Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Reverse (-)

91964782 .. 91975667

Gene Structure 10886 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGAAAAACGCGGGCACGTTGCTATGGCAGCACCCGACCCAGCCCAATCCAGTGCTTCTTCTTCTTCTCGGCATCGTCTCTGCTCTCTGTAACCATTCCAGGATAAATGATGCTGTTCCTATACCTAAGCAGTTTCAGAAGTTCCTCGAGTTATGCAGGGTGCCTGTGATTTATATTGACCCAATAGCATCGTCAAGATTTCATTTTAGAATCTTCATAGCATTGTTGCAGGCTTCTAGTCTAGAACTTGAGATGCTTTTAACAGGATTGCGAGCATGTAACACTCTCTTCTCTCTCTCTCTCTCTCATTTTTCAAAATGTAGAAGTTCAGGAAAATTGTGTCTGGCTTTCAAGCAGGATTTGGTACTGCACCAGATTATACGTCGGGGCCACTGGCCAACCTCTGTGCTACTTTTTCAGGCAATAAATTCGACGCCGGAATCCGGTAGCCGGATTTCGTTTTATTCTTTTAAGCCCGTATTATATGCACTTCAAAATTTATGGCACAAAGAAATTGGAGCTAAGTGGTTTCGAATGATGCTTGAACATGAAGTCCAGCCGAATGTTGCAACATTTGGTATGCTGATGGGGCTGTACCAGAAGGGGTGGAATGTTGAGGAAGCCGAGTTCACTTTTTCTCGAATGAGGAACTTTGGGATTGTATGTCATTCTGCATACTCGGCAATGACCACAATTTATACCCGTATGAATTTGTATGACAGAGCAGAAGAGATCATTGGCTTAATGAAAGAAGATGGAGTGAGACCGAATTTGGATAACTGGTTGGTGATGATTAATGCTTATTGTCAGCAGGGAAAAGTAGAAGCTGCTGAACTAGTATTAGGCTCCATGAAAGAAGCAGGGTTTTCTCCAAACATTGTTGCATACAATACATTGATAACTGGATATGGGAAGGCATCTAAAATGGACGCTGCTCATCACCTATTTCTAGGCATTAAGAAAGTCGGATTAGAGCCTGATGAAACTACTTACCGGTCCATGATTGAAGGTTGGGGTAGAGCTGACAATTATAAGGAAGCAGATTGGTACTACAAAGAGCTCAAGCGTTTGGGCTACAAGCCTAATTCGTCTAACCTGTACACACTAATAAACTTGCAAGCCAAACATGAGGATGAAGAGGGGGCCATCAGAACTCTTGATGATATGCAGAAGATAGGATGCCAATATTCATCAATGCTTGGCACTCTTCTGCAAGCATATGAGAAGGCTGGAAGGATTGATAAAGTGCCTTTCCTTTTGAGAGGTTCTTTATATCAACACGTTCTTGTCAGCCGGACTTCTTGTTCGAGTCTTGTCATGGCTTATGTGAAGCACTGCTTGGTGGATGATACTATGAAAGTGTTGAGGGAAAAACAGTGGAAGGATCCACATTTTGAAGATAACTTGTACCATTTGTTAATATGCTCGTGTAAAGAGTTGGGTCATCTTGAGAATGCTGTTACAATATACAATCAAATGCCCAGACATGATGGCAAGCCAAACATGCACATCATGTGCACAATGATTGATATTTATAGCATCATGGATCTCTTCTCTGAAGCAGAGAAAGTTTATGTCGAGTTGAAATCCTCAGGAATCGCCTTGGACATGATTGCCTATGGTATTGCTGTAAGAATGTATGTCAAAGCTGGATCTTTGGAAGATGCTTGCTCTGTTCTGGACGCAATGGACAAACAGGAGGGCATAGTTCCAGACATCTACATGTTACGTGATATGTTCCGTATTTATCAAAAATGTGGCAGACTTGATAAGTTGAAAGATTTGTACTATCGAATCTTGAAGACTAGAGTGACTTGGGATCAGGAAATGTACAATTGTGTCATAAACTGCTGTTCTCGTGCCTTGCCAATTGATGAGATCTCAGAGATGTTTGATCAGATGCTTCAACGTGGGTTTGTACCTAATACCATAACCTTCAATGTCATGCTTGATGTATATGGGAAAGCAAAGCTTTTAAAGAAGGCTAGGAAGTTGTTCTTGATGGCCCAGAAATGGGATCTGGTTGATACAATCTCTTACAATACTATTATAGCTGCGCATGGGAGAAACAGAGACTTCAAAAGCATGTCTTCAACGGTACGAGAGATGCAGTTTAAAGGATTTTCAGTTTCCCTTGAAGTCTACAATAGTATGCTGAATGCTTATGGGAAAGAAAGCCAAATGGAGCGGTTCAGAAGCATTTTGCAAAGAATGAAGGAGACAAGCTGTGCTTCGGACCATCACACCTACAACATTATGATCAATATCTATGGAGAGCAAGGATGGATTGATGAAGTTGCTGGGGTGCTGACTGAGTTGAAAGAATGTGGACTGGGACCTGATCTGTGTAGCTATAACACATTGATTAAGGCATATGGAATTGCAGGAATGGTCGAAGATGCTGTCCGTTTGCTCAGGGAAATGAGAGATAATGGTATAGAGCCTGATAAGATTACATACATCAATCTGATTGCTGCACTGCGAAAAAATGATGAATATTTGGAGGCTGTAAAGTGGTCCTTGTGGATGAAGCAGATGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

848

Amino Acids

97.31

Weight (kDa)

8.06

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	263 - 293	9.1e-06	PPR repeat family
PPR_3	PF13812	264 - 305	1.9e-07	Pentatricopeptide repeat domain
PPR_3	PF13812	280 - 336	3.6e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	291 - 337	4.1e-13	PPR repeat family
PPR_2	PF13041	610 - 653	2.6e-09	PPR repeat family
PPR_3	PF13812	700 - 759	1e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	703 - 824	1e-05	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	714 - 755	3.2e-09	PPR repeat family
TPR_24	PF23276	769 - 836	8.7e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	777 - 809	4.2e-09	PPR repeat
PPR_2	PF13041	780 - 827	2e-13	PPR repeat family
PPR	PF01535	784 - 813	2.7e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1032
Acc16I	TGCGCA	1 cut(s)	2058
AccB1I	GGYRCC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	2188
AccI	GTMKAC	1 cut(s)	2142
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	11, 2188
AclWI	GGATC	6 cut(s)	1379, 1392, 1554, 1660, 1827, 2025
AcoI	YGGCCR	1 cut(s)	395
AcsI	RAATTY	4 cut(s)	427, 496, 709, 769
AcuI	CTGAAG	1 cut(s)	1578
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	9 cut(s)	366, 596, 1049, 1100, 1409, 1787, 1832, 1920, 2100
AfiI	CCNNNNNNNGG	4 cut(s)	443, 450, 2013, 2014
AflIII	ACRYGT	2 cut(s)	1279, 1722
AgeI	ACCGGT	1 cut(s)	993
AhlI	ACTAGT	1 cut(s)	835
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	4 cut(s)	720, 752, 1322, 1354
AloI	GAACNNNNNNTCC	6 cut(s)	537, 569, 611, 643, 1288, 1320
AluBI	AGCT	9 cut(s)	521, 827, 1022, 1060, 1649, 1972, 2054, 2226, 2352
AluI	AGCT	9 cut(s)	521, 827, 1022, 1060, 1649, 1972, 2054, 2226, 2352
Alw21I	GWGCWC	2 cut(s)	1062, 1520
Alw26I	GTCTC	4 cut(s)	82, 757, 2067, 2213
Alw44I	GTGCAC	1 cut(s)	1516
AlwI	GGATC	6 cut(s)	1379, 1392, 1554, 1660, 1827, 2025
Ama87I	CYCGRG	1 cut(s)	146
AoxI	GGCC	4 cut(s)	388, 395, 1143, 2004
ApaLI	GTGCAC	1 cut(s)	1516
ApeKI	GCWGC	5 cut(s)	28, 827, 932, 2054, 2474
ApoI	RAATTY	4 cut(s)	427, 496, 709, 769
ArsI	GACNNNNNNTTYG	4 cut(s)	1288, 1320, 2388, 2420
AseI	ATTAAT	1 cut(s)	795
AsiGI	ACCGGT	1 cut(s)	993
Asp700I	GAANNNNTTC	1 cut(s)	1994
AspLEI	GCGC	1 cut(s)	2059
AspS9I	GGNCC	7 cut(s)	388, 996, 1143, 2005, 2236, 2336, 2517
AsuHPI	GGTGA	2 cut(s)	799, 932
AsuII	TTCGAA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	4 cut(s)	996, 2236, 2336, 2517
AxyI	CCTNAGG	1 cut(s)	1591
BaeGI	GKGCMC	2 cut(s)	17, 1520
BalI	TGGCCA	1 cut(s)	397
BamHI	GGATCC	1 cut(s)	1384
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	1 cut(s)	1062
BauI	CACGAG	2 cut(s)	1426, 1857
BbsI	GAAGAC	2 cut(s)	1808, 2082
Bbv12I	GWGCWC	2 cut(s)	1062, 1520
BbvI	GCAGC	5 cut(s)	40, 814, 919, 2041, 2461
BccI	CCATC	8 cut(s)	580, 749, 1154, 1484, 1996, 2247, 2277, 2530
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	1 cut(s)	100
BclI	TGATCA	2 cut(s)	1894, 2259
BcoDI	GTCTC	4 cut(s)	82, 757, 2067, 2213
BcuI	ACTAGT	1 cut(s)	835
BfaI	CTAG	6 cut(s)	237, 242, 836, 950, 1806, 1986
BglII	AGATCT	1 cut(s)	1878
BisI	GCNGC	5 cut(s)	29, 828, 933, 2055, 2475
BlsI	GCNGC	5 cut(s)	30, 829, 934, 2056, 2476
Bme1390I	CCNGG	1 cut(s)	100
Bme18I	GGWCC	4 cut(s)	996, 2236, 2336, 2517
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	7 cut(s)	388, 996, 1143, 2005, 2236, 2336, 2517
BmiI	GGNNCC	6 cut(s)	162, 389, 847, 1144, 1386, 2337
BmrFI	CCNGG	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	2342
BmuI	ACTGGG	1 cut(s)	2342
BpiI	GAAGAC	2 cut(s)	1808, 2082
Bpu10I	CCTNAGC	2 cut(s)	126, 2414
Bpu14I	TTCGAA	1 cut(s)	532
BpuEI	CTTGAG	3 cut(s)	269, 1046, 1469
BsaAI	YACGTR	1 cut(s)	1730
BsaBI	GATNNNNATC	1 cut(s)	2264
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	757
BsaJI	CCNNGG	1 cut(s)	1602
BsaWI	WCCGGW	2 cut(s)	443, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	443, 450, 2013, 2014
Bse118I	RCCGGY	1 cut(s)	993
Bse1I	ACTGG	5 cut(s)	50, 398, 785, 907, 2337
Bse21I	CCTNAGG	1 cut(s)	1591
Bse3DI	GCAATG	2 cut(s)	690, 1692
Bse8I	GATNNNNATC	1 cut(s)	2264
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	1602
BseGI	GGATG	5 cut(s)	1138, 1184, 1351, 2288, 2532
BseJI	GATNNNNATC	1 cut(s)	2264
BseLI	CCNNNNNNNGG	4 cut(s)	443, 450, 2013, 2014
BseMI	GCAATG	2 cut(s)	690, 1692
BseMII	CTCAG	4 cut(s)	1605, 1896, 2304, 2428
BseNI	ACTGG	5 cut(s)	50, 398, 785, 907, 2337
BseSI	GKGCMC	2 cut(s)	17, 1520
BseXI	GCAGC	5 cut(s)	40, 814, 919, 2041, 2461
BseYI	CCCAGC	2 cut(s)	39, 2300
BsgI	GTGCAG	2 cut(s)	353, 2460
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	4 cut(s)	390, 397, 1145, 2006
BshNI	GGYRCC	1 cut(s)	160
BshTI	ACCGGT	1 cut(s)	993
BsiHKAI	GWGCWC	2 cut(s)	1062, 1520
BsiHKCI	CYCGRG	1 cut(s)	146
BsiSI	CCGG	5 cut(s)	437, 444, 451, 994, 1294
BslFI	GGGAC	1 cut(s)	2349
BslI	CCNNNNNNNGG	4 cut(s)	443, 450, 2013, 2014
BsmAI	GTCTC	4 cut(s)	82, 757, 2067, 2213
BsmBI	CGTCTC	1 cut(s)	82
BsmFI	GGGAC	1 cut(s)	2349
BsmI	GAATGC	2 cut(s)	1459, 2164
BsnI	GGCC	4 cut(s)	390, 397, 1145, 2006
Bso31I	GGTCTC	1 cut(s)	757
BsoBI	CYCGRG	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	532
Bsp1286I	GDGCHC	3 cut(s)	17, 1062, 1520
Bsp1407I	TGTACA	2 cut(s)	1098, 1830
BspACI	CCGC	2 cut(s)	11, 2188
BspANI	GGCC	4 cut(s)	390, 397, 1145, 2006
BspCNI	CTCAG	4 cut(s)	1604, 1895, 2305, 2427
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	6 cut(s)	162, 389, 847, 1144, 1386, 2337
BspPI	GGATC	6 cut(s)	1379, 1392, 1554, 1660, 1827, 2025
BspT104I	TTCGAA	1 cut(s)	532
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	757
BsrBI	CCGCTC	1 cut(s)	2188
BsrDI	GCAATG	2 cut(s)	690, 1692
BsrFI	RCCGGY	1 cut(s)	993
BsrGI	TGTACA	2 cut(s)	1098, 1830
BsrI	ACTGG	5 cut(s)	50, 398, 785, 907, 2337
BssAI	RCCGGY	1 cut(s)	993
BssECI	CCNNGG	1 cut(s)	1602
BssNI	GRCGYC	1 cut(s)	434
BssSI	CACGAG	2 cut(s)	1426, 1857
BssT1I	CCWWGG	1 cut(s)	1602
Bst2BI	CACGAG	2 cut(s)	1426, 1857
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	1377, 2098
Bst6I	CTCTTC	5 cut(s)	293, 723, 1131, 1212, 1556
BstACI	GRCGYC	1 cut(s)	434
BstAUI	TGTACA	2 cut(s)	1098, 1830
BstBAI	YACGTR	1 cut(s)	1730
BstBI	TTCGAA	1 cut(s)	532
BstC8I	GCNNGC	7 cut(s)	13, 231, 273, 1119, 1215, 1496, 1669
BstDEI	CTNAG	6 cut(s)	126, 522, 1591, 1882, 2313, 2414
BstF5I	GGATG	5 cut(s)	1138, 1184, 1351, 2288, 2532
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	2059
BstMAI	GTCTC	4 cut(s)	82, 757, 2067, 2213
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 589, 680, 1504
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	4 cut(s)	279, 1507, 1726, 2089
BstSCI	CCNGG	1 cut(s)	98
BstSLI	GKGCMC	2 cut(s)	17, 1520
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	5 cut(s)	40, 814, 919, 2041, 2461
BstV2I	GAAGAC	2 cut(s)	1808, 2082
BstX2I	RGATCY	5 cut(s)	1384, 1546, 1652, 1878, 2017
BstYI	RGATCY	5 cut(s)	1384, 1546, 1652, 1878, 2017
Bsu36I	CCTNAGG	1 cut(s)	1591
BsuRI	GGCC	4 cut(s)	390, 397, 1145, 2006
BtsCI	GGATG	5 cut(s)	1138, 1184, 1351, 2288, 2532
BtsI	GCAGTG	2 cut(s)	1333, 2477
BtsIMutI	CAGTG	5 cut(s)	57, 391, 1333, 1382, 2477
Cac8I	GCNNGC	7 cut(s)	13, 231, 273, 1119, 1215, 1496, 1669
CfoI	GCGC	1 cut(s)	2059
Cfr10I	RCCGGY	1 cut(s)	993
Cfr13I	GGNCC	7 cut(s)	388, 996, 1143, 2005, 2236, 2336, 2517
CseI	GACGC	3 cut(s)	442, 938, 1691
Csp6I	GTAC	9 cut(s)	365, 595, 1048, 1099, 1408, 1786, 1831, 1919, 2099
CspAI	ACCGGT	1 cut(s)	993
CviQI	GTAC	9 cut(s)	365, 595, 1048, 1099, 1408, 1786, 1831, 1919, 2099
DdeI	CTNAG	6 cut(s)	126, 522, 1591, 1882, 2313, 2414
DraI	TTTAAA	2 cut(s)	1977, 2116
EaeI	YGGCCR	1 cut(s)	395
Eam1104I	CTCTTC	5 cut(s)	293, 723, 1131, 1212, 1556
EarI	CTCTTC	5 cut(s)	293, 723, 1131, 1212, 1556
Ecl136II	GAGCTC	1 cut(s)	1060
Eco130I	CCWWGG	1 cut(s)	1602
Eco24I	GRGCYC	1 cut(s)	1062
Eco31I	GGTCTC	1 cut(s)	757
Eco47I	GGWCC	4 cut(s)	996, 2236, 2336, 2517
Eco53kI	GAGCTC	1 cut(s)	1060
Eco57I	CTGAAG	1 cut(s)	1578
Eco81I	CCTNAGG	1 cut(s)	1591
Eco88I	CYCGRG	1 cut(s)	146
EcoICRI	GAGCTC	1 cut(s)	1060
EcoO109I	RGGNCCY	1 cut(s)	2336
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	1602
EcoT38I	GRGCYC	1 cut(s)	1062
ErhI	CCWWGG	1 cut(s)	1602
Esp3I	CGTCTC	1 cut(s)	82
FaqI	GGGAC	1 cut(s)	2349
FauI	CCCGC	1 cut(s)	4
FauNDI	CATATG	2 cut(s)	1219, 2374
FbaI	TGATCA	2 cut(s)	1894, 2259
FblI	GTMKAC	1 cut(s)	2142
Fnu4HI	GCNGC	5 cut(s)	29, 828, 933, 2055, 2475
FokI	GGATG	5 cut(s)	1145, 1191, 1358, 2295, 2539
FriOI	GRGCYC	1 cut(s)	1062
Fsp4HI	GCNGC	5 cut(s)	29, 828, 933, 2055, 2475
FspBI	CTAG	6 cut(s)	237, 242, 836, 950, 1806, 1986
FspI	TGCGCA	1 cut(s)	2058
GlaI	GCGC	1 cut(s)	2058
GluI	GCNGC	5 cut(s)	29, 828, 933, 2055, 2475
GsaI	CCCAGC	2 cut(s)	43, 2304
HaeIII	GGCC	4 cut(s)	390, 397, 1145, 2006
HapII	CCGG	5 cut(s)	437, 444, 451, 994, 1294
HgaI	GACGC	3 cut(s)	442, 938, 1691
HhaI	GCGC	1 cut(s)	2059
Hin1I	GRCGYC	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	2057
HinP1I	GCGC	1 cut(s)	2057
HindIII	AAGCTT	1 cut(s)	1970
HinfI	GANTC	5 cut(s)	210, 440, 1309, 1596, 1794
HpaII	CCGG	5 cut(s)	437, 444, 451, 994, 1294
HphI	GGTGA	2 cut(s)	799, 932
Hpy166II	GTNNAC	5 cut(s)	630, 1101, 1518, 2143, 2330
Hpy188I	TCNGA	9 cut(s)	138, 968, 1151, 1558, 1885, 1899, 2195, 2236, 2469
Hpy8I	GTNNAC	5 cut(s)	630, 1101, 1518, 2143, 2330
Hpy99I	CGWCG	2 cut(s)	387, 436
HpyAV	CCTTC	9 cut(s)	595, 907, 1001, 1219, 1227, 1375, 1945, 1975, 2209
HpyCH4III	ACNGT	2 cut(s)	1377, 2098
HpyCH4IV	ACGT	5 cut(s)	17, 382, 1281, 1729, 1909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 589, 680, 1504
HpyF3I	CTNAG	6 cut(s)	126, 522, 1591, 1882, 2313, 2414
HpySE526I	ACGT	5 cut(s)	17, 382, 1281, 1729, 1909
Hsp92I	GRCGYC	1 cut(s)	434
HspAI	GCGC	1 cut(s)	2057
Ksp22I	TGATCA	2 cut(s)	1894, 2259
LmnI	GCTCC	3 cut(s)	518, 851, 2185
Lsp1109I	GCAGC	5 cut(s)	40, 814, 919, 2041, 2461
MaeI	CTAG	6 cut(s)	237, 242, 836, 950, 1806, 1986
MaeII	ACGT	5 cut(s)	17, 382, 1281, 1729, 1909
MaeIII	GTNAC	5 cut(s)	89, 278, 1459, 1725, 1810
MbiI	CCGCTC	1 cut(s)	2188
MfeI	CAATTG	2 cut(s)	1834, 1869
MflI	RGATCY	5 cut(s)	1384, 1546, 1652, 1878, 2017
MhlI	GDGCHC	3 cut(s)	17, 1062, 1520
MlsI	TGGCCA	1 cut(s)	397
MluNI	TGGCCA	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	1318
MmeI	TCCRAC	1 cut(s)	946
Mox20I	TGGCCA	1 cut(s)	397
MroXI	GAANNNNTTC	1 cut(s)	1994
MscI	TGGCCA	1 cut(s)	397
MseI	TTAA	9 cut(s)	260, 471, 743, 795, 957, 1418, 1976, 2115, 2367
MslI	CAYNNNNRTG	2 cut(s)	1131, 1721
Msp20I	TGGCCA	1 cut(s)	397
MspI	CCGG	5 cut(s)	437, 444, 451, 994, 1294
MspR9I	CCNGG	1 cut(s)	100
MunI	CAATTG	2 cut(s)	1834, 1869
Mva1269I	GAATGC	2 cut(s)	1459, 2164
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	28, 589, 680, 1504
NdeI	CATATG	2 cut(s)	1219, 2374
NlaIV	GGNNCC	6 cut(s)	162, 389, 847, 1144, 1386, 2337
NmeAIII	GCCGAG	3 cut(s)	48, 649, 659
NmuCI	GTSAC	1 cut(s)	1810
NsbI	TGCGCA	1 cut(s)	2058
NspI	RCATGY	4 cut(s)	279, 1507, 1726, 2089
NspV	TTCGAA	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	146
PciI	ACATGT	1 cut(s)	1722
PctI	GAATGC	2 cut(s)	1459, 2164
PdmI	GAANNNNTTC	1 cut(s)	1994
PfeI	GAWTC	4 cut(s)	210, 440, 1596, 1794
PfoI	TCCNGGA	1 cut(s)	98
PinAI	ACCGGT	1 cut(s)	993
PkrI	GCNGC	5 cut(s)	30, 829, 934, 2056, 2476
PleI	GAGTC	1 cut(s)	1317
PpsI	GAGTC	1 cut(s)	1317
Ppu21I	YACGTR	1 cut(s)	1730
PpuMI	RGGWCCY	1 cut(s)	2336
PscI	ACATGT	1 cut(s)	1722
PshBI	ATTAAT	1 cut(s)	795
PsiI	TTATAA	1 cut(s)	1032
Psp124BI	GAGCTC	1 cut(s)	1062
Psp5II	RGGWCCY	1 cut(s)	2336
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	2 cut(s)	39, 2300
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	6 cut(s)	162, 389, 847, 1144, 1386, 2337
PspPI	GGNCC	7 cut(s)	388, 996, 1143, 2005, 2236, 2336, 2517
PspPPI	RGGWCCY	1 cut(s)	2336
PspXI	VCTCGAGB	1 cut(s)	146
PsuI	RGATCY	5 cut(s)	1384, 1546, 1652, 1878, 2017
RsaI	GTAC	9 cut(s)	366, 596, 1049, 1100, 1409, 1787, 1832, 1920, 2100
RsaNI	GTAC	9 cut(s)	365, 595, 1048, 1099, 1408, 1786, 1831, 1919, 2099
RseI	CAYNNNNRTG	2 cut(s)	1131, 1721
SacI	GAGCTC	1 cut(s)	1062
SaqAI	TTAA	9 cut(s)	260, 471, 743, 795, 957, 1418, 1976, 2115, 2367
SatI	GCNGC	5 cut(s)	29, 828, 933, 2055, 2475
Sau96I	GGNCC	7 cut(s)	388, 996, 1143, 2005, 2236, 2336, 2517
SchI	GAGTC	1 cut(s)	1318
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	17, 1062, 1520
Sfr274I	CTCGAG	1 cut(s)	146
SfuI	TTCGAA	1 cut(s)	532
SinI	GGWCC	4 cut(s)	996, 2236, 2336, 2517
SlaI	CTCGAG	1 cut(s)	146
SmiMI	CAYNNNNRTG	2 cut(s)	1131, 1721
SmlI	CTYRAG	4 cut(s)	146, 248, 1061, 1448
SmoI	CTYRAG	4 cut(s)	146, 248, 1061, 1448
SpeI	ACTAGT	1 cut(s)	835
SsiI	CCGC	2 cut(s)	11, 2188
SspI	AATATT	2 cut(s)	1187, 2498
SspMI	CTAG	6 cut(s)	237, 242, 836, 950, 1806, 1986
SstI	GAGCTC	1 cut(s)	1062
StyD4I	CCNGG	1 cut(s)	98
StyI	CCWWGG	1 cut(s)	1602
TaaI	ACNGT	2 cut(s)	1377, 2098
TaiI	ACGT	5 cut(s)	20, 385, 1284, 1732, 1912
TaqI	TCGA	8 cut(s)	147, 431, 532, 640, 1307, 1578, 1792, 2394
TaqII	GACCGA	1 cut(s)	781
TatI	WGTACW	3 cut(s)	1098, 1785, 1830
TfiI	GAWTC	4 cut(s)	210, 440, 1596, 1794
Tru1I	TTAA	9 cut(s)	260, 471, 743, 795, 957, 1418, 1976, 2115, 2367
Tru9I	TTAA	9 cut(s)	260, 471, 743, 795, 957, 1418, 1976, 2115, 2367
TscAI	CASTG	5 cut(s)	57, 398, 1340, 1382, 2484
TseFI	GTSAC	1 cut(s)	1810
TseI	GCWGC	5 cut(s)	28, 827, 932, 2054, 2474
Tsp45I	GTSAC	1 cut(s)	1810
TspGWI	ACGGA	2 cut(s)	1730, 2396
TspRI	CASTG	5 cut(s)	57, 398, 1340, 1382, 2484
VneI	GTGCAC	1 cut(s)	1516
VpaK11BI	GGWCC	4 cut(s)	996, 2236, 2336, 2517
VspI	ATTAAT	1 cut(s)	795
XapI	RAATTY	4 cut(s)	427, 496, 709, 769
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	4 cut(s)	279, 1507, 1726, 2089
XhoI	CTCGAG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	2142
XmnI	GAANNNNTTC	1 cut(s)	1994
XspI	CTAG	6 cut(s)	237, 242, 836, 950, 1806, 1986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.