Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001457

Physical Location & Seq

Genomic Coordinates Reverse (-)

21964720 .. 21967879

Gene Structure 3160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTGGTTACCAGTTCTAATCCCCACAACAAGGAGATTGTCGTCAGGAAGAGGATTGCGAGCATATTCAATAAACGGGAAGAGGATTTTCCGTCCTTGAAAGAATACAATGATTACTTGGAGGAAGTGGAGGACATGACATTTAACTTGATCGATGGAATAGATGTCCCTGCTATTGAAGCAAAAATTGCAAAGTATCAGGAAGAAAATGCTGAACAAATAATGATTAATAGAGCCCGTAAGGCTGAAGAGCTTGCTGCAGCTCTAGCAGCAAGCAAGGGACATCCTGCACAGAATGATACTGATGCGGCTCTGAGCCAAGGCTCTCAAGCAGGATTTGGTACTGGTACACAGGGGCAGTATGCCCCTACAGTTGCAGGACAACCACGACCAACTGGCATGGGTCCACAACCACTACCACTTGGAGGGGGGCATGATATGCACGGATATGCTGTTGACGATGAAGAAATGATAAAGCTCCGAGCAGAGAGAGGTGGTAGGGCAGGAGGGTGGAGTGTAGAGATAAGCAGGAAGAGGGCACTCGAAGAAGCCTTCAGTAGCATTTGGGTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

MAT1

Protein Analysis

192

Amino Acids

20.81

Weight (kDa)

5.08

Isoelectric Point (pI)

53.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820
fragaria_vesca	FvH4_1g00560 FvH4_1g00560 FvH4_1g00560
malus_domestica	MD02G1004700.v1.1 MD15G1148500.v1.1
prunus_persica	Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1
pyrus_communis	pycom15g13280
rosa_chinensis	RchiOBHm_Chr2g0085191
rosa_laevigata	RLG00000015665
rosa_multiflora	Rmu_sc0008647.1_g000004 Rmu_sc0011989.1_g000004
rosa_rugosa	Rorug01G0011700 Rorug01G0458200 Rorug01G0458300 Rorug01G0458400 Rorug01G0458400
rosa_samantha	Rh1BG016600 Rh2AG006700 Rh2BG007400 Rh2CG008200 Rh2DG008400
rosa_wichuraiana	Rw2G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	308
AcuI	CTGAAG	2 cut(s)	267, 538
AfaI	GTAC	2 cut(s)	343, 349
AfiI	CCNNNNNNNGG	2 cut(s)	31, 425
AgsI	TTSAA	3 cut(s)	70, 100, 179
AluBI	AGCT	3 cut(s)	253, 263, 478
AluI	AGCT	3 cut(s)	253, 263, 478
ApeKI	GCWGC	3 cut(s)	257, 260, 269
AseI	ATTAAT	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	404
AvaII	GGWCC	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	244, 272, 281
BccI	CCATC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	2 cut(s)	258, 369
BglI	GCCNNNNNGGC	1 cut(s)	242
BisI	GCNGC	4 cut(s)	258, 261, 270, 309
BlsI	GCNGC	4 cut(s)	259, 262, 271, 310
Bme18I	GGWCC	1 cut(s)	404
BmgT120I	GGNCC	1 cut(s)	404
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	312
Bsa29I	ATCGAT	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 425
Bse1I	ACTGG	3 cut(s)	12, 349, 400
BseCI	ATCGAT	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	31, 425
BseMII	CTCAG	1 cut(s)	305
BseNI	ACTGG	3 cut(s)	12, 349, 400
BseSI	GKGCMC	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	244, 272, 281
BsgI	GTGCAG	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	152, 294
BslI	CCNNNNNNNGG	2 cut(s)	31, 425
BsmFI	GGGAC	2 cut(s)	152, 294
Bsp1286I	GDGCHC	2 cut(s)	238, 541
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	262
BspQI	GCTCTTC	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	12, 349, 400
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	373
Bst6I	CTCTTC	4 cut(s)	44, 75, 243, 527
BstAPI	GCANNNNNTGC	2 cut(s)	188, 439
BstC8I	GCNNGC	3 cut(s)	61, 255, 274
BstDEI	CTNAG	1 cut(s)	314
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 188, 242, 266, 269, 439
BstPI	GGTNACC	1 cut(s)	7
BstSFI	CTRYAG	2 cut(s)	258, 369
BstSLI	GKGCMC	1 cut(s)	541
BstV1I	GCAGC	3 cut(s)	244, 272, 281
Bsu15I	ATCGAT	1 cut(s)	153
BsuTUI	ATCGAT	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	61, 255, 274
Cfr13I	GGNCC	1 cut(s)	404
ClaI	ATCGAT	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	342, 348
CviAII	CATG	3 cut(s)	136, 400, 434
CviJI	RGCY	9 cut(s)	236, 245, 253, 263, 311, 318, 324, 478, 551
CviKI_1	RGCY	9 cut(s)	236, 245, 253, 263, 311, 318, 324, 478, 551
CviQI	GTAC	2 cut(s)	342, 348
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eam1104I	CTCTTC	4 cut(s)	44, 75, 243, 527
EarI	CTCTTC	4 cut(s)	44, 75, 243, 527
Eco130I	CCWWGG	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	404
Eco57I	CTGAAG	2 cut(s)	267, 538
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoT14I	CCWWGG	1 cut(s)	319
EcoT38I	GRGCYC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	3 cut(s)	139, 403, 437
FaiI	YATR	7 cut(s)	65, 137, 363, 401, 435, 440, 450
FaqI	GGGAC	2 cut(s)	152, 294
FatI	CATG	3 cut(s)	135, 399, 433
Fnu4HI	GCNGC	4 cut(s)	258, 261, 270, 309
FokI	GGATG	1 cut(s)	270
FriOI	GRGCYC	1 cut(s)	238
Fsp4HI	GCNGC	4 cut(s)	258, 261, 270, 309
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	4 cut(s)	258, 261, 270, 309
Hin1II	CATG	3 cut(s)	139, 403, 437
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
Hpy166II	GTNNAC	3 cut(s)	350, 407, 457
Hpy188I	TCNGA	2 cut(s)	315, 482
Hpy188III	TCNNGA	2 cut(s)	46, 200
Hpy8I	GTNNAC	3 cut(s)	350, 407, 457
HpyAV	CCTTC	1 cut(s)	562
HpyCH4III	ACNGT	1 cut(s)	373
HpyCH4V	TGCA	5 cut(s)	191, 260, 290, 377, 442
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 188, 242, 266, 269, 439
HpyF3I	CTNAG	1 cut(s)	314
Hsp92II	CATG	3 cut(s)	139, 403, 437
Kzo9I	GATC	1 cut(s)	150
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	3 cut(s)	244, 272, 281
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	7 cut(s)	61, 92, 215, 260, 476, 544, 557
MhlI	GDGCHC	2 cut(s)	238, 541
MluCI	AATT	1 cut(s)	186
MnlI	CCTC	8 cut(s)	45, 76, 115, 124, 419, 485, 500, 528
MseI	TTAA	2 cut(s)	144, 228
MslI	CAYNNNNRTG	1 cut(s)	447
MwoI	GCNNNNNNNGC	6 cut(s)	179, 188, 242, 266, 269, 439
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	139, 403, 437
NlaIV	GGNNCC	1 cut(s)	405
PciSI	GCTCTTC	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	259, 262, 271, 310
PshBI	ATTAAT	1 cut(s)	228
PspEI	GGTNACC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	404
PstI	CTGCAG	1 cut(s)	262
RsaI	GTAC	2 cut(s)	343, 349
RsaNI	GTAC	2 cut(s)	342, 348
RseI	CAYNNNNRTG	1 cut(s)	447
SapI	GCTCTTC	1 cut(s)	243
SaqAI	TTAA	2 cut(s)	144, 228
SatI	GCNGC	4 cut(s)	258, 261, 270, 309
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	404
SduI	GDGCHC	2 cut(s)	238, 541
SetI	ASST	4 cut(s)	255, 265, 480, 496
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	2 cut(s)	258, 369
SinI	GGWCC	1 cut(s)	404
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	1 cut(s)	308
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	373
TaqI	TCGA	2 cut(s)	153, 543
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	144, 228
Tru9I	TTAA	2 cut(s)	144, 228
TseI	GCWGC	3 cut(s)	257, 260, 269
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	81, 459
VpaK11BI	GGWCC	1 cut(s)	404
VspI	ATTAAT	1 cut(s)	228
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.