RchiOBHm_Chr2g0085191

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001457
Physical Location & Seq
Forward (+)
727452 .. 730218
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46075

Sequence Viewer

Length: 573 bp
ATGGTGGTTGCCAGTTCTAATCCGCACCACAGGGAAATAAGTATCAGGAAGAGGATTGCGAGCATATTCAATAAACGAGAAGATGATTTTCCTTCTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGATATGACGTTTAACTTGATCGAAGGAATAGATGTCCCTGCTATTGAAGCCAAAATTGCACAGTACCAGGAAGAAAATGCTGAACAAATAATGATTAATAGAGCCCGCAAGGCTGAAGAACTAGCTGCAGCTCTAGCAGCAAGCAAGGGTCATCCTGTACAAAATGATACTGATGTGGCACTGAACCAAGGCTTTCAAGCAGGATTTGGTACTGGTATGCAGGGGCAATATGCACCTACAATTTCTGGACAACCACGACCAGTAGGCATGGGAGGCCCGCAACCACTGCCACTCGGAGGGGTGCATGATATGCATGGATATGATGATGAAGAAATGATGCAGCTGCGAGCAGAGAGAGGTCCAAGGGCAGGAGGGTGGAGTCCAATGATAAGCAGGAAGAGGGCACTTGAAGAAGCCTTCAGTAGCATTTGGATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

190

Amino Acids

21.07

Weight (kDa)

5.05

Isoelectric Point (pI)

53.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAT1 PF06391 11 - 87 1.1e-31 CDK-activating kinase assembly factor MAT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 23, 238, 410
AcuI CTGAAG 2 cut(s) 267, 535
AfaI GTAC 3 cut(s) 197, 291, 343
AfiI CCNNNNNNNGG 2 cut(s) 428, 500
AgsI TTSAA 4 cut(s) 70, 179, 329, 542
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 3 cut(s) 257, 263, 475
AluI AGCT 3 cut(s) 257, 263, 475
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 5 cut(s) 257, 260, 269, 472, 475
AseI ATTAAT 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 407, 491
AvaII GGWCC 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 538
BaeI ACNNNNGTAYC 2 cut(s) 291, 324
BanII GRGCYC 1 cut(s) 238
BbvI GCAGC 5 cut(s) 244, 272, 281, 462, 484
BciT130I CCWGG 1 cut(s) 200
BfaI CTAG 2 cut(s) 254, 266
BfmI CTRYAG 1 cut(s) 258
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 5 cut(s) 258, 261, 270, 473, 476
BlsI GCNGC 5 cut(s) 259, 262, 271, 474, 477
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 2 cut(s) 407, 491
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 459
BsaJI CCNNGG 2 cut(s) 319, 494
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 500
Bse1I ACTGG 3 cut(s) 12, 349, 392
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 319, 494
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 428, 500
BseNI ACTGG 3 cut(s) 12, 349, 392
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 5 cut(s) 244, 272, 281, 462, 484
BshFI GGCC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 428, 500
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 1 cut(s) 408
Bsp1286I GDGCHC 2 cut(s) 238, 538
Bsp1407I TGTACA 1 cut(s) 289
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 3 cut(s) 23, 238, 410
BspANI GGCC 1 cut(s) 408
BspMAI CTGCAG 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 289
BsrI ACTGG 3 cut(s) 12, 349, 392
BssECI CCNNGG 2 cut(s) 319, 494
BssMI GATC 1 cut(s) 150
BssT1I CCWWGG 2 cut(s) 319, 494
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 44, 524
BstAPI GCANNNNNTGC 2 cut(s) 418, 442
BstAUI TGTACA 1 cut(s) 289
BstC8I GCNNGC 5 cut(s) 61, 238, 274, 410, 480
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 8 cut(s) 179, 188, 242, 266, 269, 405, 418, 442
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 1 cut(s) 258
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 5 cut(s) 244, 272, 281, 462, 484
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 283
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 2 cut(s) 311, 416
Cac8I GCNNGC 5 cut(s) 61, 238, 274, 410, 480
Cfr13I GGNCC 2 cut(s) 407, 491
Csp6I GTAC 3 cut(s) 196, 290, 342
CviAII CATG 3 cut(s) 400, 437, 446
CviJI RGCY 9 cut(s) 182, 236, 245, 257, 263, 324, 408, 475, 548
CviKI_1 RGCY 9 cut(s) 182, 236, 245, 257, 263, 324, 408, 475, 548
CviQI GTAC 3 cut(s) 196, 290, 342
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eam1104I CTCTTC 2 cut(s) 44, 524
EarI CTCTTC 2 cut(s) 44, 524
Eco130I CCWWGG 2 cut(s) 319, 494
Eco24I GRGCYC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 2 cut(s) 267, 535
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 319, 494
EcoT22I ATGCAT 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 238
ErhI CCWWGG 2 cut(s) 319, 494
FaeI CATG 3 cut(s) 403, 440, 449
FaqI GGGAC 1 cut(s) 152
FatI CATG 3 cut(s) 399, 436, 445
FauI CCCGC 2 cut(s) 245, 417
Fnu4HI GCNGC 5 cut(s) 258, 261, 270, 473, 476
FokI GGATG 1 cut(s) 270
FriOI GRGCYC 1 cut(s) 238
Fsp4HI GCNGC 5 cut(s) 258, 261, 270, 473, 476
FspBI CTAG 2 cut(s) 254, 266
GluI GCNGC 5 cut(s) 258, 261, 270, 473, 476
HaeIII GGCC 1 cut(s) 408
Hin1II CATG 3 cut(s) 403, 440, 449
HinfI GANTC 1 cut(s) 511
Hpy188I TCNGA 1 cut(s) 428
Hpy188III TCNNGA 2 cut(s) 46, 378
HpyAV CCTTC 3 cut(s) 102, 149, 559
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 7 cut(s) 191, 260, 352, 365, 436, 445, 472
HpyF10VI GCNNNNNNNGC 8 cut(s) 179, 188, 242, 266, 269, 405, 418, 442
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 3 cut(s) 403, 440, 449
Kzo9I GATC 1 cut(s) 150
Lsp1109I GCAGC 5 cut(s) 244, 272, 281, 462, 484
LweI GCATC 1 cut(s) 459
MaeI CTAG 2 cut(s) 254, 266
MaeII ACGT 1 cut(s) 140
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 7 cut(s) 61, 92, 215, 260, 473, 541, 554
MhlI GDGCHC 2 cut(s) 238, 538
MluCI AATT 2 cut(s) 186, 372
MlyI GAGTC 1 cut(s) 520
MnlI CCTC 8 cut(s) 45, 115, 124, 398, 422, 482, 497, 525
Mph1103I ATGCAT 1 cut(s) 447
MseI TTAA 2 cut(s) 144, 228
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 1 cut(s) 475
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 8 cut(s) 179, 188, 242, 266, 269, 405, 418, 442
NdeII GATC 1 cut(s) 150
NlaIII CATG 3 cut(s) 403, 440, 449
NsiI ATGCAT 1 cut(s) 447
PkrI GCNGC 5 cut(s) 259, 262, 271, 474, 477
PleI GAGTC 1 cut(s) 519
PpsI GAGTC 1 cut(s) 519
PshBI ATTAAT 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspPI GGNCC 2 cut(s) 407, 491
PstI CTGCAG 1 cut(s) 262
PvuII CAGCTG 1 cut(s) 475
RsaI GTAC 3 cut(s) 197, 291, 343
RsaNI GTAC 3 cut(s) 196, 290, 342
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 2 cut(s) 144, 228
SatI GCNGC 5 cut(s) 258, 261, 270, 473, 476
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 407, 491
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 238, 538
SetI ASST 6 cut(s) 143, 259, 265, 370, 477, 493
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 491
SmiMI CAYNNNNRTG 1 cut(s) 450
Sse9I AATT 2 cut(s) 186, 372
SsiI CCGC 3 cut(s) 23, 238, 410
SspMI CTAG 2 cut(s) 254, 266
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 2 cut(s) 319, 494
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 186, 372
TatI WGTACW 1 cut(s) 289
Tru1I TTAA 2 cut(s) 144, 228
Tru9I TTAA 2 cut(s) 144, 228
TscAI CASTG 2 cut(s) 318, 423
TseI GCWGC 5 cut(s) 257, 260, 269, 472, 475
TspDTI ATGAA 2 cut(s) 474, 558
TspRI CASTG 2 cut(s) 318, 423
VpaK11BI GGWCC 1 cut(s) 491
VspI ATTAAT 1 cut(s) 228
XspI CTAG 2 cut(s) 254, 266
Zsp2I ATGCAT 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.