Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001457

Physical Location & Seq

Genomic Coordinates Forward (+)

55258193 .. 55261412

Gene Structure 3220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0458400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1560 bp

ATGGGAGTTGTGACAGTTTCTAGCTCAGTTTCTAGGACTCCGTTAGGATTGAGCCCAAAATTGGCATCAAGTCAGAGATCAACGTTGAGAAAGCCATTGATTGTTGCCTTTAGAACAGATAAATCCAATAAGAACGCATTGGTTGCGCCTCAGGAGAAAGTACCTTTGCCAATAGAAACACGAAAGAAGGTCCAAAAACTAGGGAAAACTCGAAAGCTCCCCGAAAGTGTAAAAGCTGCATTGATAGAGGAGGCTCCTACTTGTAATTTGGAACTGGATTACAATGAAGCTGCTGCCAAGCTGGAAAACCTGTACAAGCGCAGCCCCGAGACTGAAGCTTCGGATTTGGAAAATGTAGATGGATTGATGATCAAGAGAAGTCGCAAAAGGAGGAAGAAGATCAGTGAAGTTGATGACAAAGTAGAGAAGACAAAAAGCGATGACATTGTGGTTGGGAGCAGGACAAAGAAGGCTAAAAGATTGAGTCTTGATAAAAGGGTTGCGTTGAAATGGAATAAGGACGAGAAAGTGGCTGCTCCAGTAGTTCGAAAGAGAAAAGATAGAAAGAGTGAGAATCAGATGATTGAGGAGCTTGTAAGGGAGTATTCGGCTTCAACTGATCTCGTCAGTTTCGACTGGAAAAAGATGAGGATTCCTCCAGTTCTTACTTCTTCTGAGCATACTTGGTTGTTCAAGCTAATGCAACCTATGAAGGCTCTTCTTCAAGTGAAAGAGACTCTGCAGAAAGATTTGGGAAGAGAACCAAATAAGGGTGAACTAGCTGAGGCGACAAGTATGAGTGTGGTTCAAGTGAAAAAACACTTGGAGGTTGGTCGAGCTGCAAGAAACAAACTCATCAAGCATAATCTCCGGCTTGTGTTATTTGTCATTAACAAATACTTTCAAGACTTTGCAAATGGTCCAAAATTTCAAGACCTTTGTCAGGCAGGAGTGAAGGGACTTATCACGGCAATTGATCGCTTTGAACCACAAAGAAGATTCCGGCTTTCCACATATGGTCTTTTCTGGATCAGGCATGCCATCATACGTTCCATGACACTATCAAGCTTTACTCGTGTCTCCTTTGGCCTTGAGTCTGTTAGGGCGGAAATCCAGAAAGCCAAGCTTGAAATGTTGGTTCAGCTTAAAAGAATGCCAACAGAGGACGAGATAATTGAAAAGGTTGGAATTTCCCCTGAGAGGTATCATGAAGTAATGAGGGCCTCAAAACCTGTCTTCTCTCTTCATTCAAGGCATTCAGTCACACAAGAGGAATTTATAAACGCTATTACTGATGTTGACGGCGTTGAAGGTGATAACCGGCGGAAACCTGCTCTTCTCAGGCTTGCTATCGATGATGTGCTTGATTCCCTGAAGCCAAAAGAAAGCTTGGTGATCAGGCAGAGATATGGCCTTGATGGCAAGGGTGACAGAACATTAGGGGAGATAGCTGGAAACTTGAACATTTCAAGAGAAATGGTTCGAAAGCATGAAGTTAAGGCCCTCATGAAGCTCAAGCATCCAGCTCGAGTAGACTATCTTCGCAGATACATAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000959 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006351 GO:0006390 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030880 GO:0032774 GO:0032991 GO:0034062 GO:0034245 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0061695 GO:0071704 GO:0090304 GO:0097659 GO:0097747 GO:0098798 GO:0140053 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNA_pol RPOL_N

Protein Analysis

519

Amino Acids

59.3

Weight (kDa)

9.99

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma70_r3	PF04539	240 - 280	1e-05	Sigma-70 region 3
Sigma70_r2	PF04542	285 - 351	9.1e-11	Sigma-70 region 2
Sigma70_r3	PF04539	369 - 434	2.3e-11	Sigma-70 region 3
Sigma70_r4	PF04545	454 - 507	1e-13	Sigma-70, region 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820
fragaria_vesca	FvH4_1g00560 FvH4_1g00560 FvH4_1g00560
malus_domestica	MD02G1004700.v1.1 MD15G1148500.v1.1
prunus_persica	Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1
pyrus_communis	pycom15g13280
rosa_chinensis	RchiOBHm_Chr2g0085191
rosa_laevigata	RLG00000015665
rosa_multiflora	Rmu_sc0008647.1_g000004 Rmu_sc0011989.1_g000004
rosa_rugosa	Rorug01G0011700 Rorug01G0458200 Rorug01G0458300 Rorug01G0458400 Rorug01G0458400
rosa_samantha	Rh1BG016600 Rh2AG006700 Rh2BG007400 Rh2CG008200 Rh2DG008400
rosa_wichuraiana	Rw2G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1280
Acc36I	ACCTGC	1 cut(s)	1339
AccI	GTMKAC	1 cut(s)	1533
AciI	CCGC	2 cut(s)	1106, 1324
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	1 cut(s)	1037
AcsI	RAATTY	3 cut(s)	926, 1188, 1274
AcuI	CTGAAG	2 cut(s)	354, 1394
AfaI	GTAC	2 cut(s)	162, 314
AfiI	CCNNNNNNNGG	4 cut(s)	61, 770, 943, 1200
AjuI	GAANNNNNNNTTGG	2 cut(s)	806, 838
Alw26I	GTCTC	3 cut(s)	323, 728, 1084
AlwI	GGATC	1 cut(s)	1037
Ama87I	CYCGRG	2 cut(s)	326, 1527
AoxI	GGCC	4 cut(s)	1087, 1221, 1411, 1500
ApeKI	GCWGC	6 cut(s)	236, 290, 293, 321, 533, 839
ApoI	RAATTY	3 cut(s)	926, 1188, 1274
ArsI	GACNNNNNNTTYG	2 cut(s)	322, 354
Asp700I	GAANNNNTTC	1 cut(s)	1479
AspLEI	GCGC	2 cut(s)	148, 321
AspS9I	GGNCC	4 cut(s)	190, 920, 1221, 1501
AsuHPI	GGTGA	4 cut(s)	785, 1325, 1405, 1439
AsuII	TTCGAA	2 cut(s)	547, 1483
AvaI	CYCGRG	2 cut(s)	326, 1527
AvaII	GGWCC	2 cut(s)	190, 920
AxyI	CCTNAGG	1 cut(s)	150
BanII	GRGCYC	1 cut(s)	56
BarI	GAAGNNNNNNTAC	2 cut(s)	1524, 1556
BauI	CACGAG	1 cut(s)	1074
BbsI	GAAGAC	2 cut(s)	434, 1228
BbvCI	CCTCAGC	1 cut(s)	783
BbvI	GCAGC	6 cut(s)	223, 277, 280, 333, 520, 826
BccI	CCATC	3 cut(s)	353, 1049, 1412
BceAI	ACGGC	2 cut(s)	984, 1318
BcgI	CGANNNNNNTGC	2 cut(s)	1508, 1542
BclI	TGATCA	2 cut(s)	369, 1395
BcoDI	GTCTC	3 cut(s)	323, 728, 1084
BfaI	CTAG	4 cut(s)	21, 33, 200, 779
BfmI	CTRYAG	1 cut(s)	740
BfuAI	ACCTGC	1 cut(s)	1339
BglI	GCCNNNNNGGC	1 cut(s)	1419
BisI	GCNGC	6 cut(s)	237, 291, 294, 322, 534, 840
BlsI	GCNGC	6 cut(s)	238, 292, 295, 323, 535, 841
Bme18I	GGWCC	2 cut(s)	190, 920
BmeT110I	CYCGRG	2 cut(s)	326, 1527
BmgT120I	GGNCC	4 cut(s)	190, 920, 1221, 1501
BmiI	GGNNCC	1 cut(s)	255
BmsI	GCATC	2 cut(s)	74, 1528
BoxI	GACNNNNGTC	1 cut(s)	939
BpiI	GAAGAC	2 cut(s)	434, 1228
BplI	GAGNNNNNCTC	2 cut(s)	640, 672
BpmI	CTGGAG	2 cut(s)	522, 642
Bpu10I	CCTNAGC	1 cut(s)	783
Bpu14I	TTCGAA	2 cut(s)	547, 1483
BpuEI	CTTGAG	2 cut(s)	1112, 1499
Bsa29I	ATCGAT	1 cut(s)	1353
Bsc4I	CCNNNNNNNGG	4 cut(s)	61, 770, 943, 1200
Bse118I	RCCGGY	1 cut(s)	1320
Bse1I	ACTGG	4 cut(s)	279, 539, 641, 659
Bse21I	CCTNAGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	1353
BseGI	GGATG	1 cut(s)	1519
BseLI	CCNNNNNNNGG	4 cut(s)	61, 770, 943, 1200
BseMII	CTCAG	6 cut(s)	39, 164, 666, 774, 1188, 1354
BseNI	ACTGG	4 cut(s)	279, 539, 641, 659
BseRI	GAGGAG	2 cut(s)	263, 602
BseXI	GCAGC	6 cut(s)	223, 277, 280, 333, 520, 826
BshFI	GGCC	4 cut(s)	1089, 1223, 1413, 1502
BshVI	ATCGAT	1 cut(s)	1353
BsiHKCI	CYCGRG	2 cut(s)	326, 1527
BsiSI	CCGG	3 cut(s)	871, 1003, 1321
BslFI	GGGAC	1 cut(s)	972
BslI	CCNNNNNNNGG	4 cut(s)	61, 770, 943, 1200
BsmAI	GTCTC	3 cut(s)	323, 728, 1084
BsmFI	GGGAC	1 cut(s)	972
BsmI	GAATGC	2 cut(s)	1158, 1255
BsnI	GGCC	4 cut(s)	1089, 1223, 1413, 1502
BsoBI	CYCGRG	2 cut(s)	326, 1527
Bsp119I	TTCGAA	2 cut(s)	547, 1483
Bsp1286I	GDGCHC	1 cut(s)	56
Bsp1407I	TGTACA	1 cut(s)	312
Bsp143I	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
BspACI	CCGC	2 cut(s)	1106, 1324
BspANI	GGCC	4 cut(s)	1089, 1223, 1413, 1502
BspCNI	CTCAG	6 cut(s)	38, 163, 667, 775, 1189, 1353
BspDI	ATCGAT	1 cut(s)	1353
BspHI	TCATGA	2 cut(s)	1207, 1506
BspLI	GGNNCC	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	744
BspMI	ACCTGC	1 cut(s)	1339
BspPI	GGATC	1 cut(s)	1037
BspQI	GCTCTTC	2 cut(s)	723, 1341
BspT104I	TTCGAA	2 cut(s)	547, 1483
BsrFI	RCCGGY	1 cut(s)	1320
BsrGI	TGTACA	1 cut(s)	312
BsrI	ACTGG	4 cut(s)	279, 539, 641, 659
BssAI	RCCGGY	1 cut(s)	1320
BssMI	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
BssSI	CACGAG	1 cut(s)	1074
Bst2BI	CACGAG	1 cut(s)	1074
Bst4CI	ACNGT	1 cut(s)	16
Bst6I	CTCTTC	4 cut(s)	723, 751, 1248, 1341
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	312
BstBI	TTCGAA	2 cut(s)	547, 1483
BstC8I	GCNNGC	2 cut(s)	1038, 1347
BstDEI	CTNAG	6 cut(s)	25, 150, 675, 783, 1197, 1340
BstENI	CCTNNNNNAGG	1 cut(s)	941
BstF5I	GGATG	1 cut(s)	1519
BstHHI	GCGC	2 cut(s)	148, 321
BstKTI	GATC	7 cut(s)	80, 372, 402, 622, 979, 1032, 1398
BstMAI	GTCTC	3 cut(s)	323, 728, 1084
BstMBI	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 1419
BstNSI	RCATGY	1 cut(s)	1040
BstPAI	GACNNNNGTC	1 cut(s)	939
BstSFI	CTRYAG	1 cut(s)	740
BstV1I	GCAGC	6 cut(s)	223, 277, 280, 333, 520, 826
BstV2I	GAAGAC	2 cut(s)	434, 1228
Bsu15I	ATCGAT	1 cut(s)	1353
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	1089, 1223, 1413, 1502
BsuTUI	ATCGAT	1 cut(s)	1353
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	1519
BtsIMutI	CAGTG	1 cut(s)	409
BveI	ACCTGC	1 cut(s)	1339
Cac8I	GCNNGC	2 cut(s)	1038, 1347
CciI	TCATGA	2 cut(s)	1207, 1506
CfoI	GCGC	2 cut(s)	148, 321
Cfr10I	RCCGGY	1 cut(s)	1320
Cfr13I	GGNCC	4 cut(s)	190, 920, 1221, 1501
ClaI	ATCGAT	1 cut(s)	1353
Csp6I	GTAC	2 cut(s)	161, 313
CviAII	CATG	5 cut(s)	1037, 1054, 1208, 1490, 1507
CviQI	GTAC	2 cut(s)	161, 313
DdeI	CTNAG	6 cut(s)	25, 150, 675, 783, 1197, 1340
DpnI	GATC	7 cut(s)	79, 371, 401, 621, 978, 1031, 1397
DpnII	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
Eam1104I	CTCTTC	4 cut(s)	723, 751, 1248, 1341
EarI	CTCTTC	4 cut(s)	723, 751, 1248, 1341
EciI	GGCGGA	2 cut(s)	1121, 1339
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	2 cut(s)	190, 920
Eco57I	CTGAAG	2 cut(s)	354, 1394
Eco81I	CCTNAGG	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	326, 1527
EcoNI	CCTNNNNNAGG	1 cut(s)	941
EcoO109I	RGGNCCY	2 cut(s)	1221, 1501
EcoT38I	GRGCYC	1 cut(s)	56
FaeI	CATG	5 cut(s)	1040, 1057, 1211, 1493, 1510
FalI	AAGNNNNNCTT	2 cut(s)	1110, 1142
FaqI	GGGAC	1 cut(s)	972
FatI	CATG	5 cut(s)	1036, 1053, 1207, 1489, 1506
FauNDI	CATATG	1 cut(s)	1015
FbaI	TGATCA	2 cut(s)	369, 1395
FblI	GTMKAC	1 cut(s)	1533
Fnu4HI	GCNGC	6 cut(s)	237, 291, 294, 322, 534, 840
FokI	GGATG	1 cut(s)	1506
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	6 cut(s)	237, 291, 294, 322, 534, 840
FspBI	CTAG	4 cut(s)	21, 33, 200, 779
GlaI	GCGC	2 cut(s)	147, 320
GluI	GCNGC	6 cut(s)	237, 291, 294, 322, 534, 840
GsuI	CTGGAG	2 cut(s)	522, 642
HaeIII	GGCC	4 cut(s)	1089, 1223, 1413, 1502
HapII	CCGG	3 cut(s)	871, 1003, 1321
HhaI	GCGC	2 cut(s)	148, 321
Hin1II	CATG	5 cut(s)	1040, 1057, 1211, 1493, 1510
Hin6I	GCGC	2 cut(s)	146, 319
HinP1I	GCGC	2 cut(s)	146, 319
HincII	GTYRAC	1 cut(s)	1300
HindII	GTYRAC	1 cut(s)	1300
HindIII	AAGCTT	4 cut(s)	336, 1066, 1124, 1387
HinfI	GANTC	8 cut(s)	37, 484, 574, 652, 736, 999, 1094, 1367
HpaII	CCGG	3 cut(s)	871, 1003, 1321
HphI	GGTGA	4 cut(s)	785, 1325, 1405, 1439
Hpy166II	GTNNAC	3 cut(s)	776, 1300, 1534
Hpy188I	TCNGA	4 cut(s)	75, 343, 579, 676
Hpy8I	GTNNAC	3 cut(s)	776, 1300, 1534
HpyAV	CCTTC	5 cut(s)	181, 463, 706, 949, 1304
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	2 cut(s)	83, 1048
HpyCH4V	TGCA	5 cut(s)	239, 703, 742, 842, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 1419
HpyF3I	CTNAG	6 cut(s)	25, 150, 675, 783, 1197, 1340
HpySE526I	ACGT	2 cut(s)	83, 1048
Hsp92II	CATG	5 cut(s)	1040, 1057, 1211, 1493, 1510
HspAI	GCGC	2 cut(s)	146, 319
Ksp22I	TGATCA	2 cut(s)	369, 1395
Kzo9I	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
LguI	GCTCTTC	2 cut(s)	723, 1341
LmnI	GCTCC	5 cut(s)	222, 259, 456, 541, 589
Lsp1109I	GCAGC	6 cut(s)	223, 277, 280, 333, 520, 826
LweI	GCATC	2 cut(s)	74, 1528
MaeI	CTAG	4 cut(s)	21, 33, 200, 779
MaeII	ACGT	2 cut(s)	83, 1048
MaeIII	GTNAC	3 cut(s)	10, 1261, 1427
MalI	GATC	7 cut(s)	79, 371, 401, 621, 978, 1031, 1397
MboI	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
MfeI	CAATTG	1 cut(s)	972
MhlI	GDGCHC	1 cut(s)	56
MluCI	AATT	7 cut(s)	59, 265, 926, 972, 1173, 1188, 1274
MlyI	GAGTC	4 cut(s)	31, 493, 730, 1103
MmeI	TCCRAC	1 cut(s)	1165
MroXI	GAANNNNTTC	1 cut(s)	1479
MseI	TTAA	3 cut(s)	891, 1146, 1497
MspI	CCGG	3 cut(s)	871, 1003, 1321
MunI	CAATTG	1 cut(s)	972
Mva1269I	GAATGC	2 cut(s)	1158, 1255
MwoI	GCNNNNNNNGC	2 cut(s)	143, 1419
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
NlaIII	CATG	5 cut(s)	1040, 1057, 1211, 1493, 1510
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	3 cut(s)	10, 1261, 1427
NspI	RCATGY	1 cut(s)	1040
NspV	TTCGAA	2 cut(s)	547, 1483
PaeI	GCATGC	1 cut(s)	1040
PaeR7I	CTCGAG	1 cut(s)	1527
PagI	TCATGA	2 cut(s)	1207, 1506
PciSI	GCTCTTC	2 cut(s)	723, 1341
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	2 cut(s)	1158, 1255
PdmI	GAANNNNTTC	1 cut(s)	1479
PfeI	GAWTC	4 cut(s)	574, 652, 999, 1367
PkrI	GCNGC	6 cut(s)	238, 292, 295, 323, 535, 841
PleI	GAGTC	4 cut(s)	31, 492, 730, 1102
PpsI	GAGTC	4 cut(s)	31, 492, 730, 1102
PshAI	GACNNNNGTC	1 cut(s)	939
PsiI	TTATAA	1 cut(s)	1280
Psp1406I	AACGTT	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	4 cut(s)	190, 920, 1221, 1501
PspXI	VCTCGAGB	1 cut(s)	1527
PstI	CTGCAG	1 cut(s)	744
RsaI	GTAC	2 cut(s)	162, 314
RsaNI	GTAC	2 cut(s)	161, 313
SapI	GCTCTTC	2 cut(s)	723, 1341
SaqAI	TTAA	3 cut(s)	891, 1146, 1497
SatI	GCNGC	6 cut(s)	237, 291, 294, 322, 534, 840
Sau3AI	GATC	7 cut(s)	77, 369, 399, 619, 976, 1029, 1395
Sau96I	GGNCC	4 cut(s)	190, 920, 1221, 1501
SchI	GAGTC	4 cut(s)	31, 493, 730, 1103
SduI	GDGCHC	1 cut(s)	56
SfaNI	GCATC	2 cut(s)	74, 1528
SfcI	CTRYAG	1 cut(s)	740
Sfr274I	CTCGAG	1 cut(s)	1527
SfuI	TTCGAA	2 cut(s)	547, 1483
SinI	GGWCC	2 cut(s)	190, 920
SlaI	CTCGAG	1 cut(s)	1527
SmlI	CTYRAG	3 cut(s)	1091, 1514, 1527
SmoI	CTYRAG	3 cut(s)	1091, 1514, 1527
SphI	GCATGC	1 cut(s)	1040
Sse9I	AATT	7 cut(s)	59, 265, 926, 972, 1173, 1188, 1274
SsiI	CCGC	2 cut(s)	1106, 1324
SspMI	CTAG	4 cut(s)	21, 33, 200, 779
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	2 cut(s)	86, 1051
TaqI	TCGA	7 cut(s)	211, 547, 633, 835, 1353, 1483, 1528
TasI	AATT	7 cut(s)	59, 265, 926, 972, 1173, 1188, 1274
TatI	WGTACW	1 cut(s)	312
TfiI	GAWTC	4 cut(s)	574, 652, 999, 1367
Tru1I	TTAA	3 cut(s)	891, 1146, 1497
Tru9I	TTAA	3 cut(s)	891, 1146, 1497
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	3 cut(s)	10, 1261, 1427
TseI	GCWGC	6 cut(s)	236, 290, 293, 321, 533, 839
Tsp45I	GTSAC	3 cut(s)	10, 1261, 1427
TspDTI	ATGAA	6 cut(s)	300, 725, 1224, 1235, 1506, 1523
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	190, 920
XagI	CCTNNNNNAGG	1 cut(s)	941
XapI	RAATTY	3 cut(s)	926, 1188, 1274
XceI	RCATGY	1 cut(s)	1040
XhoI	CTCGAG	1 cut(s)	1527
XmiI	GTMKAC	1 cut(s)	1533
XmnI	GAANNNNTTC	1 cut(s)	1479
XspI	CTAG	4 cut(s)	21, 33, 200, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.