Rorug01G0458200

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001457
Physical Location & Seq
Forward (+)
55249900 .. 55251799
1900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0458200.1

Sequence Viewer

Length: 930 bp
ATGGAGGAGTTGGGTTCTATATGGACTACTACATATCAAGAGAGCACTGACGAGTTAAAGAACGAGCTTATGTACTCCAGTCTTGAACTTGAATCAGTAAAATGCAAAGTTACCGAGAGTCAAGAAAATGTGACCAACTTGCTCAATCTGTTAGAGGTTGCATACAAAGAAAGAGATGAAGCCAGAGACCAGTTGAAGAAAATCTTTGAGAAGATGAACCCCAATTGTACTCCAATTGATCAACTGCCAAATCATGTAGTCCAGTCTGTTAGCCCCCAAATTTTGATGCCGACGACAAAAGAAAACTTAAGCTTAACTGAATCCAACAGTCCCTCTTCTGTTGATTCCTTATTCGATCATGCAGTTTCTTCACCAGAGTTTCCAAGCATCATTATGCCTGATTCAAGCACCATGGGTTTTGTTAATGTGAAGCAGCATAATGCGGTTCAACAATTTAATTTGGGCACTACTAATGTTACCATGAGTGCCCAAACTGATACAGCTTCTGAAATAGTTAACGATTTTGCTAAAGGAAAGACTTTACCTCAGAAAGGGAAACTCATGCAAGCTGTGAAGGAAGCTGGTCCATTGCTTCGGACGCTTCTTATTGCTGGTCCCCCATTGCCCCAGTGGCGAAACCCCCCTCCTCCTTTGCAGCAGCCTTTCAAAATCCCACCCGTTGCTCCGATCAACGGTTGTACTACAGCTTCTCCTCTAAGCTTTAATCAGAAACCATTTGCCATTTCAAATCCTACAACTAGCTATTTCAATGTGGCTCATACATCTTCAGCTGCCAATGCCATGTTGAGTTTCAACACTGTCCTTCCTTCTGCTGGTGTTTCATGCTTCAATAACTCAAGAATGATGGAGACTTCAAACTCTGGTTTCGACCACCAAATCCCATTTGCCAAGCGGCGAAGGCTTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

309

Amino Acids

34.08

Weight (kDa)

5.79

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 14 - 234 1.2e-39 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 443, 913
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 771
AfaI GTAC 3 cut(s) 74, 229, 700
AfiI CCNNNNNNNGG 3 cut(s) 551, 692, 833
AflII CTTAAG 1 cut(s) 307
AluBI AGCT 9 cut(s) 67, 312, 503, 569, 581, 707, 720, 762, 791
AluI AGCT 9 cut(s) 67, 312, 503, 569, 581, 707, 720, 762, 791
Alw21I GWGCWC 1 cut(s) 47
Alw26I GTCTC 2 cut(s) 180, 863
AlwNI CAGNNNCTG 1 cut(s) 506
ApeKI GCWGC 4 cut(s) 433, 655, 658, 791
ApoI RAATTY 1 cut(s) 279
AspS9I GGNCC 2 cut(s) 584, 614
AsuHPI GGTGA 1 cut(s) 363
AvaII GGWCC 2 cut(s) 584, 614
BaeGI GKGCMC 2 cut(s) 467, 490
BarI GAAGNNNNNNTAC 2 cut(s) 691, 723
Bbv12I GWGCWC 1 cut(s) 47
BbvI GCAGC 4 cut(s) 445, 667, 670, 778
BccI CCATC 1 cut(s) 859
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 2 cut(s) 180, 863
BfaI CTAG 1 cut(s) 759
BfmI CTRYAG 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 631
BisI GCNGC 5 cut(s) 434, 656, 659, 792, 914
BlsI GCNGC 5 cut(s) 435, 657, 660, 793, 915
Bme18I GGWCC 2 cut(s) 584, 614
BmgT120I GGNCC 2 cut(s) 584, 614
BmiI GGNNCC 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 276, 396
BmuI ACTGGG 1 cut(s) 622
BpmI CTGGAG 1 cut(s) 61
BpuEI CTTGAG 1 cut(s) 841
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 3 cut(s) 551, 692, 833
Bse1I ACTGG 4 cut(s) 78, 190, 262, 628
Bse3DI GCAATG 2 cut(s) 587, 620
BseDI CCNNGG 1 cut(s) 411
BseLI CCNNNNNNNGG 3 cut(s) 551, 692, 833
BseMI GCAATG 2 cut(s) 587, 620
BseMII CTCAG 1 cut(s) 560
BseNI ACTGG 4 cut(s) 78, 190, 262, 628
BseRI GAGGAG 3 cut(s) 20, 636, 702
BseSI GKGCMC 2 cut(s) 467, 490
BseXI GCAGC 4 cut(s) 445, 667, 670, 778
BsiHKAI GWGCWC 1 cut(s) 47
BslFI GGGAC 2 cut(s) 315, 600
BslI CCNNNNNNNGG 3 cut(s) 551, 692, 833
BsmAI GTCTC 2 cut(s) 180, 863
BsmFI GGGAC 2 cut(s) 315, 600
Bso31I GGTCTC 1 cut(s) 180
Bsp1286I GDGCHC 3 cut(s) 47, 467, 490
Bsp143I GATC 3 cut(s) 238, 355, 687
Bsp19I CCATGG 1 cut(s) 411
BspACI CCGC 2 cut(s) 443, 913
BspCNI CTCAG 1 cut(s) 559
BspLI GGNNCC 1 cut(s) 616
BspTI CTTAAG 1 cut(s) 307
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 587, 620
BsrI ACTGG 4 cut(s) 78, 190, 262, 628
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 3 cut(s) 238, 355, 687
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 329, 695, 820
Bst6I CTCTTC 1 cut(s) 340
BstAFI CTTAAG 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 546, 716
BstDSI CCRYGG 1 cut(s) 411
BstENI CCTNNNNNAGG 1 cut(s) 549
BstKTI GATC 3 cut(s) 241, 358, 690
BstMAI GTCTC 2 cut(s) 180, 863
BstMBI GATC 3 cut(s) 238, 355, 687
BstMWI GCNNNNNNNGC 4 cut(s) 598, 631, 797, 919
BstSFI CTRYAG 1 cut(s) 702
BstSLI GKGCMC 2 cut(s) 467, 490
BstV1I GCAGC 4 cut(s) 445, 667, 670, 778
BtgI CCRYGG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 45, 635, 816
Cac8I GCNNGC 1 cut(s) 567
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 2 cut(s) 584, 614
CseI GACGC 1 cut(s) 607
Csp6I GTAC 3 cut(s) 73, 228, 699
CviAII CATG 7 cut(s) 254, 359, 412, 481, 562, 802, 843
CviQI GTAC 3 cut(s) 73, 228, 699
DdeI CTNAG 2 cut(s) 546, 716
DpnI GATC 3 cut(s) 240, 357, 689
DpnII GATC 3 cut(s) 238, 355, 687
Eam1104I CTCTTC 1 cut(s) 340
EarI CTCTTC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 411
Eco31I GGTCTC 1 cut(s) 180
Eco47I GGWCC 2 cut(s) 584, 614
Eco57I CTGAAG 1 cut(s) 771
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 411
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 7 cut(s) 257, 362, 415, 484, 565, 805, 846
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FaqI GGGAC 2 cut(s) 315, 600
FatI CATG 7 cut(s) 253, 358, 411, 480, 561, 801, 842
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 5 cut(s) 434, 656, 659, 792, 914
Fsp4HI GCNGC 5 cut(s) 434, 656, 659, 792, 914
FspBI CTAG 1 cut(s) 759
GluI GCNGC 5 cut(s) 434, 656, 659, 792, 914
GsuI CTGGAG 1 cut(s) 61
HgaI GACGC 1 cut(s) 607
Hin1II CATG 7 cut(s) 257, 362, 415, 484, 565, 805, 846
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 2 cut(s) 310, 718
HinfI GANTC 5 cut(s) 92, 118, 320, 344, 401
HpaI GTTAAC 1 cut(s) 517
HphI GGTGA 1 cut(s) 363
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 5 cut(s) 508, 549, 597, 687, 729
Hpy188III TCNNGA 4 cut(s) 38, 83, 122, 858
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 4 cut(s) 568, 833, 837, 912
HpyCH4III ACNGT 3 cut(s) 329, 695, 820
HpyCH4V TGCA 5 cut(s) 105, 161, 362, 565, 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 598, 631, 797, 919
HpyF3I CTNAG 2 cut(s) 546, 716
Hsp92II CATG 7 cut(s) 257, 362, 415, 484, 565, 805, 846
Ksp22I TGATCA 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 3 cut(s) 238, 355, 687
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 4 cut(s) 445, 667, 670, 778
LweI GCATC 2 cut(s) 276, 396
MaeI CTAG 1 cut(s) 759
MaeIII GTNAC 3 cut(s) 109, 130, 475
MalI GATC 3 cut(s) 240, 357, 689
MboI GATC 3 cut(s) 238, 355, 687
MboII GAAGA 5 cut(s) 208, 223, 327, 360, 777
MfeI CAATTG 2 cut(s) 223, 234
MhlI GDGCHC 3 cut(s) 47, 467, 490
MluCI AATT 5 cut(s) 223, 234, 279, 452, 457
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 348
MnlI CCTC 6 cut(s) 148, 343, 555, 654, 657, 723
MseI TTAA 7 cut(s) 56, 308, 314, 423, 456, 516, 723
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 791
MspCI CTTAAG 1 cut(s) 307
MunI CAATTG 2 cut(s) 223, 234
MwoI GCNNNNNNNGC 4 cut(s) 598, 631, 797, 919
NcoI CCATGG 1 cut(s) 411
NdeII GATC 3 cut(s) 238, 355, 687
NlaIII CATG 7 cut(s) 257, 362, 415, 484, 565, 805, 846
NlaIV GGNNCC 1 cut(s) 616
NmuCI GTSAC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 92, 320, 344, 401
PkrI GCNGC 5 cut(s) 435, 657, 660, 793, 915
PleI GAGTC 1 cut(s) 126
PpsI GAGTC 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 616
PspPI GGNCC 2 cut(s) 584, 614
PstNI CAGNNNCTG 1 cut(s) 506
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 3 cut(s) 74, 229, 700
RsaNI GTAC 3 cut(s) 73, 228, 699
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 7 cut(s) 56, 308, 314, 423, 456, 516, 723
SatI GCNGC 5 cut(s) 434, 656, 659, 792, 914
Sau3AI GATC 3 cut(s) 238, 355, 687
Sau96I GGNCC 2 cut(s) 584, 614
SchI GAGTC 1 cut(s) 127
SduI GDGCHC 3 cut(s) 47, 467, 490
SfaNI GCATC 2 cut(s) 276, 396
SfcI CTRYAG 1 cut(s) 702
SinI GGWCC 2 cut(s) 584, 614
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 2 cut(s) 307, 856
SmoI CTYRAG 2 cut(s) 307, 856
Sse9I AATT 5 cut(s) 223, 234, 279, 452, 457
SsiI CCGC 2 cut(s) 443, 913
SspMI CTAG 1 cut(s) 759
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 3 cut(s) 329, 695, 820
TaqI TCGA 2 cut(s) 354, 888
TasI AATT 5 cut(s) 223, 234, 279, 452, 457
TatI WGTACW 3 cut(s) 72, 227, 698
TauI GCSGC 1 cut(s) 916
TfiI GAWTC 4 cut(s) 92, 320, 344, 401
Tru1I TTAA 7 cut(s) 56, 308, 314, 423, 456, 516, 723
Tru9I TTAA 7 cut(s) 56, 308, 314, 423, 456, 516, 723
TscAI CASTG 3 cut(s) 52, 635, 823
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 4 cut(s) 433, 655, 658, 791
Tsp45I GTSAC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 192, 230, 831
TspRI CASTG 3 cut(s) 52, 635, 823
Vha464I CTTAAG 1 cut(s) 307
VpaK11BI GGWCC 2 cut(s) 584, 614
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 1 cut(s) 279
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XspI CTAG 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.