Rorug01G0011700

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001457
Physical Location & Seq
Reverse (-)
1951171 .. 1951637
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0011700.1

Sequence Viewer

Length: 192 bp
ATGGAAATGAAGAAAATTACCTGCGCCGTCCTCTTTGCTGCTGCCTCAGTCAGCGCCGTGGTGGCTGCTCATGCCCCCGCCCCAACACCAGGACCTGCAGGAGCAGAAGCACCAACCAGTGGTGCCGCCGCTGCAAGCCTACCTATCTTGGGCTCCATGGTTGGTGCGTTTGTTGCCTACTACTTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

63

Amino Acids

6.08

Weight (kDa)

6.51

Isoelectric Point (pI)

30.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 29, 103
AccB1I GGYRCC 1 cut(s) 122
AccB7I CCANNNNNTGG 1 cut(s) 119
AciI CCGC 3 cut(s) 78, 126, 129
AfiI CCNNNNNNNGG 3 cut(s) 89, 119, 149
AjnI CCWGG 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 38, 41, 65, 131
AspLEI GCGC 2 cut(s) 26, 56
AspS9I GGNCC 1 cut(s) 92
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 155
BbvI GCAGC 4 cut(s) 25, 28, 52, 118
BceAI ACGGC 2 cut(s) 11, 41
BciT130I CCWGG 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 57
BfuAI ACCTGC 2 cut(s) 29, 103
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 6 cut(s) 39, 42, 66, 126, 129, 132
BlsI GCNGC 6 cut(s) 40, 43, 67, 127, 130, 133
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 2 cut(s) 124, 154
BmrFI CCNGG 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 57, 156
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 119, 149
Bse1I ACTGG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 57, 156
BseLI CCNNNNNNNGG 3 cut(s) 89, 119, 149
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 117
BseXI GCAGC 4 cut(s) 25, 28, 52, 118
BshNI GGYRCC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 89, 119, 149
Bsp1286I GDGCHC 1 cut(s) 155
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 3 cut(s) 78, 126, 129
BspCNI CTCAG 1 cut(s) 59
BspLI GGNNCC 2 cut(s) 124, 154
BspMAI CTGCAG 1 cut(s) 100
BspMI ACCTGC 2 cut(s) 29, 103
BspT107I GGYRCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 57, 156
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 46
BstDSI CCRYGG 2 cut(s) 57, 156
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 26, 56
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 131, 173
BstNI CCWGG 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 4 cut(s) 25, 28, 52, 118
BtgI CCRYGG 2 cut(s) 57, 156
BtsIMutI CAGTG 1 cut(s) 124
BveI ACCTGC 2 cut(s) 29, 103
Cac8I GCNNGC 1 cut(s) 136
CaiI CAGNNNCTG 1 cut(s) 95
CfoI GCGC 2 cut(s) 26, 56
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 2 cut(s) 71, 157
CviJI RGCY 3 cut(s) 65, 138, 153
CviKI_1 RGCY 3 cut(s) 65, 138, 153
DdeI CTNAG 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 74, 160
FaiI YATR 2 cut(s) 72, 158
FatI CATG 2 cut(s) 70, 156
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 6 cut(s) 39, 42, 66, 126, 129, 132
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 6 cut(s) 39, 42, 66, 126, 129, 132
GlaI GCGC 2 cut(s) 25, 55
GluI GCNGC 6 cut(s) 39, 42, 66, 126, 129, 132
HaeII RGCGCY 1 cut(s) 57
HhaI GCGC 2 cut(s) 26, 56
Hin1II CATG 2 cut(s) 74, 160
Hin6I GCGC 2 cut(s) 24, 54
HinP1I GCGC 2 cut(s) 24, 54
HpyCH4V TGCA 3 cut(s) 98, 134, 187
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 131, 173
HpyF3I CTNAG 1 cut(s) 46
Hsp92II CATG 2 cut(s) 74, 160
HspAI GCGC 2 cut(s) 24, 54
LmnI GCTCC 2 cut(s) 101, 158
LpnPI CCDG 6 cut(s) 34, 75, 84, 102, 108, 130
Lsp1109I GCAGC 4 cut(s) 25, 28, 52, 118
MboII GAAGA 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 1 cut(s) 15
MnlI CCTC 2 cut(s) 41, 55
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 131, 173
NcoI CCATGG 1 cut(s) 156
NlaIII CATG 2 cut(s) 74, 160
NlaIV GGNNCC 2 cut(s) 124, 154
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 6 cut(s) 40, 43, 67, 127, 130, 133
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 124, 154
PspPI GGNCC 1 cut(s) 92
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 95
SatI GCNGC 6 cut(s) 39, 42, 66, 126, 129, 132
Sau96I GGNCC 1 cut(s) 92
SbfI CCTGCAGG 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 90
SdaI CCTGCAGG 1 cut(s) 100
SduI GDGCHC 1 cut(s) 155
SetI ASST 3 cut(s) 23, 97, 145
SfcI CTRYAG 1 cut(s) 96
SinI GGWCC 1 cut(s) 92
Sse8387I CCTGCAGG 1 cut(s) 100
Sse9I AATT 1 cut(s) 15
SsiI CCGC 3 cut(s) 78, 126, 129
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 156
TasI AATT 1 cut(s) 15
TauI GCSGC 2 cut(s) 128, 131
TscAI CASTG 1 cut(s) 124
TseI GCWGC 4 cut(s) 38, 41, 65, 131
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.