GluI	GCNGC	8 cut(s)	645, 1065, 1170, 1996, 2292, 2464, 2587, 2712
GsaI	CCCAGC	1 cut(s)	2541
HaeIII	GGCC	3 cut(s)	1382, 1941, 2243
HapII	CCGG	3 cut(s)	256, 1140, 1531
HgaI	GACGC	1 cut(s)	1175
HhaI	GCGC	1 cut(s)	2099
Hin6I	GCGC	1 cut(s)	2097
HinP1I	GCGC	1 cut(s)	2097
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	3 cut(s)	256, 1140, 1531
HphI	GGTGA	2 cut(s)	452, 1169
Hpy166II	GTNNAC	5 cut(s)	253, 689, 867, 1755, 2567
Hpy188I	TCNGA	9 cut(s)	268, 475, 1205, 1388, 1795, 2122, 2136, 2473, 2706
Hpy8I	GTNNAC	5 cut(s)	253, 689, 867, 1755, 2567
HpyCH4III	ACNGT	4 cut(s)	200, 1232, 2022, 2075
HpyCH4IV	ACGT	2 cut(s)	1303, 2146
HpyF10VI	GCNNNNNNNGC	4 cut(s)	917, 1360, 1741, 2094
HpyF3I	CTNAG	8 cut(s)	267, 282, 484, 648, 759, 1828, 2119, 2550
HpySE526I	ACGT	2 cut(s)	1303, 2146
HspAI	GCGC	1 cut(s)	2097
Ksp22I	TGATCA	5 cut(s)	64, 924, 2131, 2496, 2601
LmnI	GCTCC	3 cut(s)	76, 755, 2422
Lsp1109I	GCAGC	7 cut(s)	656, 1051, 1156, 2278, 2450, 2598, 2698
MaeI	CTAG	6 cut(s)	384, 515, 525, 1073, 1187, 2223
MaeII	ACGT	2 cut(s)	1303, 2146
MaeIII	GTNAC	3 cut(s)	670, 1696, 2047
MfeI	CAATTG	1 cut(s)	2106
MflI	RGATCY	4 cut(s)	1621, 1783, 2115, 2254
MhlI	GDGCHC	4 cut(s)	134, 1299, 1757, 2682
MlyI	GAGTC	4 cut(s)	532, 798, 955, 1555
MmeI	TCCRAC	2 cut(s)	1183, 1800
Mph1103I	ATGCAT	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	2231
MslI	CAYNNNNRTG	4 cut(s)	125, 495, 1368, 1958
MspA1I	CMGCKG	1 cut(s)	647
MspI	CCGG	3 cut(s)	256, 1140, 1531
MunI	CAATTG	1 cut(s)	2106
Mva1269I	GAATGC	1 cut(s)	1696
MvnI	CGCG	1 cut(s)	2097
MwoI	GCNNNNNNNGC	4 cut(s)	917, 1360, 1741, 2094
NdeI	CATATG	2 cut(s)	1456, 2611
NlaIV	GGNNCC	4 cut(s)	260, 1381, 1623, 2574
NmeAIII	GCCGAG	1 cut(s)	896
NmuCI	GTSAC	2 cut(s)	1696, 2047
NsiI	ATGCAT	1 cut(s)	727
NspI	RCATGY	4 cut(s)	729, 1520, 1744, 2326
PciI	ACATGT	1 cut(s)	1516
PctI	GAATGC	1 cut(s)	1696
PdmI	GAANNNNTTC	1 cut(s)	2231
PfeI	GAWTC	6 cut(s)	167, 564, 658, 1823, 1833, 2031
PflMI	CCANNNNNTGG	1 cut(s)	26
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	8 cut(s)	646, 1066, 1171, 1997, 2293, 2465, 2588, 2713
PleI	GAGTC	4 cut(s)	532, 797, 954, 1554
PpsI	GAGTC	4 cut(s)	532, 797, 954, 1554
PpuMI	RGGWCCY	1 cut(s)	2573
PscI	ACATGT	1 cut(s)	1516
PshBI	ATTAAT	2 cut(s)	1032, 1343
PsiI	TTATAA	1 cut(s)	1269
Psp124BI	GAGCTC	1 cut(s)	1299
Psp1406I	AACGTT	1 cut(s)	1303
Psp5II	RGGWCCY	1 cut(s)	2573
PspFI	CCCAGC	1 cut(s)	2537
PspN4I	GGNNCC	4 cut(s)	260, 1381, 1623, 2574
PspPI	GGNCC	6 cut(s)	1380, 1939, 2242, 2473, 2573, 2754
PspPPI	RGGWCCY	1 cut(s)	2573
PsuI	RGATCY	4 cut(s)	1621, 1783, 2115, 2254
PvuII	CAGCTG	1 cut(s)	647
RsaI	GTAC	8 cut(s)	111, 833, 1286, 1646, 2024, 2069, 2157, 2337
RsaNI	GTAC	8 cut(s)	110, 832, 1285, 1645, 2023, 2068, 2156, 2336
RseI	CAYNNNNRTG	4 cut(s)	125, 495, 1368, 1958
SacI	GAGCTC	1 cut(s)	1299
SatI	GCNGC	8 cut(s)	645, 1065, 1170, 1996, 2292, 2464, 2587, 2712
Sau96I	GGNCC	6 cut(s)	1380, 1939, 2242, 2473, 2573, 2754
ScaI	AGTACT	1 cut(s)	111
SchI	GAGTC	4 cut(s)	532, 798, 955, 1555
SduI	GDGCHC	4 cut(s)	134, 1299, 1757, 2682
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	3 cut(s)	2473, 2573, 2754
SmiMI	CAYNNNNRTG	4 cut(s)	125, 495, 1368, 1958
SmlI	CTYRAG	5 cut(s)	313, 542, 1685, 1814, 2651
SmoI	CTYRAG	5 cut(s)	313, 542, 1685, 1814, 2651
SsiI	CCGC	4 cut(s)	860, 1995, 2466, 2744
SspI	AATATT	2 cut(s)	1424, 2735
SspMI	CTAG	6 cut(s)	384, 515, 525, 1073, 1187, 2223
SstI	GAGCTC	1 cut(s)	1299
StyI	CCWWGG	1 cut(s)	1435
TaaI	ACNGT	4 cut(s)	200, 1232, 2022, 2075
TaiI	ACGT	2 cut(s)	1306, 2149
TaqI	TCGA	5 cut(s)	780, 877, 1395, 1544, 2029
TatI	WGTACW	3 cut(s)	109, 2022, 2067
TauI	GCSGC	1 cut(s)	1998
TfiI	GAWTC	6 cut(s)	167, 564, 658, 1823, 1833, 2031
TscAI	CASTG	2 cut(s)	141, 1619
TseFI	GTSAC	2 cut(s)	1696, 2047
TseI	GCWGC	7 cut(s)	644, 1064, 1169, 2291, 2463, 2586, 2711
Tsp45I	GTSAC	2 cut(s)	1696, 2047
TspGWI	ACGGA	2 cut(s)	602, 1967
TspRI	CASTG	2 cut(s)	141, 1619
Van91I	CCANNNNNTGG	1 cut(s)	26
VneI	GTGCAC	1 cut(s)	1753
VpaK11BI	GGWCC	3 cut(s)	2473, 2573, 2754
VspI	ATTAAT	2 cut(s)	1032, 1343
XapI	RAATTY	4 cut(s)	443, 652, 677, 1006
XceI	RCATGY	4 cut(s)	729, 1520, 1744, 2326
XmnI	GAANNNNTTC	1 cut(s)	2231
XspI	CTAG	6 cut(s)	384, 515, 525, 1073, 1187, 2223
ZrmI	AGTACT	1 cut(s)	111
Zsp2I	ATGCAT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.