Rh2AG006700

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001457
Physical Location & Seq
Forward (+)
620912 .. 622703
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG006700.1

Sequence Viewer

Length: 507 bp
ATGGTGGTTGCCAGTTCTAATCCGCACCACAGGGAAATAAGTATCAGGAAGAGGATTGCGAGCATATTCAATAAACGAGAAGATGATTTTCCTTCTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGATATGACGTTTAACTTGATCGAAGGAATAGATGTCCCTGCTATTGAAGCCAAAATTGCACAGTACCAGGAAGAAAATGCTGAACAAATAATGATTAATAGAGCCCGCAAGGCACTGAACCAAGGCTTTCAAGCAGGATTTGGTACTGGTATGCAGGGGCAATATGCACCTACAATTTCTGGACAACCACGACCAGTGGGCATGGGAGGCCCGCAACCACTGCCACTCGGAGGGGTGCATGATATGCATGGATATGATGATGAAGAAATGATGCAGCTGCGAGCAGAGAGAGGTCCAAGGGCAGGAGGGTGGAGTCCAATGATAAGCAGGAAGAGGGCACTTGAAGAAGCCTTCAGTAGCATTTGGATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

168

Amino Acids

18.88

Weight (kDa)

5.26

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAT1 PF06391 11 - 83 1.5e-30 CDK-activating kinase assembly factor MAT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 238, 344
AcuI CTGAAG 1 cut(s) 469
AfaI GTAC 2 cut(s) 197, 277
AfiI CCNNNNNNNGG 2 cut(s) 362, 434
AgsI TTSAA 4 cut(s) 70, 179, 263, 476
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 409
AluI AGCT 1 cut(s) 409
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 2 cut(s) 406, 409
AseI ATTAAT 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 341, 425
AvaII GGWCC 1 cut(s) 425
BaeGI GKGCMC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 238
BbvI GCAGC 2 cut(s) 396, 418
BciT130I CCWGG 1 cut(s) 200
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 2 cut(s) 407, 410
BlsI GCNGC 2 cut(s) 408, 411
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 425
BmgT120I GGNCC 2 cut(s) 341, 425
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 393
BsaJI CCNNGG 2 cut(s) 253, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 434
Bse1I ACTGG 3 cut(s) 12, 283, 326
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 253, 428
BseLI CCNNNNNNNGG 2 cut(s) 362, 434
BseNI ACTGG 3 cut(s) 12, 283, 326
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 396, 418
BshFI GGCC 1 cut(s) 342
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 362, 434
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 238, 472
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 3 cut(s) 23, 238, 344
BspANI GGCC 1 cut(s) 342
BsrI ACTGG 3 cut(s) 12, 283, 326
BssECI CCNNGG 2 cut(s) 253, 428
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 253, 428
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 44, 458
BstAPI GCANNNNNTGC 2 cut(s) 352, 376
BstC8I GCNNGC 4 cut(s) 61, 238, 344, 414
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 6 cut(s) 179, 188, 242, 339, 352, 376
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 396, 418
BsuRI GGCC 1 cut(s) 342
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 3 cut(s) 245, 333, 350
Cac8I GCNNGC 4 cut(s) 61, 238, 344, 414
Cfr13I GGNCC 2 cut(s) 341, 425
Csp6I GTAC 2 cut(s) 196, 276
CviAII CATG 3 cut(s) 334, 371, 380
CviJI RGCY 6 cut(s) 182, 236, 258, 342, 409, 482
CviKI_1 RGCY 6 cut(s) 182, 236, 258, 342, 409, 482
CviQI GTAC 2 cut(s) 196, 276
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 44, 458
EarI CTCTTC 2 cut(s) 44, 458
Eco130I CCWWGG 2 cut(s) 253, 428
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 469
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 253, 428
EcoT22I ATGCAT 1 cut(s) 381
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 253, 428
FaeI CATG 3 cut(s) 337, 374, 383
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 333, 370, 379
FauI CCCGC 2 cut(s) 245, 351
Fnu4HI GCNGC 2 cut(s) 407, 410
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 2 cut(s) 407, 410
GluI GCNGC 2 cut(s) 407, 410
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 3 cut(s) 337, 374, 383
HinfI GANTC 1 cut(s) 445
Hpy188I TCNGA 1 cut(s) 362
Hpy188III TCNNGA 2 cut(s) 46, 312
HpyAV CCTTC 3 cut(s) 102, 149, 493
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 191, 286, 299, 370, 379, 406
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 188, 242, 339, 352, 376
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 337, 374, 383
Kzo9I GATC 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 396, 418
LweI GCATC 1 cut(s) 393
MaeII ACGT 1 cut(s) 140
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 6 cut(s) 61, 92, 215, 407, 475, 488
MhlI GDGCHC 2 cut(s) 238, 472
MluCI AATT 2 cut(s) 186, 306
MlyI GAGTC 1 cut(s) 454
MnlI CCTC 8 cut(s) 45, 115, 124, 332, 356, 416, 431, 459
Mph1103I ATGCAT 1 cut(s) 381
MseI TTAA 2 cut(s) 144, 228
MslI CAYNNNNRTG 1 cut(s) 384
MspA1I CMGCKG 1 cut(s) 409
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 6 cut(s) 179, 188, 242, 339, 352, 376
NdeII GATC 1 cut(s) 150
NlaIII CATG 3 cut(s) 337, 374, 383
NsiI ATGCAT 1 cut(s) 381
PkrI GCNGC 2 cut(s) 408, 411
PleI GAGTC 1 cut(s) 453
PpsI GAGTC 1 cut(s) 453
PshBI ATTAAT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 341, 425
PvuII CAGCTG 1 cut(s) 409
RsaI GTAC 2 cut(s) 197, 277
RsaNI GTAC 2 cut(s) 196, 276
RseI CAYNNNNRTG 1 cut(s) 384
SaqAI TTAA 2 cut(s) 144, 228
SatI GCNGC 2 cut(s) 407, 410
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 341, 425
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 238, 472
SetI ASST 4 cut(s) 143, 304, 411, 427
SfaNI GCATC 1 cut(s) 393
SinI GGWCC 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 384
Sse9I AATT 2 cut(s) 186, 306
SsiI CCGC 3 cut(s) 23, 238, 344
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 253, 428
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 186, 306
Tru1I TTAA 2 cut(s) 144, 228
Tru9I TTAA 2 cut(s) 144, 228
TscAI CASTG 3 cut(s) 252, 333, 357
TseI GCWGC 2 cut(s) 406, 409
TspDTI ATGAA 2 cut(s) 408, 492
TspRI CASTG 3 cut(s) 252, 333, 357
VpaK11BI GGWCC 1 cut(s) 425
VspI ATTAAT 1 cut(s) 228
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.