Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001457

Physical Location & Seq

Genomic Coordinates Forward (+)

304259 .. 306784

Gene Structure 2526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGTAGTTGGCAGCTCTAATTCCCACAACAGGGAGATAAGTATCAGGAGACGGATCGCAAGCATATTCAATAAACGAGAAGACGATTTTCCTTCCTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGATATGACGTTTAACTTGATCGAAGGAATAGATGTCCCTGCTATCGAAGCCAAAATTGCACAGTACCAGGAAGAAAATGCTGAACAAATAATGATTAATAGAGCCCGCAAGGCTGAAGAACTAGCCGCAGCTCTAGCAGCAAGCAAGGGTCAACCTGTACAAAATGATACTGATTTCGCACTGAACCAAGGCTCTCAAGCAGGATTTGGTACTAGCATGCAGGGGCAATATGCACCTACAATTTCGGGTCAACCTCGACCTTTGGGCATGGGCGGCCCCCAACCACTGCCACTCGGAGGGATGCATGATATGCATGGATATGATGATGAAGAAATGATGCAGCTGCGAGCAGAGAGAGGTCCGAGGGCAGGAGGATGGAGTCCAAAGATAAGCAGGAAGAGGGCCCTTGAAGAAGCCTTCAGTAGCATTTGGGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

MAT1

Protein Analysis

191

Amino Acids

21.09

Weight (kDa)

4.97

Isoelectric Point (pI)

63.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAT1	PF06391	10 - 88	2.5e-31	CDK-activating kinase assembly factor MAT1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820
fragaria_vesca	FvH4_1g00560 FvH4_1g00560 FvH4_1g00560
malus_domestica	MD02G1004700.v1.1 MD15G1148500.v1.1
prunus_persica	Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1
pyrus_communis	pycom15g13280
rosa_chinensis	RchiOBHm_Chr2g0085191
rosa_laevigata	RLG00000015665
rosa_multiflora	Rmu_sc0008647.1_g000004 Rmu_sc0011989.1_g000004
rosa_rugosa	Rorug01G0011700 Rorug01G0458200 Rorug01G0458300 Rorug01G0458400 Rorug01G0458400
rosa_samantha	Rh1BG016600 Rh2AG006700 Rh2BG007400 Rh2CG008200 Rh2DG008400
rosa_wichuraiana	Rw2G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	238, 258, 405
AclWI	GGATC	1 cut(s)	62
AcuI	CTGAAG	2 cut(s)	267, 535
AfaI	GTAC	3 cut(s)	197, 291, 343
AfiI	CCNNNNNNNGG	4 cut(s)	30, 31, 428, 500
AgsI	TTSAA	2 cut(s)	70, 542
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	15, 263, 475
AluI	AGCT	3 cut(s)	15, 263, 475
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	1 cut(s)	62
AoxI	GGCC	2 cut(s)	406, 534
ApaI	GGGCCC	1 cut(s)	538
ApeKI	GCWGC	5 cut(s)	12, 260, 269, 472, 475
AseI	ATTAAT	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	407, 491, 534, 535
AvaII	GGWCC	1 cut(s)	491
BaeGI	GKGCMC	1 cut(s)	538
BanII	GRGCYC	2 cut(s)	238, 538
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	24, 272, 281, 462, 484
BccI	CCATC	1 cut(s)	501
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	3 cut(s)	254, 266, 345
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	7 cut(s)	13, 258, 261, 270, 406, 473, 476
BlsI	GCNGC	7 cut(s)	14, 259, 262, 271, 407, 474, 477
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	4 cut(s)	407, 491, 534, 535
BmiI	GGNNCC	2 cut(s)	409, 536
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	423, 459
BpiI	GAAGAC	1 cut(s)	87
BpuEI	CTTGAG	2 cut(s)	118, 312
BsaBI	GATNNNNATC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	319, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 31, 428, 500
Bse8I	GATNNNNATC	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	2 cut(s)	319, 494
BseGI	GGATG	2 cut(s)	438, 512
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	4 cut(s)	30, 31, 428, 500
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	24, 272, 281, 462, 484
BshFI	GGCC	2 cut(s)	408, 536
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	4 cut(s)	30, 31, 428, 500
BsmAI	GTCTC	1 cut(s)	43
BsmBI	CGTCTC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	408, 536
Bsp120I	GGGCCC	1 cut(s)	534
Bsp1286I	GDGCHC	2 cut(s)	238, 538
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	54, 150
BspACI	CCGC	3 cut(s)	238, 258, 405
BspANI	GGCC	2 cut(s)	408, 536
BspLI	GGNNCC	2 cut(s)	409, 536
BspPI	GGATC	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	319, 494
BssMI	GATC	2 cut(s)	54, 150
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	442
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	5 cut(s)	61, 238, 274, 350, 480
BstF5I	GGATG	2 cut(s)	438, 512
BstKTI	GATC	2 cut(s)	57, 153
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	2 cut(s)	54, 150
BstMWI	GCNNNNNNNGC	7 cut(s)	179, 188, 242, 266, 269, 405, 442
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	198
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	5 cut(s)	24, 272, 281, 462, 484
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	408, 536
BtsCI	GGATG	2 cut(s)	438, 512
BtsI	GCAGTG	1 cut(s)	416
BtsIMutI	CAGTG	2 cut(s)	311, 416
Cac8I	GCNNGC	5 cut(s)	61, 238, 274, 350, 480
Cfr13I	GGNCC	4 cut(s)	407, 491, 534, 535
Csp6I	GTAC	3 cut(s)	196, 290, 342
CviAII	CATG	4 cut(s)	349, 400, 437, 446
CviQI	GTAC	3 cut(s)	196, 290, 342
DpnI	GATC	2 cut(s)	56, 152
DpnII	GATC	2 cut(s)	54, 150
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	2 cut(s)	238, 538
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	2 cut(s)	267, 535
EcoO109I	RGGNCCY	2 cut(s)	534, 535
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	319
EcoT22I	ATGCAT	2 cut(s)	438, 447
EcoT38I	GRGCYC	2 cut(s)	238, 538
ErhI	CCWWGG	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	4 cut(s)	352, 403, 440, 449
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	348, 399, 436, 445
FauI	CCCGC	1 cut(s)	245
Fnu4HI	GCNGC	7 cut(s)	13, 258, 261, 270, 406, 473, 476
FokI	GGATG	2 cut(s)	445, 519
FriOI	GRGCYC	2 cut(s)	238, 538
Fsp4HI	GCNGC	7 cut(s)	13, 258, 261, 270, 406, 473, 476
FspBI	CTAG	3 cut(s)	254, 266, 345
GluI	GCNGC	7 cut(s)	13, 258, 261, 270, 406, 473, 476
HaeIII	GGCC	2 cut(s)	408, 536
Hin1II	CATG	4 cut(s)	352, 403, 440, 449
HincII	GTYRAC	2 cut(s)	284, 383
HindII	GTYRAC	2 cut(s)	284, 383
HinfI	GANTC	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	284, 383
Hpy188I	TCNGA	2 cut(s)	428, 495
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	284, 383
HpyAV	CCTTC	3 cut(s)	102, 149, 559
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	6 cut(s)	191, 352, 365, 436, 445, 472
HpyF10VI	GCNNNNNNNGC	7 cut(s)	179, 188, 242, 266, 269, 405, 442
HpySE526I	ACGT	1 cut(s)	140
Hsp92II	CATG	4 cut(s)	352, 403, 440, 449
Kzo9I	GATC	2 cut(s)	54, 150
Lsp1109I	GCAGC	5 cut(s)	24, 272, 281, 462, 484
LweI	GCATC	2 cut(s)	423, 459
MaeI	CTAG	3 cut(s)	254, 266, 345
MaeII	ACGT	1 cut(s)	140
MalI	GATC	2 cut(s)	56, 152
MboI	GATC	2 cut(s)	54, 150
MboII	GAAGA	6 cut(s)	92, 215, 260, 473, 541, 554
MhlI	GDGCHC	2 cut(s)	238, 538
MluCI	AATT	3 cut(s)	19, 186, 372
MlyI	GAGTC	1 cut(s)	520
MnlI	CCTC	8 cut(s)	115, 124, 396, 422, 482, 489, 497, 525
Mph1103I	ATGCAT	2 cut(s)	438, 447
MseI	TTAA	2 cut(s)	144, 228
MslI	CAYNNNNRTG	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	475
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	7 cut(s)	179, 188, 242, 266, 269, 405, 442
NdeII	GATC	2 cut(s)	54, 150
NlaIII	CATG	4 cut(s)	352, 403, 440, 449
NlaIV	GGNNCC	2 cut(s)	409, 536
NsiI	ATGCAT	2 cut(s)	438, 447
NspI	RCATGY	1 cut(s)	352
PaeI	GCATGC	1 cut(s)	352
PkrI	GCNGC	7 cut(s)	14, 259, 262, 271, 407, 474, 477
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PshBI	ATTAAT	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	409, 536
PspOMI	GGGCCC	1 cut(s)	534
PspPI	GGNCC	4 cut(s)	407, 491, 534, 535
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	3 cut(s)	197, 291, 343
RsaNI	GTAC	3 cut(s)	196, 290, 342
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	2 cut(s)	144, 228
SatI	GCNGC	7 cut(s)	13, 258, 261, 270, 406, 473, 476
Sau3AI	GATC	2 cut(s)	54, 150
Sau96I	GGNCC	4 cut(s)	407, 491, 534, 535
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	238, 538
SetI	ASST	9 cut(s)	17, 143, 265, 289, 370, 388, 394, 477, 493
SfaNI	GCATC	2 cut(s)	423, 459
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	1 cut(s)	450
SmlI	CTYRAG	2 cut(s)	97, 327
SmoI	CTYRAG	2 cut(s)	97, 327
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	3 cut(s)	19, 186, 372
SsiI	CCGC	3 cut(s)	238, 258, 405
SspMI	CTAG	3 cut(s)	254, 266, 345
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	3 cut(s)	153, 177, 388
TasI	AATT	3 cut(s)	19, 186, 372
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	2 cut(s)	260, 408
Tru1I	TTAA	2 cut(s)	144, 228
Tru9I	TTAA	2 cut(s)	144, 228
TscAI	CASTG	2 cut(s)	318, 423
TseI	GCWGC	5 cut(s)	12, 260, 269, 472, 475
TspDTI	ATGAA	2 cut(s)	474, 558
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	318, 423
VpaK11BI	GGWCC	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	228
XceI	RCATGY	1 cut(s)	352
XspI	CTAG	3 cut(s)	254, 266, 345
Zsp2I	ATGCAT	2 cut(s)	438, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.