RLG00000015665

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001457
Physical Location & Seq
Forward (+)
502050 .. 505489
3440 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015665

Sequence Viewer

Length: 756 bp
ATGGTGTCGAGGCCGATGGAATTGGAAGTGAAGCTATGGCTGAGGCAAGTGGAGCTCCGATCTGCAGGTGCTATGATGATGGGAGGTGCTTGTCGGTTAGCAGATGAGACGGCTTATAGTCTAGAACTTGAGATGCTTTTAACGTTACAGGAGCAAAAGGGGAAAAGGCTTTCAGGGAACAAAATGGTGGTTGCCAGTTCTAATCCGCACCACAGGGAAATAAGTATCAGGAAGAGGATTGCGAGCATATTCAATAAACGAGAAGATGATTTTCCTTCTTTGAGAGAATACAACGATTACTTGGAGGAAGTAGAAGATATGACGTTTAACTTGATCGAAGGAATAGATGTCCCTGCTATTGAAGCCAAAATTGCACAGTACCAGGAAGAAAATGCTGAACAAATAATGATTAATAGAGCCCGCAAGGCCGAAGAACTAGCTGCAGCTCTAGCAGCAAGCAAGGGTCATCCTGTACAAAATGATACTGATGTGGCTCTGAACCAAGGCTTTCAAGCAGGATTTGGTACTGGTATGCAGGGGCAATATGCACCTACAATTTCTGGACAACCACGACCAGTGGGCATGGGAGGCCCGCAACCACTGCCACTCGGAGGAGTGCATGATATGCATGGATATGATGATGAAGAAATGATGCAGCTGCGAGCAGAGAGAGGTCCAAGGGCAGGAGGGTGGAGTCCAATGATAAGCAGGAAGAGGGCACTTGAAGAAGCCTTCAGTAGCATTTGGATTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

252

Amino Acids

27.95

Weight (kDa)

5.28

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAT1 PF06391 72 - 148 2.2e-31 CDK-activating kinase assembly factor MAT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 56
AciI CCGC 3 cut(s) 206, 421, 593
AclI AACGTT 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 718
AfaI GTAC 3 cut(s) 380, 474, 526
AfiI CCNNNNNNNGG 2 cut(s) 611, 683
AgsI TTSAA 4 cut(s) 253, 362, 512, 725
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 5 cut(s) 34, 55, 440, 446, 658
AluI AGCT 5 cut(s) 34, 55, 440, 446, 658
Alw21I GWGCWC 1 cut(s) 57
Alw26I GTCTC 1 cut(s) 101
AoxI GGCC 3 cut(s) 11, 426, 589
ApeKI GCWGC 5 cut(s) 440, 443, 452, 655, 658
AseI ATTAAT 1 cut(s) 411
AspS9I GGNCC 2 cut(s) 590, 674
AvaII GGWCC 1 cut(s) 674
BaeGI GKGCMC 1 cut(s) 721
BaeI ACNNNNGTAYC 2 cut(s) 474, 507
BanII GRGCYC 2 cut(s) 57, 421
Bbv12I GWGCWC 1 cut(s) 57
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 5 cut(s) 427, 455, 464, 645, 667
BccI CCATC 2 cut(s) 10, 73
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 3 cut(s) 122, 437, 449
BfmI CTRYAG 2 cut(s) 63, 441
BfuAI ACCTGC 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 425
BisI GCNGC 5 cut(s) 441, 444, 453, 656, 659
BlsI GCNGC 5 cut(s) 442, 445, 454, 657, 660
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 2 cut(s) 590, 674
BmrFI CCNGG 1 cut(s) 383
BmsI GCATC 2 cut(s) 123, 642
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 502, 677
Bsc4I CCNNNNNNNGG 2 cut(s) 611, 683
Bse1I ACTGG 3 cut(s) 195, 532, 575
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 2 cut(s) 502, 677
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 611, 683
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 3 cut(s) 195, 532, 575
BseRI GAGGAG 1 cut(s) 627
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 5 cut(s) 427, 455, 464, 645, 667
BshFI GGCC 3 cut(s) 13, 428, 591
BsiHKAI GWGCWC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 2 cut(s) 611, 683
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 3 cut(s) 13, 428, 591
Bsp1286I GDGCHC 3 cut(s) 57, 421, 721
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 2 cut(s) 59, 333
BspACI CCGC 3 cut(s) 206, 421, 593
BspANI GGCC 3 cut(s) 13, 428, 591
BspCNI CTCAG 1 cut(s) 33
BspMAI CTGCAG 2 cut(s) 67, 445
BspMI ACCTGC 1 cut(s) 56
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 3 cut(s) 195, 532, 575
BssECI CCNNGG 2 cut(s) 502, 677
BssMI GATC 2 cut(s) 59, 333
BssT1I CCWWGG 2 cut(s) 502, 677
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 378
Bst6I CTCTTC 2 cut(s) 227, 707
BstAPI GCANNNNNTGC 2 cut(s) 601, 625
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 5 cut(s) 244, 421, 457, 593, 663
BstDEI CTNAG 1 cut(s) 41
BstF5I GGATG 1 cut(s) 466
BstKTI GATC 2 cut(s) 62, 336
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 2 cut(s) 59, 333
BstMWI GCNNNNNNNGC 9 cut(s) 52, 362, 371, 425, 449, 452, 588, 601, 625
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstSFI CTRYAG 2 cut(s) 63, 441
BstSLI GKGCMC 1 cut(s) 721
BstV1I GCAGC 5 cut(s) 427, 455, 464, 645, 667
BsuRI GGCC 3 cut(s) 13, 428, 591
BtsCI GGATG 1 cut(s) 466
BtsI GCAGTG 1 cut(s) 599
BtsIMutI CAGTG 2 cut(s) 582, 599
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 5 cut(s) 244, 421, 457, 593, 663
Cfr13I GGNCC 2 cut(s) 590, 674
Csp6I GTAC 3 cut(s) 379, 473, 525
CviAII CATG 3 cut(s) 583, 620, 629
CviQI GTAC 3 cut(s) 379, 473, 525
DdeI CTNAG 1 cut(s) 41
DpnI GATC 2 cut(s) 61, 335
DpnII GATC 2 cut(s) 59, 333
Eam1104I CTCTTC 2 cut(s) 227, 707
EarI CTCTTC 2 cut(s) 227, 707
Ecl136II GAGCTC 1 cut(s) 55
Eco130I CCWWGG 2 cut(s) 502, 677
Eco24I GRGCYC 2 cut(s) 57, 421
Eco47I GGWCC 1 cut(s) 674
Eco53kI GAGCTC 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 718
EcoICRI GAGCTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 502, 677
EcoT22I ATGCAT 1 cut(s) 630
EcoT38I GRGCYC 2 cut(s) 57, 421
ErhI CCWWGG 2 cut(s) 502, 677
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 3 cut(s) 586, 623, 632
FaqI GGGAC 1 cut(s) 335
FatI CATG 3 cut(s) 582, 619, 628
FauI CCCGC 2 cut(s) 428, 600
Fnu4HI GCNGC 5 cut(s) 441, 444, 453, 656, 659
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 57, 421
Fsp4HI GCNGC 5 cut(s) 441, 444, 453, 656, 659
FspBI CTAG 3 cut(s) 122, 437, 449
GluI GCNGC 5 cut(s) 441, 444, 453, 656, 659
HaeIII GGCC 3 cut(s) 13, 428, 591
Hin1II CATG 3 cut(s) 586, 623, 632
HinfI GANTC 1 cut(s) 694
Hpy188I TCNGA 3 cut(s) 59, 498, 611
Hpy188III TCNNGA 3 cut(s) 122, 229, 561
HpyAV CCTTC 3 cut(s) 285, 332, 742
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 2 cut(s) 143, 323
HpyCH4V TGCA 8 cut(s) 65, 374, 443, 535, 548, 619, 628, 655
HpyF10VI GCNNNNNNNGC 9 cut(s) 52, 362, 371, 425, 449, 452, 588, 601, 625
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 2 cut(s) 143, 323
Hsp92II CATG 3 cut(s) 586, 623, 632
Kzo9I GATC 2 cut(s) 59, 333
LmnI GCTCC 3 cut(s) 52, 60, 151
Lsp1109I GCAGC 5 cut(s) 427, 455, 464, 645, 667
LweI GCATC 2 cut(s) 123, 642
MaeI CTAG 3 cut(s) 122, 437, 449
MaeII ACGT 2 cut(s) 143, 323
MaeIII GTNAC 1 cut(s) 144
MalI GATC 2 cut(s) 61, 335
MboI GATC 2 cut(s) 59, 333
MboII GAAGA 8 cut(s) 244, 275, 326, 398, 443, 656, 724, 737
MhlI GDGCHC 3 cut(s) 57, 421, 721
MluCI AATT 3 cut(s) 20, 369, 555
MlyI GAGTC 1 cut(s) 703
Mph1103I ATGCAT 1 cut(s) 630
MseI TTAA 3 cut(s) 140, 327, 411
MslI CAYNNNNRTG 1 cut(s) 633
MspA1I CMGCKG 1 cut(s) 658
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MwoI GCNNNNNNNGC 9 cut(s) 52, 362, 371, 425, 449, 452, 588, 601, 625
NdeII GATC 2 cut(s) 59, 333
NlaIII CATG 3 cut(s) 586, 623, 632
NsiI ATGCAT 1 cut(s) 630
PaqCI CACCTGC 1 cut(s) 56
PkrI GCNGC 5 cut(s) 442, 445, 454, 657, 660
PleI GAGTC 1 cut(s) 702
PpsI GAGTC 1 cut(s) 702
PshBI ATTAAT 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspPI GGNCC 2 cut(s) 590, 674
PstI CTGCAG 2 cut(s) 67, 445
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 3 cut(s) 380, 474, 526
RsaNI GTAC 3 cut(s) 379, 473, 525
RseI CAYNNNNRTG 1 cut(s) 633
SacI GAGCTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 140, 327, 411
SatI GCNGC 5 cut(s) 441, 444, 453, 656, 659
Sau3AI GATC 2 cut(s) 59, 333
Sau96I GGNCC 2 cut(s) 590, 674
SchI GAGTC 1 cut(s) 703
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 3 cut(s) 57, 421, 721
SfaNI GCATC 2 cut(s) 123, 642
SfcI CTRYAG 2 cut(s) 63, 441
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 3 cut(s) 20, 369, 555
SsiI CCGC 3 cut(s) 206, 421, 593
SspMI CTAG 3 cut(s) 122, 437, 449
SstI GAGCTC 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 381
StyI CCWWGG 2 cut(s) 502, 677
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 2 cut(s) 146, 326
TaqI TCGA 2 cut(s) 8, 336
TasI AATT 3 cut(s) 20, 369, 555
TatI WGTACW 1 cut(s) 472
Tru1I TTAA 3 cut(s) 140, 327, 411
Tru9I TTAA 3 cut(s) 140, 327, 411
TscAI CASTG 2 cut(s) 582, 606
TseI GCWGC 5 cut(s) 440, 443, 452, 655, 658
TspDTI ATGAA 2 cut(s) 657, 741
TspRI CASTG 2 cut(s) 582, 606
VpaK11BI GGWCC 1 cut(s) 674
VspI ATTAAT 1 cut(s) 411
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 3 cut(s) 122, 437, 449
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.