Rh1BG016600

CDK-activating kinase assembly factor MAT1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001457
Physical Location & Seq
Forward (+)
2525387 .. 2525749
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG016600.1

Sequence Viewer

Length: 363 bp
ATGATTTTCCTTCTTTTGAGAGAATACAATGATTACTTGGAGGAAGTAGAGGATATGACGTTTAACTTGATCGAAGGAATAGATGTCCCTGCTATTGAAGCCAAAATTGCACAGTACCAGGAAGAAAATGCTGAACAAATAATGATTAATATAGCCCGCAAGGCTGAAGAACTAGCTGCAGCTCTAGCAGCAAGCAAGGGTCATCCTGTACAAAATGATACTGATGTGGCACTGAACCAAGGCTTTCAAGCAGGATTTGGTACTGGTATGCAGGGGCAATATGCACCTACAATTTCTGGACAACCACGACCAGTGGGCATGGGAGGCCCGCAACGTACCACTGCCACTCGGAGGGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03022 ko03420 map03022 map03420
Pfam Domains
Protein Families
MAT1

Protein Analysis

120

Amino Acids

13.04

Weight (kDa)

4.56

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAT1 PF06391 5 - 61 2.4e-18 CDK-activating kinase assembly factor MAT1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 157, 329
AcuI CTGAAG 1 cut(s) 186
AfaI GTAC 4 cut(s) 116, 210, 262, 337
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 2 cut(s) 98, 248
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 176, 182
AluI AGCT 2 cut(s) 176, 182
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 3 cut(s) 176, 179, 188
AseI ATTAAT 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 210, 243
BbvI GCAGC 3 cut(s) 163, 191, 200
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 2 cut(s) 173, 185
BfmI CTRYAG 1 cut(s) 177
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 3 cut(s) 177, 180, 189
BlsI GCNGC 3 cut(s) 178, 181, 190
Bme1390I CCNGG 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 326
BmrFI CCNGG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse1I ACTGG 2 cut(s) 268, 311
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 268, 311
BseXI GCAGC 3 cut(s) 163, 191, 200
BshFI GGCC 1 cut(s) 327
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 351
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 1 cut(s) 327
Bsp1407I TGTACA 1 cut(s) 208
Bsp143I GATC 1 cut(s) 69
BspACI CCGC 2 cut(s) 157, 329
BspANI GGCC 1 cut(s) 327
BspMAI CTGCAG 1 cut(s) 181
BsrGI TGTACA 1 cut(s) 208
BsrI ACTGG 2 cut(s) 268, 311
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 114
BstAUI TGTACA 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 157, 193, 329
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 72
BstMBI GATC 1 cut(s) 69
BstMWI GCNNNNNNNGC 6 cut(s) 98, 107, 161, 185, 188, 324
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 3 cut(s) 163, 191, 200
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 202
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 3 cut(s) 230, 318, 339
Cac8I GCNNGC 3 cut(s) 157, 193, 329
Cfr13I GGNCC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 115, 209, 261, 336
CviAII CATG 2 cut(s) 319, 360
CviJI RGCY 7 cut(s) 101, 155, 164, 176, 182, 243, 327
CviKI_1 RGCY 7 cut(s) 101, 155, 164, 176, 182, 243, 327
CviQI GTAC 4 cut(s) 115, 209, 261, 336
DpnI GATC 1 cut(s) 71
DpnII GATC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 238
Eco57I CTGAAG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 322, 363
FaiI YATR 6 cut(s) 56, 152, 269, 282, 320, 361
FaqI GGGAC 1 cut(s) 71
FatI CATG 2 cut(s) 318, 359
FauI CCCGC 2 cut(s) 164, 336
Fnu4HI GCNGC 3 cut(s) 177, 180, 189
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 3 cut(s) 177, 180, 189
FspBI CTAG 2 cut(s) 173, 185
GluI GCNGC 3 cut(s) 177, 180, 189
HaeIII GGCC 1 cut(s) 327
Hin1II CATG 2 cut(s) 322, 363
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 1 cut(s) 297
HpyAV CCTTC 2 cut(s) 20, 68
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4IV ACGT 2 cut(s) 59, 334
HpyCH4V TGCA 5 cut(s) 110, 179, 271, 284, 359
HpyF10VI GCNNNNNNNGC 6 cut(s) 98, 107, 161, 185, 188, 324
HpySE526I ACGT 2 cut(s) 59, 334
Hsp92II CATG 2 cut(s) 322, 363
Kzo9I GATC 1 cut(s) 69
LpnPI CCDG 9 cut(s) 102, 104, 131, 219, 237, 249, 257, 282, 324
Lsp1109I GCAGC 3 cut(s) 163, 191, 200
MaeI CTAG 2 cut(s) 173, 185
MaeII ACGT 2 cut(s) 59, 334
MalI GATC 1 cut(s) 71
MboI GATC 1 cut(s) 69
MboII GAAGA 2 cut(s) 134, 179
MluCI AATT 2 cut(s) 105, 291
MnlI CCTC 4 cut(s) 34, 43, 317, 345
MseI TTAA 2 cut(s) 63, 147
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 6 cut(s) 98, 107, 161, 185, 188, 324
NdeII GATC 1 cut(s) 69
NlaIII CATG 2 cut(s) 322, 363
PkrI GCNGC 3 cut(s) 178, 181, 190
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspPI GGNCC 1 cut(s) 326
PstI CTGCAG 1 cut(s) 181
RsaI GTAC 4 cut(s) 116, 210, 262, 337
RsaNI GTAC 4 cut(s) 115, 209, 261, 336
SaqAI TTAA 2 cut(s) 63, 147
SatI GCNGC 3 cut(s) 177, 180, 189
Sau3AI GATC 1 cut(s) 69
Sau96I GGNCC 1 cut(s) 326
ScrFI CCNGG 1 cut(s) 119
SetI ASST 5 cut(s) 62, 178, 184, 289, 337
SfcI CTRYAG 1 cut(s) 177
Sse9I AATT 2 cut(s) 105, 291
SsiI CCGC 2 cut(s) 157, 329
SspMI CTAG 2 cut(s) 173, 185
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 114
TaiI ACGT 2 cut(s) 62, 337
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 105, 291
TatI WGTACW 1 cut(s) 208
Tru1I TTAA 2 cut(s) 63, 147
Tru9I TTAA 2 cut(s) 63, 147
TscAI CASTG 3 cut(s) 237, 318, 346
TseI GCWGC 3 cut(s) 176, 179, 188
TspRI CASTG 3 cut(s) 237, 318, 346
VspI ATTAAT 1 cut(s) 147
XspI CTAG 2 cut(s) 173, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.