AT4G30820

cyclin-dependent kinase-activating kinase assembly factor-related CDK-activating kinase assembly factor-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001457
Physical Location & Seq
Forward (+)
15006485 .. 15008650
2166 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G30820.19

Sequence Viewer

Length: 537 bp
ATGGTGATGGTGTCTAATTCTACCCATCAAAATAAGGAAATACATGTCAGAAGGAGAATCTCTGAGATATACAATAGACGGGAAGAGGAGTTTCCATCACTTAAAGACTACAATGACTACTTGGAAGAAGTGGAGTGCATGGTATTCGACTTGATAGATGGAATCAATGTCGAGGCGATTGAGCAGAAGATTAAGAGATATTCTAAGGAGAATGCTGAACAGATAATGATTAATAGAGCTCGTAAGGCAGAAGAATTGACTGCAGCCTTGGCAGCTTGCAAGGCCAAACCCCCACAGACAGATGCTGACACGTCGTCGAACCATGGGGTCACGGCTGGAACTACATATGGTCAGGCTTCACGACCAACGGGAATGGGCCCACAACCTGTACCTATAGTAGGTGGAGCAGAGCGTCAACATTACGCTATGGAAGACGAAGCGACGAGGAGGATGAAAGCAGAGAGAGCTGGAGGATTTTCTTTAGAGATAAGCAAGAGGAGGGCTTTGGAAGAAGCATTTGCAAGCATTTGGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

5.88

Isoelectric Point (pI)

68.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAT1 PF06391 2 - 75 3.7e-22 CDK-activating kinase assembly factor MAT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 398
AflIII ACRYGT 2 cut(s) 43, 309
AhdI GACNNNNNGTC 1 cut(s) 313
AjiI CACGTC 1 cut(s) 312
AluBI AGCT 3 cut(s) 239, 275, 467
AluI AGCT 3 cut(s) 239, 275, 467
Alw21I GWGCWC 1 cut(s) 241
AlwNI CAGNNNCTG 1 cut(s) 305
AoxI GGCC 2 cut(s) 282, 376
ApaI GGGCCC 1 cut(s) 380
ApeKI GCWGC 2 cut(s) 263, 272
AseI ATTAAT 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 376, 377
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 241, 380
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 275, 284
BccI CCATC 3 cut(s) 33, 103, 152
BceAI ACGGC 1 cut(s) 348
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BfmI CTRYAG 2 cut(s) 261, 393
BisI GCNGC 2 cut(s) 264, 273
BlsI GCNGC 2 cut(s) 265, 274
BmeRI GACNNNNNGTC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 376, 377
BmiI GGNNCC 1 cut(s) 378
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 438
BpmI CTGGAG 1 cut(s) 489
BsaJI CCNNGG 2 cut(s) 267, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 267, 322
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMII CTCAG 1 cut(s) 54
BseRI GAGGAG 3 cut(s) 101, 460, 511
BseSI GKGCMC 1 cut(s) 380
BseXI GCAGC 2 cut(s) 275, 284
BshFI GGCC 2 cut(s) 284, 378
BsiHKAI GWGCWC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 398
BsmI GAATGC 1 cut(s) 217
BsnI GGCC 2 cut(s) 284, 378
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 241, 380
Bsp19I CCATGG 1 cut(s) 322
BspANI GGCC 2 cut(s) 284, 378
BspCNI CTCAG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 378
BspMAI CTGCAG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 267, 322
BssT1I CCWWGG 2 cut(s) 267, 322
Bst6I CTCTTC 1 cut(s) 78
BstC8I GCNNGC 2 cut(s) 277, 523
BstDEI CTNAG 2 cut(s) 63, 204
BstDSI CCRYGG 1 cut(s) 322
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 456
BstMWI GCNNNNNNNGC 5 cut(s) 245, 269, 272, 281, 464
BstNSI RCATGY 1 cut(s) 47
BstSFI CTRYAG 2 cut(s) 261, 393
BstSLI GKGCMC 1 cut(s) 380
BstV1I GCAGC 2 cut(s) 275, 284
BstV2I GAAGAC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 284, 378
BtgI CCRYGG 1 cut(s) 322
BtrI CACGTC 1 cut(s) 312
BtsCI GGATG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 277, 523
CaiI CAGNNNCTG 1 cut(s) 305
Cfr13I GGNCC 2 cut(s) 376, 377
CseI GACGC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 389
CviAII CATG 3 cut(s) 44, 139, 323
CviJI RGCY 9 cut(s) 239, 266, 275, 284, 335, 356, 378, 467, 503
CviKI_1 RGCY 9 cut(s) 239, 266, 275, 284, 335, 356, 378, 467, 503
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 63, 204
DriI GACNNNNNGTC 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 78
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 2 cut(s) 267, 322
Eco24I GRGCYC 2 cut(s) 241, 380
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoT14I CCWWGG 2 cut(s) 267, 322
EcoT38I GRGCYC 2 cut(s) 241, 380
ErhI CCWWGG 2 cut(s) 267, 322
FaeI CATG 3 cut(s) 47, 142, 326
FaiI YATR 8 cut(s) 45, 70, 140, 324, 346, 348, 395, 428
FatI CATG 3 cut(s) 43, 138, 322
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 264, 273
FokI GGATG 1 cut(s) 463
FriOI GRGCYC 2 cut(s) 241, 380
Fsp4HI GCNGC 2 cut(s) 264, 273
GluI GCNGC 2 cut(s) 264, 273
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 284, 378
HgaI GACGC 1 cut(s) 401
Hin1II CATG 3 cut(s) 47, 142, 326
HincII GTYRAC 1 cut(s) 416
HindII GTYRAC 1 cut(s) 416
HinfI GANTC 2 cut(s) 57, 162
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 50, 64
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 3 cut(s) 316, 319, 445
HpyAV CCTTC 1 cut(s) 45
HpyCH4IV ACGT 1 cut(s) 311
HpyCH4V TGCA 4 cut(s) 138, 263, 279, 521
HpyF10VI GCNNNNNNNGC 5 cut(s) 245, 269, 272, 281, 464
HpyF3I CTNAG 2 cut(s) 63, 204
HpySE526I ACGT 1 cut(s) 311
Hsp92II CATG 3 cut(s) 47, 142, 326
LmnI GCTCC 1 cut(s) 404
LpnPI CCDG 4 cut(s) 321, 338, 399, 453
Lsp1109I GCAGC 2 cut(s) 275, 284
LweI GCATC 1 cut(s) 292
MaeII ACGT 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 6 cut(s) 95, 137, 199, 263, 443, 521
MhlI GDGCHC 2 cut(s) 241, 380
MluCI AATT 2 cut(s) 16, 254
MnlI CCTC 7 cut(s) 79, 166, 438, 441, 464, 489, 492
MseI TTAA 3 cut(s) 102, 192, 231
Mva1269I GAATGC 1 cut(s) 217
MwoI GCNNNNNNNGC 5 cut(s) 245, 269, 272, 281, 464
NcoI CCATGG 1 cut(s) 322
NdeI CATATG 1 cut(s) 346
NlaIII CATG 3 cut(s) 47, 142, 326
NlaIV GGNNCC 1 cut(s) 378
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 47
PciI ACATGT 1 cut(s) 43
PctI GAATGC 1 cut(s) 217
PfeI GAWTC 2 cut(s) 57, 162
PkrI GCNGC 2 cut(s) 265, 274
PscI ACATGT 1 cut(s) 43
PshBI ATTAAT 1 cut(s) 231
Psp124BI GAGCTC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 378
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 2 cut(s) 376, 377
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 305
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 102, 192, 231
SatI GCNGC 2 cut(s) 264, 273
Sau96I GGNCC 2 cut(s) 376, 377
SduI GDGCHC 2 cut(s) 241, 380
SetI ASST 7 cut(s) 241, 277, 314, 388, 394, 403, 469
SfaNI GCATC 1 cut(s) 292
SfcI CTRYAG 2 cut(s) 261, 393
Sse9I AATT 2 cut(s) 16, 254
SstI GAGCTC 1 cut(s) 241
StyI CCWWGG 2 cut(s) 267, 322
TaiI ACGT 1 cut(s) 314
TaqI TCGA 3 cut(s) 147, 171, 317
TasI AATT 2 cut(s) 16, 254
TfiI GAWTC 2 cut(s) 57, 162
Tru1I TTAA 3 cut(s) 102, 192, 231
Tru9I TTAA 3 cut(s) 102, 192, 231
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 2 cut(s) 263, 272
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 1 cut(s) 467
VspI ATTAAT 1 cut(s) 231
XagI CCTNNNNNAGG 1 cut(s) 396
XceI RCATGY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.