Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

628806 .. 631457

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG007000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGCCTCACTACAATTCCCCATTTCCTTGGAGACATTAGATTCTTCAAAAAAGTTCAATTATTTTTGCTACAGTAGAGCTGCTTCTGTTGTTTTGAATAGGGTGAATGCCATTAAGGTCTCTCGGTTCCAATCTGAGTTGCCAGTAGATGAGAGTTTTGTTGAGCAAAACCCAGATTGTTCAAGACTTGAAATTGATAAGGGAAGTAGTGGCACAAAGAAAGTGAGCAAGAGAGAAGTGGGTTTGAGGTCTAGTTCTAGAAAGAGTAAGTGGGTTAGGAAATTGGAGAATTTGTTTGTGAATGATGGTGAGTTTGATGTTGATTACTCTGTTATCAAGTCTGACCTGAGCTTAGAGCATTGTAATGATATTTTGAAGAGGCTAGAGAGGTCTAGTGATGTCAAAACTCTCAAGTTTTTTGAGTGGATGAGAAGCAATGGGAAACTCAAATGCAATTTGAGTGCTTTTAGCTCGGTTTTTCGCGTGTTGGGTAGGAGAGAAAATTGGGATGCAGCTGAGAAATTGATTCAGGAAATGGTTACTGAATTTGGATGTGAGCTGAATTATCAGGTCTTCAATACCCTTATTTATGCATGTAGTAAATTGGGGCGTGTGGAGTTTGGAGCTAAGTGGTTTCGAATGATGCTTGAACATGAAGTCCAGCCGAATGTTGCGACATTTGGTATGCTGATGGGGCTTTACCAGAAGGGTTGGAATGTTGAGGAAGCCGAGTTCACTTTTTCTCGAATGAGGAACTTTGGGATTGTATGTCAATCTGCATACTCCGCAATGATCACAATTTATACCCGTATGAATTTGTATGACAGGGCAGAAGAGATCATTGGCTTAATGAAAGAAGATGGAGTGAGACCGAATTTGGATAACTGGTTGGTAATGATTAATGCTTATTGTCAGCAGGGAAAAGTAGAAGCTGCTGAATTAGTGTTAGTCTCCATGAAAGGAGCTGGGTTTTCTCCAAACATTGTTGCATACAATACATTGATAACCGGATATGGGAAGGCATCCAAAATGGACGCTGCTCATCACCTATTTCTTGGCATCAAGAAAGTCGGATTAGAGCCTGATGAAACAACTTACCGGTCCATGATTGAAGGTTGGGGTAGAGCTGACAATTATAAGGAAGCAGATTGGTACTATAAAGAGCTCAAGCGTTTGGGCTACAAGCCTAATTCGTCTAACCTGTACACACTAATAAACTTGCAGGCCAAACATGAGGATGAAGAGGGGGCCATCAGAACTCTTGATGATATGCAGGAGATAGGATGCCAATATTCATCAATGCTTGGCACTCTTCTGCAAGCATATGAGAAGGCCGGAAGGATTGATAAAGTGCCTTTCCTTTTGAGAGGTTCATTATATCAACACGTTCTTGTCAGCCGGACTTCTTGTTCGAGTCTTGTCATGGCTTATGTGAAACACTGCTTGGTGGATGATACTATGAAAGTGTTGAGGGAAAAACAGTGGAAGGATCCACATTTTGAAGATAACTTGTACCATTTGTTAATTTGCTCGTGTAAAGAGTTGGGTCATCTTGAGAATGCTGTTACAATATACAATCAAATGCCCAGACATGATGGCAAGCCAAACATGCACATCATGTGCACAATGATTGACATTTACAGCATCATGGATCTCTTCTCTGAAGCAGAGAAAGTTTATGTCGAGTTGAAATCCTCAGGAATCGCTTTGGACATGATTGCCTATGGTATTGCTGTAAGAATGTATGTCAAAGCTGGCTCTTTGGAAGATGCTTGCTCTGTTCTGGACACAATGGACAAACAGGAGGGAATAGTTCCAGACATCTACATGTTACGTGATATGTTCCGTATTTATCAAAAATGTGGCAGACTTGATAAGTTGAAAGATTTGTACTATCGAATCTTGAAGACTAGAGTGACTTGGGATCAGGAAATGTACAATTGTGTCATAAACTGCTGTTCTCGTGCTTTGCCAATTGATGAGATCTCAGAGATGTTTGATCAGATGCTTCAACGTGGGTTTGTACCTAATACCATAACCTTCAATGTCATGCTTGATGTATATGGGAAAGCAAAGCTCTTAAAGAAGGCTAGGAAGTTGTTCTTGATGGCCCAGAAATGGGATCTGGTTGATACAATCTCTTACAATACTATTATAGCTGCGTATGGGAGAAACAGAGACTTCAAAAGCATGTCTTCAACGGTACGAGAGATGCAGTTTAAAGGATTTTCAGTTTCCCTTGAAGTCTACAATAGTATGCTGAATGCTTATGGGAAAGAAAGCCAAATGGAGCAGTTCAGAAGCGTTTTGCAAAGAATGAAGGAGACAAGCTGTGCTTCGGACCATCACACCTACAACATTATGATCAATATCTATGGAGAGCAAGGATGGATTGATGAAGTTGCTGGGGTGCTGACTGAGTTGAAAGAATGTGGACTGGGACCTGATCTGTGTAGCTATAACACATTGATTAAGGCATATGGAATTGCAGGAATGGTCGAAGATGCTGTCCGTTTGCTCAGGGAAATGAGAGATAATGGTATAGAGCCTGATAAGATTACATACATCAATCTGATTGCTGCACTACGAAAAAATGATGAATATTTGGAGGCTGTAAAGTGGTCCTTGTGGATGAAGCAGATGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

883

Amino Acids

101.61

Weight (kDa)

6.73

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	260 - 303	1e-05	Pentatricopeptide repeat domain
PPR_3	PF13812	299 - 340	6.7e-06	Pentatricopeptide repeat domain
PPR_3	PF13812	316 - 371	1.2e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 372	4.3e-13	PPR repeat family
PPR_2	PF13041	645 - 688	2.7e-09	PPR repeat family
PPR_3	PF13812	735 - 794	2.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	749 - 790	8.7e-10	PPR repeat family
TPR_24	PF23276	801 - 871	5.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	812 - 844	4.4e-09	PPR repeat
PPR_2	PF13041	815 - 862	2.1e-13	PPR repeat family
PPR	PF01535	819 - 848	2.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccI	GTMKAC	1 cut(s)	2247
AccII	CGCG	1 cut(s)	483
AciI	CCGC	1 cut(s)	786
AclWI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
AcsI	RAATTY	4 cut(s)	289, 545, 814, 874
AcuI	CTGAAG	1 cut(s)	1683
AfaI	GTAC	7 cut(s)	1154, 1205, 1514, 1892, 1937, 2025, 2205
AfiI	CCNNNNNNNGG	3 cut(s)	1014, 2118, 2119
AflIII	ACRYGT	2 cut(s)	1384, 1827
AgeI	ACCGGT	1 cut(s)	1098
AjuI	GAANNNNNNNTTGG	4 cut(s)	825, 857, 1427, 1459
AloI	GAACNNNNNNTCC	6 cut(s)	642, 674, 716, 748, 1393, 1425
Alw21I	GWGCWC	2 cut(s)	1167, 1625
Alw26I	GTCTC	6 cut(s)	26, 124, 862, 955, 2172, 2318
Alw44I	GTGCAC	1 cut(s)	1621
AlwI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
AoxI	GGCC	5 cut(s)	3, 1224, 1248, 1332, 2109
ApaLI	GTGCAC	1 cut(s)	1621
ApeKI	GCWGC	6 cut(s)	80, 512, 932, 1037, 2159, 2579
ApoI	RAATTY	4 cut(s)	289, 545, 814, 874
ArsI	GACNNNNNNTTYG	4 cut(s)	1393, 1425, 2493, 2525
AseI	ATTAAT	1 cut(s)	900
AsiGI	ACCGGT	1 cut(s)	1098
Asp700I	GAANNNNTTC	1 cut(s)	2099
AspS9I	GGNCC	6 cut(s)	1101, 1248, 2110, 2341, 2441, 2622
AsuHPI	GGTGA	3 cut(s)	115, 320, 1037
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	4 cut(s)	1101, 2341, 2441, 2622
AxyI	CCTNAGG	1 cut(s)	1696
BaeGI	GKGCMC	1 cut(s)	1625
BamHI	GGATCC	1 cut(s)	1489
BanII	GRGCYC	1 cut(s)	1167
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BauI	CACGAG	2 cut(s)	1531, 1962
BbsI	GAAGAC	3 cut(s)	565, 1913, 2187
Bbv12I	GWGCWC	2 cut(s)	1167, 1625
BbvI	GCAGC	6 cut(s)	67, 524, 919, 1024, 2146, 2566
BccI	CCATC	9 cut(s)	299, 685, 854, 1259, 1589, 2101, 2352, 2382, 2635
BclI	TGATCA	3 cut(s)	792, 1999, 2364
BcoDI	GTCTC	6 cut(s)	26, 124, 862, 955, 2172, 2318
BfaI	CTAG	6 cut(s)	252, 258, 383, 393, 1911, 2091
BfmI	CTRYAG	1 cut(s)	70
BglII	AGATCT	1 cut(s)	1983
BisI	GCNGC	6 cut(s)	81, 513, 933, 1038, 2160, 2580
BlsI	GCNGC	6 cut(s)	82, 514, 934, 1039, 2161, 2581
Bme18I	GGWCC	4 cut(s)	1101, 2341, 2441, 2622
BmgT120I	GGNCC	6 cut(s)	1101, 1248, 2110, 2341, 2441, 2622
BmiI	GGNNCC	4 cut(s)	128, 1249, 1491, 2442
BmrI	ACTGGG	1 cut(s)	2447
BmuI	ACTGGG	1 cut(s)	2447
BpiI	GAAGAC	3 cut(s)	565, 1913, 2187
Bpu10I	CCTNAGC	2 cut(s)	347, 2519
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	3 cut(s)	395, 1151, 1574
BsaAI	YACGTR	1 cut(s)	1835
BsaBI	GATNNNNATC	1 cut(s)	2369
BsaI	GGTCTC	2 cut(s)	124, 862
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	2 cut(s)	1007, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	1014, 2118, 2119
Bse118I	RCCGGY	1 cut(s)	1098
Bse1I	ACTGG	3 cut(s)	143, 890, 2442
Bse21I	CCTNAGG	1 cut(s)	1696
Bse3DI	GCAATG	2 cut(s)	442, 795
Bse8I	GATNNNNATC	1 cut(s)	2369
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	9 cut(s)	432, 514, 557, 1022, 1243, 1289, 1456, 2393, 2637
BseJI	GATNNNNATC	1 cut(s)	2369
BseLI	CCNNNNNNNGG	3 cut(s)	1014, 2118, 2119
BseMI	GCAATG	2 cut(s)	442, 795
BseMII	CTCAG	7 cut(s)	126, 338, 507, 1710, 2001, 2409, 2533
BseNI	ACTGG	3 cut(s)	143, 890, 2442
BseSI	GKGCMC	1 cut(s)	1625
BseXI	GCAGC	6 cut(s)	67, 524, 919, 1024, 2146, 2566
BseYI	CCCAGC	2 cut(s)	965, 2405
BsgI	GTGCAG	1 cut(s)	2565
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	5 cut(s)	5, 1226, 1250, 1334, 2111
BshTI	ACCGGT	1 cut(s)	1098
BsiHKAI	GWGCWC	2 cut(s)	1167, 1625
BsiSI	CCGG	4 cut(s)	1008, 1099, 1335, 1399
BslFI	GGGAC	1 cut(s)	2454
BslI	CCNNNNNNNGG	3 cut(s)	1014, 2118, 2119
BsmAI	GTCTC	6 cut(s)	26, 124, 862, 955, 2172, 2318
BsmFI	GGGAC	1 cut(s)	2454
BsmI	GAATGC	3 cut(s)	112, 1564, 2269
BsnI	GGCC	5 cut(s)	5, 1226, 1250, 1334, 2111
Bso31I	GGTCTC	2 cut(s)	124, 862
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	1167, 1625
Bsp1407I	TGTACA	2 cut(s)	1203, 1935
BspACI	CCGC	1 cut(s)	786
BspANI	GGCC	5 cut(s)	5, 1226, 1250, 1334, 2111
BspCNI	CTCAG	7 cut(s)	127, 339, 508, 1709, 2000, 2410, 2532
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	4 cut(s)	128, 1249, 1491, 2442
BspPI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
BspT104I	TTCGAA	1 cut(s)	637
BspTNI	GGTCTC	2 cut(s)	124, 862
BsrDI	GCAATG	2 cut(s)	442, 795
BsrFI	RCCGGY	1 cut(s)	1098
BsrGI	TGTACA	2 cut(s)	1203, 1935
BsrI	ACTGG	3 cut(s)	143, 890, 2442
BssAI	RCCGGY	1 cut(s)	1098
BssECI	CCNNGG	1 cut(s)	27
BssSI	CACGAG	2 cut(s)	1531, 1962
BssT1I	CCWWGG	1 cut(s)	27
Bst2BI	CACGAG	2 cut(s)	1531, 1962
Bst4CI	ACNGT	3 cut(s)	74, 1482, 2203
Bst6I	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
BstAUI	TGTACA	2 cut(s)	1203, 1935
BstBAI	YACGTR	1 cut(s)	1835
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	5 cut(s)	1224, 1320, 1601, 1756, 1774
BstDEI	CTNAG	9 cut(s)	135, 347, 352, 516, 627, 1696, 1987, 2418, 2519
BstF5I	GGATG	9 cut(s)	432, 514, 557, 1022, 1243, 1289, 1456, 2393, 2637
BstFNI	CGCG	1 cut(s)	483
BstMAI	GTCTC	6 cut(s)	26, 124, 862, 955, 2172, 2318
BstMWI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
BstNSI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
BstSFI	CTRYAG	1 cut(s)	70
BstSLI	GKGCMC	1 cut(s)	1625
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	6 cut(s)	67, 524, 919, 1024, 2146, 2566
BstV2I	GAAGAC	3 cut(s)	565, 1913, 2187
BstX2I	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
Bsu36I	CCTNAGG	1 cut(s)	1696
BsuRI	GGCC	5 cut(s)	5, 1226, 1250, 1334, 2111
BtsCI	GGATG	9 cut(s)	432, 514, 557, 1022, 1243, 1289, 1456, 2393, 2637
BtsI	GCAGTG	1 cut(s)	1438
BtsIMutI	CAGTG	2 cut(s)	1438, 1487
Cac8I	GCNNGC	5 cut(s)	1224, 1320, 1601, 1756, 1774
Cfr10I	RCCGGY	1 cut(s)	1098
Cfr13I	GGNCC	6 cut(s)	1101, 1248, 2110, 2341, 2441, 2622
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	7 cut(s)	1153, 1204, 1513, 1891, 1936, 2024, 2204
CspAI	ACCGGT	1 cut(s)	1098
CviQI	GTAC	7 cut(s)	1153, 1204, 1513, 1891, 1936, 2024, 2204
DdeI	CTNAG	9 cut(s)	135, 347, 352, 516, 627, 1696, 1987, 2418, 2519
DraI	TTTAAA	1 cut(s)	2221
Eam1104I	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
EarI	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
Ecl136II	GAGCTC	1 cut(s)	1165
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	2 cut(s)	124, 862
Eco47I	GGWCC	4 cut(s)	1101, 2341, 2441, 2622
Eco53kI	GAGCTC	1 cut(s)	1165
Eco57I	CTGAAG	1 cut(s)	1683
Eco81I	CCTNAGG	1 cut(s)	1696
EcoICRI	GAGCTC	1 cut(s)	1165
EcoO109I	RGGNCCY	1 cut(s)	2441
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	1167
ErhI	CCWWGG	1 cut(s)	27
FalI	AAGNNNNNCTT	8 cut(s)	2087, 2119, 2179, 2211, 2320, 2352, 2609, 2641
FaqI	GGGAC	1 cut(s)	2454
FauNDI	CATATG	2 cut(s)	1324, 2479
FbaI	TGATCA	3 cut(s)	792, 1999, 2364
FblI	GTMKAC	1 cut(s)	2247
Fnu4HI	GCNGC	6 cut(s)	81, 513, 933, 1038, 2160, 2580
FokI	GGATG	9 cut(s)	439, 521, 564, 1009, 1250, 1296, 1463, 2400, 2644
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	6 cut(s)	81, 513, 933, 1038, 2160, 2580
FspBI	CTAG	6 cut(s)	252, 258, 383, 393, 1911, 2091
GluI	GCNGC	6 cut(s)	81, 513, 933, 1038, 2160, 2580
GsaI	CCCAGC	2 cut(s)	969, 2409
HaeIII	GGCC	5 cut(s)	5, 1226, 1250, 1334, 2111
HapII	CCGG	4 cut(s)	1008, 1099, 1335, 1399
HgaI	GACGC	1 cut(s)	1043
HinfI	GANTC	5 cut(s)	41, 526, 1414, 1701, 1899
HpaII	CCGG	4 cut(s)	1008, 1099, 1335, 1399
HphI	GGTGA	3 cut(s)	115, 320, 1037
Hpy166II	GTNNAC	5 cut(s)	735, 1206, 1623, 2248, 2435
Hpy8I	GTNNAC	5 cut(s)	735, 1206, 1623, 2248, 2435
HpyAV	CCTTC	9 cut(s)	700, 1012, 1106, 1324, 1332, 1480, 2050, 2080, 2314
HpyCH4III	ACNGT	3 cut(s)	74, 1482, 2203
HpyCH4IV	ACGT	3 cut(s)	1386, 1834, 2014
HpyF10VI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
HpyF3I	CTNAG	9 cut(s)	135, 347, 352, 516, 627, 1696, 1987, 2418, 2519
HpySE526I	ACGT	3 cut(s)	1386, 1834, 2014
Ksp22I	TGATCA	3 cut(s)	792, 1999, 2364
LmnI	GCTCC	3 cut(s)	623, 962, 2290
Lsp1109I	GCAGC	6 cut(s)	67, 524, 919, 1024, 2146, 2566
MaeI	CTAG	6 cut(s)	252, 258, 383, 393, 1911, 2091
MaeII	ACGT	3 cut(s)	1386, 1834, 2014
MaeIII	GTNAC	4 cut(s)	538, 1564, 1830, 1915
MfeI	CAATTG	2 cut(s)	1939, 1974
MflI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
MhlI	GDGCHC	2 cut(s)	1167, 1625
MlyI	GAGTC	1 cut(s)	1423
MmeI	TCCRAC	2 cut(s)	692, 1051
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	2099
MseI	TTAA	7 cut(s)	114, 848, 900, 1523, 2081, 2220, 2472
MslI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	1008, 1099, 1335, 1399
MunI	CAATTG	2 cut(s)	1939, 1974
Mva1269I	GAATGC	3 cut(s)	112, 1564, 2269
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
NdeI	CATATG	2 cut(s)	1324, 2479
NlaIV	GGNNCC	4 cut(s)	128, 1249, 1491, 2442
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	1 cut(s)	1915
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
NspV	TTCGAA	1 cut(s)	637
PciI	ACATGT	1 cut(s)	1827
PctI	GAATGC	3 cut(s)	112, 1564, 2269
PdmI	GAANNNNTTC	1 cut(s)	2099
PfeI	GAWTC	4 cut(s)	41, 526, 1701, 1899
PinAI	ACCGGT	1 cut(s)	1098
PkrI	GCNGC	6 cut(s)	82, 514, 934, 1039, 2161, 2581
PleI	GAGTC	1 cut(s)	1422
PpsI	GAGTC	1 cut(s)	1422
Ppu21I	YACGTR	1 cut(s)	1835
PpuMI	RGGWCCY	1 cut(s)	2441
PscI	ACATGT	1 cut(s)	1827
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	1167
Psp5II	RGGWCCY	1 cut(s)	2441
PspFI	CCCAGC	2 cut(s)	965, 2405
PspN4I	GGNNCC	4 cut(s)	128, 1249, 1491, 2442
PspPI	GGNCC	6 cut(s)	1101, 1248, 2110, 2341, 2441, 2622
PspPPI	RGGWCCY	1 cut(s)	2441
PsuI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	7 cut(s)	1154, 1205, 1514, 1892, 1937, 2025, 2205
RsaNI	GTAC	7 cut(s)	1153, 1204, 1513, 1891, 1936, 2024, 2204
RseI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
SacI	GAGCTC	1 cut(s)	1167
SaqAI	TTAA	7 cut(s)	114, 848, 900, 1523, 2081, 2220, 2472
SatI	GCNGC	6 cut(s)	81, 513, 933, 1038, 2160, 2580
Sau96I	GGNCC	6 cut(s)	1101, 1248, 2110, 2341, 2441, 2622
SchI	GAGTC	1 cut(s)	1423
SduI	GDGCHC	2 cut(s)	1167, 1625
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	4 cut(s)	1101, 2341, 2441, 2622
SmiMI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
SmlI	CTYRAG	3 cut(s)	410, 1166, 1553
SmoI	CTYRAG	3 cut(s)	410, 1166, 1553
SsiI	CCGC	1 cut(s)	786
SspI	AATATT	2 cut(s)	1292, 2603
SspMI	CTAG	6 cut(s)	252, 258, 383, 393, 1911, 2091
SstI	GAGCTC	1 cut(s)	1167
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	3 cut(s)	74, 1482, 2203
TaiI	ACGT	3 cut(s)	1389, 1837, 2017
TaqI	TCGA	6 cut(s)	637, 745, 1412, 1683, 1897, 2499
TaqII	GACCGA	1 cut(s)	886
TatI	WGTACW	3 cut(s)	1203, 1890, 1935
TfiI	GAWTC	4 cut(s)	41, 526, 1701, 1899
Tru1I	TTAA	7 cut(s)	114, 848, 900, 1523, 2081, 2220, 2472
Tru9I	TTAA	7 cut(s)	114, 848, 900, 1523, 2081, 2220, 2472
TscAI	CASTG	2 cut(s)	1445, 1487
TseFI	GTSAC	1 cut(s)	1915
TseI	GCWGC	6 cut(s)	80, 512, 932, 1037, 2159, 2579
Tsp45I	GTSAC	1 cut(s)	1915
TspGWI	ACGGA	2 cut(s)	1835, 2501
TspRI	CASTG	2 cut(s)	1445, 1487
VneI	GTGCAC	1 cut(s)	1621
VpaK11BI	GGWCC	4 cut(s)	1101, 2341, 2441, 2622
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	4 cut(s)	289, 545, 814, 874
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
XmiI	GTMKAC	1 cut(s)	2247
XmnI	GAANNNNTTC	1 cut(s)	2099
XspI	CTAG	6 cut(s)	252, 258, 383, 393, 1911, 2091
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.