Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001457

Physical Location & Seq

Genomic Coordinates Forward (+)

9093246 .. 9094630

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGTGGTTACCAATTCTAATTCCCAGAACAGGGAGATTGTGGTCAGGAAGAGGATTGCAAGCATATTCAATAAACGAGAAGAGGATTTTTCTTCCTTGAGAGAATACAATGATTACTTGGAGGAAGTGGAGGACATGACATTTGACTTGATCGAAGGAATAGATGTTCCTGCTATTGAATCGAAAATTGCCAAGTACCAGGAAGAAAATGCCGAACAAATAATGATTAACAGAGCTCGTAAGGCTGAAGAGCTTGCTGCAGCTCTCGCAGCAAGCAAGGGACATCCTGTACAAAATGAAACTGATGCGGTAAGAGGTCTGAGCCAAGGCTCACAAGCAGGATTTGGTGCTGGTACACAGGGCCAGTATGCTCCTACAGTTTCAGGGCAACCACGTCCAACCGGCGGCATGGGTCCACAACCACTACCACTTGGAGGAGGGGGGCATGATCTGCACGGATACGCTGTTGACGATGAAGAAATGGTGAAGCTGCGAGCAGAGAGGGGTGGTCGGGCAGGAGGGTGGAGTGGAGAGATAAGCAGGAAGAGGGCACTTGAAGAAGCCTTTGGTAGCATTTGGATTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

MAT1

Protein Analysis

196

Amino Acids

21.21

Weight (kDa)

5.02

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820
fragaria_vesca	FvH4_1g00560 FvH4_1g00560 FvH4_1g00560
malus_domestica	MD02G1004700.v1.1 MD15G1148500.v1.1
prunus_persica	Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1
pyrus_communis	pycom15g13280
rosa_chinensis	RchiOBHm_Chr2g0085191
rosa_laevigata	RLG00000015665
rosa_multiflora	Rmu_sc0008647.1_g000004 Rmu_sc0011989.1_g000004
rosa_rugosa	Rorug01G0011700 Rorug01G0458200 Rorug01G0458300 Rorug01G0458400 Rorug01G0458400
rosa_samantha	Rh1BG016600 Rh2AG006700 Rh2BG007400 Rh2CG008200 Rh2DG008400
rosa_wichuraiana	Rw2G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	308, 405
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	3 cut(s)	197, 291, 355
AfiI	CCNNNNNNNGG	4 cut(s)	30, 31, 404, 434
AgsI	TTSAA	3 cut(s)	70, 179, 557
AjiI	CACGTC	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	549, 581
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	4 cut(s)	236, 253, 263, 490
AluI	AGCT	4 cut(s)	236, 253, 263, 490
Alw21I	GWGCWC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	4 cut(s)	257, 260, 269, 490
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspS9I	GGNCC	2 cut(s)	361, 413
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	553
BanII	GRGCYC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BbvI	GCAGC	4 cut(s)	244, 272, 281, 477
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	452
BfmI	CTRYAG	2 cut(s)	258, 375
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	5 cut(s)	258, 261, 270, 406, 491
BlsI	GCNGC	5 cut(s)	259, 262, 271, 407, 492
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	395
BmgT120I	GGNCC	2 cut(s)	361, 413
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	325
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 31, 404, 434
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	364
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	4 cut(s)	30, 31, 404, 434
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	450
BseSI	GKGCMC	1 cut(s)	553
BseXI	GCAGC	4 cut(s)	244, 272, 281, 477
BsgI	GTGCAG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	238
BsiSI	CCGG	1 cut(s)	402
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	30, 31, 404, 434
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	2 cut(s)	238, 553
Bsp1407I	TGTACA	1 cut(s)	289
Bsp143I	GATC	2 cut(s)	150, 448
BspACI	CCGC	2 cut(s)	308, 405
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	312
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	289
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	150, 448
BssT1I	CCWWGG	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	379
Bst6I	CTCTTC	4 cut(s)	44, 75, 243, 539
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	289
BstC8I	GCNNGC	4 cut(s)	61, 255, 274, 495
BstDEI	CTNAG	1 cut(s)	320
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	153, 451
BstMBI	GATC	2 cut(s)	150, 448
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 266, 269, 451
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	2 cut(s)	258, 375
BstSLI	GKGCMC	1 cut(s)	553
BstV1I	GCAGC	4 cut(s)	244, 272, 281, 477
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	4 cut(s)	61, 255, 274, 495
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	361, 413
Csp6I	GTAC	3 cut(s)	196, 290, 354
CviAII	CATG	3 cut(s)	136, 409, 446
CviJI	RGCY	9 cut(s)	236, 245, 253, 263, 324, 330, 363, 490, 563
CviKI_1	RGCY	9 cut(s)	236, 245, 253, 263, 324, 330, 363, 490, 563
CviQI	GTAC	3 cut(s)	196, 290, 354
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	152, 450
DpnII	GATC	2 cut(s)	150, 448
Eam1104I	CTCTTC	4 cut(s)	44, 75, 243, 539
EarI	CTCTTC	4 cut(s)	44, 75, 243, 539
Ecl136II	GAGCTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	325
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	413
Eco53kI	GAGCTC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	7
EcoICRI	GAGCTC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	325
FaeI	CATG	3 cut(s)	139, 412, 449
FaiI	YATR	5 cut(s)	65, 137, 369, 410, 447
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	3 cut(s)	135, 408, 445
Fnu4HI	GCNGC	5 cut(s)	258, 261, 270, 406, 491
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	5 cut(s)	258, 261, 270, 406, 491
GluI	GCNGC	5 cut(s)	258, 261, 270, 406, 491
HaeIII	GGCC	1 cut(s)	363
HapII	CCGG	1 cut(s)	402
Hin1II	CATG	3 cut(s)	139, 412, 449
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	402
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	3 cut(s)	356, 416, 469
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	1 cut(s)	46
Hpy8I	GTNNAC	3 cut(s)	356, 416, 469
HpyAV	CCTTC	1 cut(s)	149
HpyCH4III	ACNGT	1 cut(s)	379
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	3 cut(s)	59, 260, 454
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 266, 269, 451
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	139, 412, 449
Kzo9I	GATC	2 cut(s)	150, 448
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	4 cut(s)	244, 272, 281, 477
LweI	GCATC	1 cut(s)	295
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	2 cut(s)	152, 450
MboI	GATC	2 cut(s)	150, 448
MboII	GAAGA	8 cut(s)	61, 84, 92, 215, 260, 488, 556, 569
MhlI	GDGCHC	2 cut(s)	238, 553
MluCI	AATT	3 cut(s)	13, 19, 186
MmeI	TCCRAC	1 cut(s)	422
MseI	TTAA	1 cut(s)	228
MspI	CCGG	1 cut(s)	402
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	4 cut(s)	242, 266, 269, 451
NdeII	GATC	2 cut(s)	150, 448
NlaIII	CATG	3 cut(s)	139, 412, 449
NlaIV	GGNNCC	1 cut(s)	414
PciSI	GCTCTTC	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	259, 262, 271, 407, 492
Psp124BI	GAGCTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	2 cut(s)	361, 413
PstI	CTGCAG	1 cut(s)	262
RsaI	GTAC	3 cut(s)	197, 291, 355
RsaNI	GTAC	3 cut(s)	196, 290, 354
SacI	GAGCTC	1 cut(s)	238
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	5 cut(s)	258, 261, 270, 406, 491
Sau3AI	GATC	2 cut(s)	150, 448
Sau96I	GGNCC	2 cut(s)	361, 413
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	238, 553
SetI	ASST	6 cut(s)	238, 255, 265, 319, 397, 492
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	2 cut(s)	258, 375
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	3 cut(s)	13, 19, 186
SsiI	CCGC	2 cut(s)	308, 405
SstI	GAGCTC	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	325
TaaI	ACNGT	1 cut(s)	379
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	153, 182
TasI	AATT	3 cut(s)	13, 19, 186
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseI	GCWGC	4 cut(s)	257, 260, 269, 490
TspDTI	ATGAA	2 cut(s)	312, 489
TspGWI	ACGGA	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.