Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Forward (+)

512414 .. 515065

Gene Structure 2652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGCCTCACTGCAATTCCCCATTTCTTTGGAGACATTAGATTCTTCCAAAAGGTTCAATTCTTTTTGCTACAGTAGAGCCGCTTCTGTTGTTTTGAATAGGGTGAATGCCATTAAGGTCTCTCGGTTCCAATCTGAGTTGCCAGTAGATGAGAGTTCTGTTGAGCAAAACCCAGATTGTTCAAGACCTGAAATTGGTAAGGGAAGTAGTGGCAGAAAGAAAGTGAGTAAGAGAGAAGTGGGTTTGAGGTCTAGTTCAAGAAAGAGTAAGTGGGTTAGGAAATTGGAGAATTTGTTTGTGAATGATGGTGAGTTTGATGTTGATTACTCTGTTATTAAGTCTGACCTTAGCTTAGAGCATTGTAATGATATTTTGAAGAGGCTAGAGAGGTCTAGTGATGTCAAAACTCTCAAGTTTTTTGAGTGGATGAGAAGCAATGGGAAACTCAAATGCAATGTGAGTGCTTTTAGCTCGGTTTTTCGCGTGTTGGGTAGGAGAGAAAATTGGGATGCAGCTGAGAAATTGATTCAGGAAATGGTTACTGAATTTGGATGTGAGCTGAATTATCAGGTCTTCAATACCCTTATTTATGCATGTAGTAAATTGGGGCGTGTGGAGTTGGGAGCCAAGTGGTTTCGAATGATGCTGGAACATGGAGTCCAGCCGAATGTTGCGACATTTGGAATGCTGATGGGGCTTTACCAGAAGGGTTGGAATGTTGAGGAAGCCGAGTTCACTTTTTCTCGAATGAGGAACTTTGGGACTGTATGTCAATCTGCTTACTCGGCAATGATCACAATTTATACCCGTATGAATTTGTATGACAGAGCAGAAGAGATCATTGGCTTAATGAAAGAAGATGGAGTGAGACCAAATTTGGATAACTGGTTGGTAATGATTAATGCTTATTGTCAGCAGGGAAAAGTAGAAGCTGCTGAACTAGTATTAGGCTCCATGAAAGAAGCTCGGTTTTCTCCAAACATTGTTGCATACAATACATTGATAACCGGATATGGGAAGGCATCTAAAATGGACGCTGCTCATCACCTATTTCTAGGCATTAAGAAAGTCGGATTAGAGCCTGATGAAACAACTTACCGTTCCATGATTGAAGGTTGGGGTAGAGCTGACAATTATAAGGAAGCAGATTGGTACTACAGAGAGCTCAAGCGTTTAGGCTACAAACCTAATTCGTCTAACCTGTACACGCTAATAAACTTGCAAGCCAAACATGAGGATGAAGAGGGGGCCATCAGAACTCTCGATGATATGCAGAAGATAGGATGCCAATATTCATCAATGCTTGGTACTCTTCTGCAAGCATATGAGAAGGCTGGAAGGATTGATAAAGTGCCTTTCCTTTTGAGAGGTTCTTTATATCAACACGTTCTTGTCAGCCGGACTTCTTGTTCGAGTCTTGTCATGGCTTATGTGAAACACTGCTTGGTGGATGATACTATGAAAGTGTTGAGGGAAAAACAGTGGAAGGATCCACATTTTGAAGATAACTTGTACCATTTGTTAATTTGCTCGTGTAAAGAGTTGGGTCATCTTGAGAATGCTGTTATAATATACAATCAAATGCCCAGACATGATGGCAAGCCAAACATGCACATCATGTGCACAATGATTGACATTTACAGCATCATGGATCTCTTCTCTGAAGCGGAGAAAGTTTATGTCGAGTTGAAATCCTCAGGAATCGCCTTGGACATGATTGCCTATGGTATTGCTGTAAGAATGTATGTCAAAGCTGGCTCTTTGGAAGATGCTTGCTCTGTTCTGGACACAATGGACAAACAGGAGGGAATAGTTCCAGACATCTACATGTTACGTGATATGTTCCGTATTTATCAAAAATGTGGCAGACTTGATAAGTTGAAAGATTTATACTATCGAATCTTGAAGACTAGAGTGACTTGGGATCAGGAAATGTACAATTGTGTCATAAACTGCTGTTCTCGTGCTTTGCCAATTGATGAGATCTCGGAGATGTTTGATCAGATGCTTCAACGTGGGTTTGTACCTAATACCATAACCTTCAATGTCATGCTTGATGTATATGGGAAAGCAAAGCTCTTAAAGAAGGCTAGGAAGTTGTTCTTGATGGCCCAGAAATGGGATCTTGTTGATACAATCTCTTACAATACTATTATAGCTGCGTATGGGAGAAACAGAGACTTCAAAAGCATGTCTTCAACGGTACGAGAGATGCAGTTTAAAGGATTTTCAGTTTCCCTTGAAGTCTACAATAGTATGCTGAATGCTTATGGGAAAGAAAGCCAAATGGAGCGGTTCAGAAGTGTTTTGCAAAGAATGAAGGAGACAAGCTGTGCTTCAGACCATCACACCTACAACGTTATGATCAATATCTATGGAGAGCAAGGATGGATTGAAGAAGTTGCTGGGGTGCTGACTGAGTTGAAAGAATGTGGACTGGGACCTGATCTGTGTAGCTATAACACATTGATTAAGGCATATGGAATTGCAGGAATGGTTGAAGATGCTGTCCGTTTGCTCAGGGAAATGAGAGATAATGGTATAGAGCCTGATAAGATTACATACATCAATCTGATAGCTGCGCTGCGAAAAAATGATGAATATTTGGAGGCTGTAAAGTGGTCCTTGTGGATGAAGCAGATGGGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

884

Amino Acids

101.55

Weight (kDa)

8.03

Isoelectric Point (pI)

32.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	191 - 231	2.1e-07	PPR repeat family
PPR_3	PF13812	299 - 340	2.7e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 372	4.3e-13	PPR repeat family
PPR_2	PF13041	645 - 688	2.7e-09	PPR repeat family
PPR_3	PF13812	735 - 794	6.4e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	749 - 790	5.9e-09	PPR repeat family
TPR_24	PF23276	803 - 871	8.3e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	812 - 844	4.4e-09	PPR repeat
PPR_2	PF13041	815 - 862	2.1e-13	PPR repeat family
PPR	PF01535	819 - 848	2.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1137, 1568
AccBSI	CCGCTC	1 cut(s)	2293
AccI	GTMKAC	1 cut(s)	2247
AccII	CGCG	1 cut(s)	483
AciI	CCGC	3 cut(s)	81, 1667, 2293
AclI	AACGTT	1 cut(s)	2358
AclWI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
AcsI	RAATTY	4 cut(s)	289, 545, 814, 874
AcuI	CTGAAG	2 cut(s)	1683, 2322
AfaI	GTAC	7 cut(s)	1154, 1205, 1309, 1514, 1937, 2025, 2205
AfiI	CCNNNNNNNGG	4 cut(s)	194, 1014, 2118, 2119
AflIII	ACRYGT	2 cut(s)	1384, 1827
AhdI	GACNNNNNGTC	1 cut(s)	768
AhlI	ACTAGT	1 cut(s)	940
AjuI	GAANNNNNNNTTGG	4 cut(s)	825, 857, 1427, 1459
AloI	GAACNNNNNNTCC	6 cut(s)	642, 674, 716, 748, 1393, 1425
Alw21I	GWGCWC	2 cut(s)	1167, 1625
Alw26I	GTCTC	5 cut(s)	26, 124, 862, 2172, 2318
Alw44I	GTGCAC	1 cut(s)	1621
AlwI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
AoxI	GGCC	3 cut(s)	3, 1248, 2109
ApaLI	GTGCAC	1 cut(s)	1621
ApeKI	GCWGC	6 cut(s)	512, 932, 1037, 2159, 2579, 2584
ApoI	RAATTY	4 cut(s)	289, 545, 814, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	1393, 1425
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	1 cut(s)	2099
AspLEI	GCGC	1 cut(s)	2584
AspS9I	GGNCC	4 cut(s)	1248, 2110, 2441, 2622
AsuHPI	GGTGA	3 cut(s)	115, 320, 1037
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	2 cut(s)	2441, 2622
AxyI	CCTNAGG	1 cut(s)	1696
BaeGI	GKGCMC	1 cut(s)	1625
BamHI	GGATCC	1 cut(s)	1489
BanII	GRGCYC	1 cut(s)	1167
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BauI	CACGAG	2 cut(s)	1531, 1962
BbsI	GAAGAC	3 cut(s)	565, 1913, 2187
Bbv12I	GWGCWC	2 cut(s)	1167, 1625
BbvI	GCAGC	6 cut(s)	524, 919, 1024, 2146, 2566, 2571
BccI	CCATC	9 cut(s)	299, 685, 854, 1259, 1589, 2101, 2352, 2382, 2635
BclI	TGATCA	3 cut(s)	792, 1999, 2364
BcoDI	GTCTC	5 cut(s)	26, 124, 862, 2172, 2318
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	7 cut(s)	252, 383, 393, 941, 1055, 1911, 2091
BfmI	CTRYAG	2 cut(s)	70, 1156
BglII	AGATCT	1 cut(s)	1983
BisI	GCNGC	7 cut(s)	81, 513, 933, 1038, 2160, 2580, 2585
BlsI	GCNGC	7 cut(s)	82, 514, 934, 1039, 2161, 2581, 2586
Bme18I	GGWCC	2 cut(s)	2441, 2622
BmeRI	GACNNNNNGTC	1 cut(s)	768
BmgT120I	GGNCC	4 cut(s)	1248, 2110, 2441, 2622
BmiI	GGNNCC	6 cut(s)	128, 625, 952, 1249, 1491, 2442
BmrI	ACTGGG	1 cut(s)	2447
BmsI	GCATC	9 cut(s)	499, 633, 1031, 1274, 1653, 1759, 1995, 2202, 2494
BmuI	ACTGGG	1 cut(s)	2447
BpiI	GAAGAC	3 cut(s)	565, 1913, 2187
Bpu10I	CCTNAGC	2 cut(s)	347, 2519
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	3 cut(s)	395, 1151, 1574
BsaAI	YACGTR	1 cut(s)	1835
BsaBI	GATNNNNATC	1 cut(s)	2369
BsaI	GGTCTC	2 cut(s)	124, 862
BsaJI	CCNNGG	1 cut(s)	1707
BsaWI	WCCGGW	1 cut(s)	1007
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	4 cut(s)	194, 1014, 2118, 2119
Bse1I	ACTGG	3 cut(s)	143, 890, 2442
Bse21I	CCTNAGG	1 cut(s)	1696
Bse3DI	GCAATG	3 cut(s)	442, 460, 795
Bse8I	GATNNNNATC	1 cut(s)	2369
BseDI	CCNNGG	1 cut(s)	1707
BseGI	GGATG	8 cut(s)	432, 514, 557, 1243, 1289, 1456, 2393, 2637
BseJI	GATNNNNATC	1 cut(s)	2369
BseLI	CCNNNNNNNGG	4 cut(s)	194, 1014, 2118, 2119
BseMI	GCAATG	3 cut(s)	442, 460, 795
BseMII	CTCAG	5 cut(s)	126, 507, 1710, 2409, 2533
BseNI	ACTGG	3 cut(s)	143, 890, 2442
BseSI	GKGCMC	1 cut(s)	1625
BseXI	GCAGC	6 cut(s)	524, 919, 1024, 2146, 2566, 2571
BseYI	CCCAGC	1 cut(s)	2405
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	3 cut(s)	5, 1250, 2111
BsiHKAI	GWGCWC	2 cut(s)	1167, 1625
BsiSI	CCGG	2 cut(s)	1008, 1399
BslFI	GGGAC	2 cut(s)	775, 2454
BslI	CCNNNNNNNGG	4 cut(s)	194, 1014, 2118, 2119
BsmAI	GTCTC	5 cut(s)	26, 124, 862, 2172, 2318
BsmFI	GGGAC	2 cut(s)	775, 2454
BsmI	GAATGC	4 cut(s)	112, 690, 1564, 2269
BsnI	GGCC	3 cut(s)	5, 1250, 2111
Bso31I	GGTCTC	2 cut(s)	124, 862
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	1167, 1625
Bsp1407I	TGTACA	2 cut(s)	1203, 1935
BspACI	CCGC	3 cut(s)	81, 1667, 2293
BspANI	GGCC	3 cut(s)	5, 1250, 2111
BspCNI	CTCAG	5 cut(s)	127, 508, 1709, 2410, 2532
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	6 cut(s)	128, 625, 952, 1249, 1491, 2442
BspPI	GGATC	5 cut(s)	1484, 1497, 1659, 1932, 2130
BspT104I	TTCGAA	1 cut(s)	637
BspTNI	GGTCTC	2 cut(s)	124, 862
BsrBI	CCGCTC	1 cut(s)	2293
BsrDI	GCAATG	3 cut(s)	442, 460, 795
BsrGI	TGTACA	2 cut(s)	1203, 1935
BsrI	ACTGG	3 cut(s)	143, 890, 2442
BssECI	CCNNGG	1 cut(s)	1707
BssSI	CACGAG	2 cut(s)	1531, 1962
BssT1I	CCWWGG	1 cut(s)	1707
Bst2BI	CACGAG	2 cut(s)	1531, 1962
Bst4CI	ACNGT	5 cut(s)	74, 766, 1100, 1482, 2203
Bst6I	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
BstAUI	TGTACA	2 cut(s)	1203, 1935
BstBAI	YACGTR	1 cut(s)	1835
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	5 cut(s)	1224, 1320, 1601, 1756, 1774
BstDEI	CTNAG	7 cut(s)	135, 347, 352, 516, 1696, 2418, 2519
BstF5I	GGATG	8 cut(s)	432, 514, 557, 1243, 1289, 1456, 2393, 2637
BstFNI	CGCG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	2584
BstMAI	GTCTC	5 cut(s)	26, 124, 862, 2172, 2318
BstMWI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
BstNSI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
BstSFI	CTRYAG	2 cut(s)	70, 1156
BstSLI	GKGCMC	1 cut(s)	1625
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	6 cut(s)	524, 919, 1024, 2146, 2566, 2571
BstV2I	GAAGAC	3 cut(s)	565, 1913, 2187
BstX2I	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
Bsu36I	CCTNAGG	1 cut(s)	1696
BsuRI	GGCC	3 cut(s)	5, 1250, 2111
BtsCI	GGATG	8 cut(s)	432, 514, 557, 1243, 1289, 1456, 2393, 2637
BtsI	GCAGTG	2 cut(s)	8, 1438
BtsIMutI	CAGTG	3 cut(s)	8, 1438, 1487
Cac8I	GCNNGC	5 cut(s)	1224, 1320, 1601, 1756, 1774
CfoI	GCGC	1 cut(s)	2584
Cfr13I	GGNCC	4 cut(s)	1248, 2110, 2441, 2622
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	7 cut(s)	1153, 1204, 1308, 1513, 1936, 2024, 2204
CviQI	GTAC	7 cut(s)	1153, 1204, 1308, 1513, 1936, 2024, 2204
DdeI	CTNAG	7 cut(s)	135, 347, 352, 516, 1696, 2418, 2519
DraI	TTTAAA	1 cut(s)	2221
DriI	GACNNNNNGTC	1 cut(s)	768
Eam1104I	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
Eam1105I	GACNNNNNGTC	1 cut(s)	768
EarI	CTCTTC	5 cut(s)	371, 828, 1236, 1317, 1661
Ecl136II	GAGCTC	1 cut(s)	1165
Eco130I	CCWWGG	1 cut(s)	1707
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	2 cut(s)	124, 862
Eco47I	GGWCC	2 cut(s)	2441, 2622
Eco53kI	GAGCTC	1 cut(s)	1165
Eco57I	CTGAAG	2 cut(s)	1683, 2322
Eco81I	CCTNAGG	1 cut(s)	1696
EcoICRI	GAGCTC	1 cut(s)	1165
EcoO109I	RGGNCCY	1 cut(s)	2441
EcoT14I	CCWWGG	1 cut(s)	1707
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	1167
ErhI	CCWWGG	1 cut(s)	1707
FalI	AAGNNNNNCTT	8 cut(s)	2087, 2119, 2179, 2211, 2320, 2352, 2609, 2641
FaqI	GGGAC	2 cut(s)	775, 2454
FauNDI	CATATG	2 cut(s)	1324, 2479
FbaI	TGATCA	3 cut(s)	792, 1999, 2364
FblI	GTMKAC	1 cut(s)	2247
Fnu4HI	GCNGC	7 cut(s)	81, 513, 933, 1038, 2160, 2580, 2585
FokI	GGATG	8 cut(s)	439, 521, 564, 1250, 1296, 1463, 2400, 2644
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	7 cut(s)	81, 513, 933, 1038, 2160, 2580, 2585
FspBI	CTAG	7 cut(s)	252, 383, 393, 941, 1055, 1911, 2091
GlaI	GCGC	1 cut(s)	2583
GluI	GCNGC	7 cut(s)	81, 513, 933, 1038, 2160, 2580, 2585
GsaI	CCCAGC	1 cut(s)	2409
HaeIII	GGCC	3 cut(s)	5, 1250, 2111
HapII	CCGG	2 cut(s)	1008, 1399
HgaI	GACGC	1 cut(s)	1043
HhaI	GCGC	1 cut(s)	2584
Hin6I	GCGC	1 cut(s)	2582
HinP1I	GCGC	1 cut(s)	2582
HinfI	GANTC	6 cut(s)	41, 526, 657, 1414, 1701, 1899
HpaII	CCGG	2 cut(s)	1008, 1399
HphI	GGTGA	3 cut(s)	115, 320, 1037
Hpy166II	GTNNAC	5 cut(s)	735, 1206, 1623, 2248, 2435
Hpy8I	GTNNAC	5 cut(s)	735, 1206, 1623, 2248, 2435
HpyAV	CCTTC	9 cut(s)	700, 1012, 1106, 1324, 1332, 1480, 2050, 2080, 2314
HpyCH4III	ACNGT	5 cut(s)	74, 766, 1100, 1482, 2203
HpyCH4IV	ACGT	4 cut(s)	1386, 1834, 2014, 2358
HpyF10VI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
HpyF3I	CTNAG	7 cut(s)	135, 347, 352, 516, 1696, 2418, 2519
HpySE526I	ACGT	4 cut(s)	1386, 1834, 2014, 2358
HspAI	GCGC	1 cut(s)	2582
Ksp22I	TGATCA	3 cut(s)	792, 1999, 2364
LmnI	GCTCC	3 cut(s)	623, 956, 2290
Lsp1109I	GCAGC	6 cut(s)	524, 919, 1024, 2146, 2566, 2571
LweI	GCATC	9 cut(s)	499, 633, 1031, 1274, 1653, 1759, 1995, 2202, 2494
MaeI	CTAG	7 cut(s)	252, 383, 393, 941, 1055, 1911, 2091
MaeII	ACGT	4 cut(s)	1386, 1834, 2014, 2358
MaeIII	GTNAC	3 cut(s)	538, 1830, 1915
MbiI	CCGCTC	1 cut(s)	2293
MfeI	CAATTG	2 cut(s)	1939, 1974
MflI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
MhlI	GDGCHC	2 cut(s)	1167, 1625
MlyI	GAGTC	2 cut(s)	666, 1423
MmeI	TCCRAC	2 cut(s)	692, 1051
Mph1103I	ATGCAT	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	2099
MseI	TTAA	9 cut(s)	114, 336, 848, 900, 1062, 1523, 2081, 2220, 2472
MslI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	1008, 1399
MunI	CAATTG	2 cut(s)	1939, 1974
Mva1269I	GAATGC	4 cut(s)	112, 690, 1564, 2269
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	694, 785, 1609
NdeI	CATATG	2 cut(s)	1324, 2479
NlaIV	GGNNCC	6 cut(s)	128, 625, 952, 1249, 1491, 2442
NmeAIII	GCCGAG	2 cut(s)	754, 764
NmuCI	GTSAC	1 cut(s)	1915
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
NspV	TTCGAA	1 cut(s)	637
PciI	ACATGT	1 cut(s)	1827
PctI	GAATGC	4 cut(s)	112, 690, 1564, 2269
PdmI	GAANNNNTTC	1 cut(s)	2099
PfeI	GAWTC	4 cut(s)	41, 526, 1701, 1899
PkrI	GCNGC	7 cut(s)	82, 514, 934, 1039, 2161, 2581, 2586
PleI	GAGTC	2 cut(s)	665, 1422
PpsI	GAGTC	2 cut(s)	665, 1422
Ppu21I	YACGTR	1 cut(s)	1835
PpuMI	RGGWCCY	1 cut(s)	2441
PscI	ACATGT	1 cut(s)	1827
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	2 cut(s)	1137, 1568
Psp124BI	GAGCTC	1 cut(s)	1167
Psp1406I	AACGTT	1 cut(s)	2358
Psp5II	RGGWCCY	1 cut(s)	2441
PspFI	CCCAGC	1 cut(s)	2405
PspN4I	GGNNCC	6 cut(s)	128, 625, 952, 1249, 1491, 2442
PspPI	GGNCC	4 cut(s)	1248, 2110, 2441, 2622
PspPPI	RGGWCCY	1 cut(s)	2441
PsuI	RGATCY	4 cut(s)	1489, 1651, 1983, 2122
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	7 cut(s)	1154, 1205, 1309, 1514, 1937, 2025, 2205
RsaNI	GTAC	7 cut(s)	1153, 1204, 1308, 1513, 1936, 2024, 2204
RseI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
SacI	GAGCTC	1 cut(s)	1167
SaqAI	TTAA	9 cut(s)	114, 336, 848, 900, 1062, 1523, 2081, 2220, 2472
SatI	GCNGC	7 cut(s)	81, 513, 933, 1038, 2160, 2580, 2585
Sau96I	GGNCC	4 cut(s)	1248, 2110, 2441, 2622
SchI	GAGTC	2 cut(s)	666, 1423
SduI	GDGCHC	2 cut(s)	1167, 1625
SfaNI	GCATC	9 cut(s)	499, 633, 1031, 1274, 1653, 1759, 1995, 2202, 2494
SfcI	CTRYAG	2 cut(s)	70, 1156
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	2441, 2622
SmiMI	CAYNNNNRTG	3 cut(s)	363, 1236, 1826
SmlI	CTYRAG	3 cut(s)	410, 1166, 1553
SmoI	CTYRAG	3 cut(s)	410, 1166, 1553
SpeI	ACTAGT	1 cut(s)	940
SsiI	CCGC	3 cut(s)	81, 1667, 2293
SspI	AATATT	2 cut(s)	1292, 2603
SspMI	CTAG	7 cut(s)	252, 383, 393, 941, 1055, 1911, 2091
SstI	GAGCTC	1 cut(s)	1167
StyI	CCWWGG	1 cut(s)	1707
TaaI	ACNGT	5 cut(s)	74, 766, 1100, 1482, 2203
TaiI	ACGT	4 cut(s)	1389, 1837, 2017, 2361
TaqI	TCGA	6 cut(s)	637, 745, 1263, 1412, 1683, 1897
TatI	WGTACW	2 cut(s)	1203, 1935
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	4 cut(s)	41, 526, 1701, 1899
Tru1I	TTAA	9 cut(s)	114, 336, 848, 900, 1062, 1523, 2081, 2220, 2472
Tru9I	TTAA	9 cut(s)	114, 336, 848, 900, 1062, 1523, 2081, 2220, 2472
TscAI	CASTG	3 cut(s)	15, 1445, 1487
TseFI	GTSAC	1 cut(s)	1915
TseI	GCWGC	6 cut(s)	512, 932, 1037, 2159, 2579, 2584
Tsp45I	GTSAC	1 cut(s)	1915
TspGWI	ACGGA	2 cut(s)	1835, 2501
TspRI	CASTG	3 cut(s)	15, 1445, 1487
VneI	GTGCAC	1 cut(s)	1621
VpaK11BI	GGWCC	2 cut(s)	2441, 2622
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	4 cut(s)	289, 545, 814, 874
XceI	RCATGY	4 cut(s)	597, 1612, 1831, 2194
XmiI	GTMKAC	1 cut(s)	2247
XmnI	GAANNNNTTC	1 cut(s)	2099
XspI	CTAG	7 cut(s)	252, 383, 393, 941, 1055, 1911, 2091
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.