Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008510.1

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

10 .. 948

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008510.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgattgcctatggtattgctgtaagaatgtatgtcaaagctggctctttggaagatgcttgctctgttctggacacaatggacaaacaggagggaatagttccagacatctacatgttacgtgatatgttccgtatttatcaaaaatgtggcagacttgataagttgaaagatttgtactatcgaatcttgaagactagagtgacttgggatcaggaaatgtacaattgtgtcataaactgctgttctcgtgctttgccaattgatgagatctcagagatgtttgatcagatgcttcaacgtgggtttgtacctaataccataaccttcaatgtcatgcttgatgtatatgggaaagcaaagctcttaaagaaggctaggaagttgttcttgatggcccagaaatgggatctggttgatacaatctcttacaatactattatagctgcgtatgggagaaacagagacttcaaaagcatgtcttcaacggtacgagagatgcagtttaaaggattttcagtttcccttgaagtctacaatagtatgctgaatgcttatgggaaagaaagccaaatggagcggttcagaagcgttttgcaaagaatgaaggagacaagctgtgcttcggaccatcacacctacaacattatgatcaatatctatggagagcaaggatggattgatgaagttgctggggtgctgactgagttgaaagaatgtggactgagacctgatctgtgtagctataacacattgattaaggcatatggaattgcaggaatggtcgaagatgctgtccgtttgctcagggaaatgagagataatggtatagagcctgataagattacatacatcaatctgattgctgcactacgaaaaaatgatgaatatttggaggctgtaaagtggtccttgtggatgaagcagatgggattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

312

Amino Acids

36.24

Weight (kDa)

8.0

Isoelectric Point (pI)

29.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	580
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	2 cut(s)	219, 417
AfaI	GTAC	4 cut(s)	179, 224, 312, 492
AfiI	CCNNNNNNNGG	2 cut(s)	405, 406
AflIII	ACRYGT	1 cut(s)	114
AgsI	TTSAA	8 cut(s)	169, 193, 299, 331, 472, 486, 530, 712
AluBI	AGCT	5 cut(s)	41, 364, 446, 618, 744
AluI	AGCT	5 cut(s)	41, 364, 446, 618, 744
Alw26I	GTCTC	3 cut(s)	459, 605, 721
AlwI	GGATC	2 cut(s)	219, 417
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	2 cut(s)	446, 866
ArsI	GACNNNNNNTTYG	2 cut(s)	780, 812
Asp700I	GAANNNNTTC	1 cut(s)	386
AspS9I	GGNCC	3 cut(s)	397, 628, 909
AvaII	GGWCC	2 cut(s)	628, 909
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	200, 474
BbvI	GCAGC	2 cut(s)	433, 853
BccI	CCATC	4 cut(s)	388, 639, 669, 922
BclI	TGATCA	2 cut(s)	286, 651
BcoDI	GTCTC	3 cut(s)	459, 605, 721
BfaI	CTAG	2 cut(s)	198, 378
BglII	AGATCT	1 cut(s)	270
BisI	GCNGC	2 cut(s)	447, 867
BlsI	GCNGC	2 cut(s)	448, 868
Bme18I	GGWCC	2 cut(s)	628, 909
BmgT120I	GGNCC	3 cut(s)	397, 628, 909
BmsI	GCATC	4 cut(s)	46, 282, 489, 781
BpiI	GAAGAC	2 cut(s)	200, 474
Bpu10I	CCTNAGC	1 cut(s)	806
BsaAI	YACGTR	1 cut(s)	122
BsaBI	GATNNNNATC	1 cut(s)	656
BsaI	GGTCTC	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	405, 406
Bse8I	GATNNNNATC	1 cut(s)	656
BseGI	GGATG	2 cut(s)	680, 924
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	2 cut(s)	405, 406
BseMII	CTCAG	4 cut(s)	288, 696, 716, 820
BseXI	GCAGC	2 cut(s)	433, 853
BseYI	CCCAGC	1 cut(s)	692
BsgI	GTGCAG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	405, 406
BsmAI	GTCTC	3 cut(s)	459, 605, 721
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	721
Bsp1407I	TGTACA	1 cut(s)	222
Bsp143I	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
BspACI	CCGC	1 cut(s)	580
BspANI	GGCC	1 cut(s)	398
BspCNI	CTCAG	4 cut(s)	287, 697, 717, 819
BspPI	GGATC	2 cut(s)	219, 417
BspTNI	GGTCTC	1 cut(s)	721
BsrBI	CCGCTC	1 cut(s)	580
BsrGI	TGTACA	1 cut(s)	222
BssMI	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	1 cut(s)	490
BstAUI	TGTACA	1 cut(s)	222
BstBAI	YACGTR	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	43, 61
BstDEI	CTNAG	4 cut(s)	274, 705, 725, 806
BstF5I	GGATG	2 cut(s)	680, 924
BstKTI	GATC	6 cut(s)	214, 273, 289, 412, 654, 736
BstMAI	GTCTC	3 cut(s)	459, 605, 721
BstMBI	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
BstNSI	RCATGY	2 cut(s)	118, 481
BstV1I	GCAGC	2 cut(s)	433, 853
BstV2I	GAAGAC	2 cut(s)	200, 474
BstX2I	RGATCY	2 cut(s)	270, 409
BstYI	RGATCY	2 cut(s)	270, 409
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	680, 924
Cac8I	GCNNGC	2 cut(s)	43, 61
Cfr13I	GGNCC	3 cut(s)	397, 628, 909
Csp6I	GTAC	4 cut(s)	178, 223, 311, 491
CviAII	CATG	3 cut(s)	115, 337, 478
CviQI	GTAC	4 cut(s)	178, 223, 311, 491
DdeI	CTNAG	4 cut(s)	274, 705, 725, 806
DpnI	GATC	6 cut(s)	213, 272, 288, 411, 653, 735
DpnII	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
DraI	TTTAAA	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	628, 909
FaeI	CATG	3 cut(s)	118, 340, 481
FalI	AAGNNNNNCTT	8 cut(s)	374, 406, 466, 498, 607, 639, 896, 928
FatI	CATG	3 cut(s)	114, 336, 477
FauNDI	CATATG	1 cut(s)	766
FbaI	TGATCA	2 cut(s)	286, 651
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	2 cut(s)	447, 867
FokI	GGATG	2 cut(s)	687, 931
Fsp4HI	GCNGC	2 cut(s)	447, 867
FspBI	CTAG	2 cut(s)	198, 378
GluI	GCNGC	2 cut(s)	447, 867
GsaI	CCCAGC	1 cut(s)	696
HaeIII	GGCC	1 cut(s)	398
Hin1II	CATG	3 cut(s)	118, 340, 481
HinfI	GANTC	1 cut(s)	186
Hpy166II	GTNNAC	2 cut(s)	535, 722
Hpy188I	TCNGA	5 cut(s)	277, 291, 587, 628, 861
Hpy188III	TCNNGA	5 cut(s)	71, 104, 190, 215, 391
Hpy8I	GTNNAC	2 cut(s)	535, 722
HpyAV	CCTTC	3 cut(s)	337, 367, 601
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	121, 301
HpyCH4V	TGCA	4 cut(s)	502, 598, 776, 869
HpyF3I	CTNAG	4 cut(s)	274, 705, 725, 806
HpySE526I	ACGT	2 cut(s)	121, 301
Hsp92II	CATG	3 cut(s)	118, 340, 481
Ksp22I	TGATCA	2 cut(s)	286, 651
Kzo9I	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	2 cut(s)	433, 853
LweI	GCATC	4 cut(s)	46, 282, 489, 781
MaeI	CTAG	2 cut(s)	198, 378
MaeII	ACGT	2 cut(s)	121, 301
MaeIII	GTNAC	2 cut(s)	117, 202
MalI	GATC	6 cut(s)	213, 272, 288, 411, 653, 735
MbiI	CCGCTC	1 cut(s)	580
MboI	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
MboII	GAAGA	4 cut(s)	65, 205, 474, 800
MfeI	CAATTG	2 cut(s)	226, 261
MflI	RGATCY	2 cut(s)	270, 409
MluCI	AATT	3 cut(s)	226, 261, 771
MnlI	CCTC	2 cut(s)	85, 889
MroXI	GAANNNNTTC	1 cut(s)	386
MseI	TTAA	3 cut(s)	368, 507, 759
MslI	CAYNNNNRTG	1 cut(s)	113
MunI	CAATTG	2 cut(s)	226, 261
Mva1269I	GAATGC	1 cut(s)	556
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
NlaIII	CATG	3 cut(s)	118, 340, 481
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	2 cut(s)	118, 481
PciI	ACATGT	1 cut(s)	114
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	386
PfeI	GAWTC	1 cut(s)	186
PkrI	GCNGC	2 cut(s)	448, 868
Ppu21I	YACGTR	1 cut(s)	122
PscI	ACATGT	1 cut(s)	114
PspFI	CCCAGC	1 cut(s)	692
PspPI	GGNCC	3 cut(s)	397, 628, 909
PsuI	RGATCY	2 cut(s)	270, 409
RsaI	GTAC	4 cut(s)	179, 224, 312, 492
RsaNI	GTAC	4 cut(s)	178, 223, 311, 491
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	3 cut(s)	368, 507, 759
SatI	GCNGC	2 cut(s)	447, 867
Sau3AI	GATC	6 cut(s)	211, 270, 286, 409, 651, 733
Sau96I	GGNCC	3 cut(s)	397, 628, 909
SfaNI	GCATC	4 cut(s)	46, 282, 489, 781
SinI	GGWCC	2 cut(s)	628, 909
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	3 cut(s)	226, 261, 771
SsiI	CCGC	1 cut(s)	580
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	2 cut(s)	198, 378
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	124, 304
TaqI	TCGA	2 cut(s)	184, 786
TasI	AATT	3 cut(s)	226, 261, 771
TatI	WGTACW	2 cut(s)	177, 222
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	3 cut(s)	368, 507, 759
Tru9I	TTAA	3 cut(s)	368, 507, 759
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	446, 866
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	4 cut(s)	620, 699, 900, 935
TspGWI	ACGGA	2 cut(s)	122, 788
VpaK11BI	GGWCC	2 cut(s)	628, 909
XceI	RCATGY	2 cut(s)	118, 481
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	386
XspI	CTAG	2 cut(s)	198, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.