Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0001457

Physical Location & Seq

Genomic Coordinates Reverse (-)

7086 .. 8014

Gene Structure 929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atgacgtttaacttgatcgaaggaatagatgtccctgctattgaagccaaaattgcacagtaccaggaagaaaatgctgaacaaataatgattaatagagcccgcaaggctgaagaactagctgcagctgtagcagcaagcaagggtcatcctgtacaaaatgatactgatgtggcactgaaccaaggctttcaagcaggatttggtactggtatgcaggggcaatatgcacctacaatttctggacaaccacgaccagtgggcatgggaggcccgcaaccactgccactcggaggggtgcatgatatgcatggatatgatgatgaagaaatgatgcagctgcgagcagagagaggtccaagggcaggagggtggagtccaatgataagcaggaagagggcacttgaagaagccttcagtagcatttggatttcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 map03022 map03420

Pfam Domains

Protein Families

MAT1

Protein Analysis

145

Amino Acids

15.66

Weight (kDa)

5.0

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820 AT4G30820
fragaria_vesca	FvH4_1g00560 FvH4_1g00560 FvH4_1g00560
malus_domestica	MD02G1004700.v1.1 MD15G1148500.v1.1
prunus_persica	Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1 Prupe.7G266400_v2.0.a1
pyrus_communis	pycom15g13280
rosa_chinensis	RchiOBHm_Chr2g0085191
rosa_laevigata	RLG00000015665
rosa_multiflora	Rmu_sc0008647.1_g000004 Rmu_sc0011989.1_g000004
rosa_rugosa	Rorug01G0011700 Rorug01G0458200 Rorug01G0458300 Rorug01G0458400 Rorug01G0458400
rosa_samantha	Rh1BG016600 Rh2AG006700 Rh2BG007400 Rh2CG008200 Rh2DG008400
rosa_wichuraiana	Rw2G000630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	103, 275
AcuI	CTGAAG	2 cut(s)	132, 400
AfaI	GTAC	3 cut(s)	62, 156, 208
AfiI	CCNNNNNNNGG	2 cut(s)	293, 365
AgsI	TTSAA	3 cut(s)	44, 194, 407
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	3 cut(s)	122, 128, 340
AluI	AGCT	3 cut(s)	122, 128, 340
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	5 cut(s)	122, 125, 134, 337, 340
AseI	ATTAAT	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	272, 356
AvaII	GGWCC	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	403
BaeI	ACNNNNGTAYC	2 cut(s)	156, 189
BanII	GRGCYC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	109, 137, 146, 327, 349
BciT130I	CCWGG	1 cut(s)	65
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	2 cut(s)	123, 129
BglI	GCCNNNNNGGC	1 cut(s)	107
BisI	GCNGC	5 cut(s)	123, 126, 135, 338, 341
BlsI	GCNGC	5 cut(s)	124, 127, 136, 339, 342
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	272, 356
BmrFI	CCNGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	184, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 365
Bse1I	ACTGG	2 cut(s)	214, 257
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	184, 359
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	293, 365
BseNI	ACTGG	2 cut(s)	214, 257
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	5 cut(s)	109, 137, 146, 327, 349
BshFI	GGCC	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	293, 365
BsmFI	GGGAC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	103, 403
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	103, 275
BspANI	GGCC	1 cut(s)	273
BspMAI	CTGCAG	1 cut(s)	127
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	2 cut(s)	214, 257
BssECI	CCNNGG	2 cut(s)	184, 359
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	2 cut(s)	184, 359
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	60
Bst6I	CTCTTC	1 cut(s)	389
BstAPI	GCANNNNNTGC	2 cut(s)	283, 307
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	103, 139, 275, 345
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	8 cut(s)	44, 53, 107, 131, 134, 270, 283, 307
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	2 cut(s)	123, 129
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	5 cut(s)	109, 137, 146, 327, 349
BsuRI	GGCC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	3 cut(s)	176, 264, 281
Cac8I	GCNNGC	4 cut(s)	103, 139, 275, 345
Cfr13I	GGNCC	2 cut(s)	272, 356
Csp6I	GTAC	3 cut(s)	61, 155, 207
CviAII	CATG	3 cut(s)	265, 302, 311
CviJI	RGCY	9 cut(s)	47, 101, 110, 122, 128, 189, 273, 340, 413
CviKI_1	RGCY	9 cut(s)	47, 101, 110, 122, 128, 189, 273, 340, 413
CviQI	GTAC	3 cut(s)	61, 155, 207
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	184, 359
Eco24I	GRGCYC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	356
Eco57I	CTGAAG	2 cut(s)	132, 400
EcoRII	CCWGG	1 cut(s)	63
EcoT14I	CCWWGG	2 cut(s)	184, 359
EcoT22I	ATGCAT	1 cut(s)	312
EcoT38I	GRGCYC	1 cut(s)	103
ErhI	CCWWGG	2 cut(s)	184, 359
FaeI	CATG	3 cut(s)	268, 305, 314
FaiI	YATR	8 cut(s)	215, 228, 266, 303, 308, 312, 318, 436
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	3 cut(s)	264, 301, 310
FauI	CCCGC	2 cut(s)	110, 282
Fnu4HI	GCNGC	5 cut(s)	123, 126, 135, 338, 341
FokI	GGATG	1 cut(s)	135
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	5 cut(s)	123, 126, 135, 338, 341
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	5 cut(s)	123, 126, 135, 338, 341
HaeIII	GGCC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	268, 305, 314
HinfI	GANTC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	14, 424
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	56, 125, 217, 230, 301, 310, 337
HpyF10VI	GCNNNNNNNGC	8 cut(s)	44, 53, 107, 131, 134, 270, 283, 307
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	268, 305, 314
Kzo9I	GATC	1 cut(s)	15
Lsp1109I	GCAGC	5 cut(s)	109, 137, 146, 327, 349
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	1 cut(s)	5
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	5 cut(s)	80, 125, 338, 406, 419
MhlI	GDGCHC	2 cut(s)	103, 403
MluCI	AATT	2 cut(s)	51, 237
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	5 cut(s)	263, 287, 347, 362, 390
Mph1103I	ATGCAT	1 cut(s)	312
MseI	TTAA	2 cut(s)	9, 93
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	2 cut(s)	128, 340
MspR9I	CCNGG	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	8 cut(s)	44, 53, 107, 131, 134, 270, 283, 307
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	268, 305, 314
NsiI	ATGCAT	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	124, 127, 136, 339, 342
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PshBI	ATTAAT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	272, 356
PstI	CTGCAG	1 cut(s)	127
PvuII	CAGCTG	2 cut(s)	128, 340
RsaI	GTAC	3 cut(s)	62, 156, 208
RsaNI	GTAC	3 cut(s)	61, 155, 207
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	9, 93
SatI	GCNGC	5 cut(s)	123, 126, 135, 338, 341
Sau3AI	GATC	1 cut(s)	15
Sau96I	GGNCC	2 cut(s)	272, 356
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	103, 403
SetI	ASST	6 cut(s)	8, 124, 130, 235, 342, 358
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	2 cut(s)	123, 129
SinI	GGWCC	1 cut(s)	356
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	2 cut(s)	51, 237
SsiI	CCGC	2 cut(s)	103, 275
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	2 cut(s)	184, 359
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	18
TasI	AATT	2 cut(s)	51, 237
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	9, 93
Tru9I	TTAA	2 cut(s)	9, 93
TscAI	CASTG	3 cut(s)	183, 264, 288
TseI	GCWGC	5 cut(s)	122, 125, 134, 337, 340
TspDTI	ATGAA	2 cut(s)	339, 423
TspRI	CASTG	3 cut(s)	183, 264, 288
VpaK11BI	GGWCC	1 cut(s)	356
VspI	ATTAAT	1 cut(s)	93
XspI	CTAG	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.