Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008647.1

Orthogroup ID

OG0013189

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1416

Gene Structure 1415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008647.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1415 bp

atggcctcactacaattccccatttctttggagacattagattcttcaaaaaagttcaattctttttgctacagtagagctgcttctgttgttttgaatagggtgaatgccattaaggtctctcggttccaatctgagttgccagtagatgagagttttgttgagcaaaacccagattgttcaagacttgaaattgataagggaagtagtggcacaaagaaagtgagtaagagagaagtgggtttgaggtctagttctagaaagagcaagtgggttaggaaattggagaatttgtttgtgaatgatggtgagtttgatgttgattactctgttatcaagtctgacctgagcttagagcattgtaatgatattttgaagaggctagagaggtctagtgatgtcaaaactctcaagttttttgagtggatgagaagcaatgggaaactcaaatgcaatttgagtgcttttagctcggtttttcgcgtgttgggtaggagagaaaattgggatgcagctgagaaattgattcaggaaatggttactgaatttggatgtgagctgaattatcaggtcttcaatacccttatttatgcatgtagtaaattgggacgtgtggagtttggagctaagtggtttcgaatgatgcttgaacatgaagtccagccgaatgttgcgacatttggtatgctgatggggctttaccagaagggttggaatgttgaggaagccgagttcactttttctcgaatgaggaactttgggattgtatgtcaatctgcatactccgcaatgatcacaatttatacccgtatgaatttgtatgacagggcagaagagatcattggcttaatgaaagaagatggagtgagaccgaatttggataactggttggtaatgattaatgcttattgtcagcagggaaaagtagaagctgctgaattagtgttagtctccatgaaaggagctgggttttctccaaacattgttgcatacaatacattgataaccggatatgggaaggcatccaaaatggacgctgctcatcacctatttcttggcatcaagaaagtcggattagagcctgatgaaacaacttaccggtccatgattgaaggttggggtagagctgacaattataaggaagcagattggtactataaagagctcaagcgtttgggctacaagcctaattcgtctaacctgtacacactaataaacttgcaggccaaacatgaggatgaagagggggccatcagaactcttgatgatatgcaggagataggatgccaatattcatcaatgcttggcactcttctgcaagcatatgagaaggccggaaggattgataaagtgcctttccttttgagaggttcattatatcaacacgttcttgtcagccggacttcttgttcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000428 GO:0001932 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016591 GO:0019219 GO:0019220 GO:0019222 GO:0030880 GO:0031323 GO:0031326 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0042325 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043549 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045859 GO:0046483 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0051252 GO:0051338 GO:0051716 GO:0051726 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0071900 GO:0080090 GO:0090304 GO:0090575 GO:1901360 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1904029 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

471

Amino Acids

53.81

Weight (kDa)

8.18

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30825
fragaria_vesca	FvH4_1g00580
malus_domestica	MD15G1148600.v1.1
prunus_persica	Prupe.7G266300_v2.0.a1
pyrus_communis	pycom15g13290 pycom15g13300
rosa_chinensis	RchiOBHm_Chr2g0085211
rosa_laevigata	RLG00000015667
rosa_multiflora	Rmu_sc0008510.1_g000001 Rmu_sc0008647.1_g000001 Rmu_sc0011989.1_g000006
rosa_roxburghii	Rroxscaffold_2G00155560
rosa_rugosa	Rorug01G0458400
rosa_samantha	Rh2AG007000 Rh2BG007600 Rh2CG008400 Rh2DG008700
rosa_wichuraiana	Rw2G000650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1137
AccII	CGCG	1 cut(s)	483
AciI	CCGC	1 cut(s)	786
AcsI	RAATTY	4 cut(s)	289, 545, 814, 874
AfaI	GTAC	2 cut(s)	1154, 1205
AfiI	CCNNNNNNNGG	1 cut(s)	1014
AflIII	ACRYGT	2 cut(s)	610, 1384
AgeI	ACCGGT	1 cut(s)	1098
AgsI	TTSAA	9 cut(s)	48, 58, 97, 183, 191, 376, 577, 650, 1112
AjiI	CACGTC	1 cut(s)	611
AjuI	GAANNNNNNNTTGG	2 cut(s)	825, 857
AloI	GAACNNNNNNTCC	5 cut(s)	642, 674, 716, 748, 1393
Alw21I	GWGCWC	1 cut(s)	1167
Alw26I	GTCTC	4 cut(s)	26, 124, 862, 955
AoxI	GGCC	4 cut(s)	3, 1224, 1248, 1332
ApeKI	GCWGC	4 cut(s)	80, 512, 932, 1037
ApoI	RAATTY	4 cut(s)	289, 545, 814, 874
ArsI	GACNNNNNNTTYG	1 cut(s)	1393
AseI	ATTAAT	1 cut(s)	900
AsiGI	ACCGGT	1 cut(s)	1098
AspS9I	GGNCC	2 cut(s)	1101, 1248
AsuHPI	GGTGA	3 cut(s)	115, 320, 1037
AsuII	TTCGAA	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	1101
BanII	GRGCYC	1 cut(s)	1167
BarI	GAAGNNNNNNTAC	2 cut(s)	67, 99
BbsI	GAAGAC	1 cut(s)	565
Bbv12I	GWGCWC	1 cut(s)	1167
BbvI	GCAGC	4 cut(s)	67, 524, 919, 1024
BccI	CCATC	4 cut(s)	299, 685, 854, 1259
BclI	TGATCA	1 cut(s)	792
BcoDI	GTCTC	4 cut(s)	26, 124, 862, 955
BfaI	CTAG	4 cut(s)	252, 258, 383, 393
BfmI	CTRYAG	1 cut(s)	70
BisI	GCNGC	4 cut(s)	81, 513, 933, 1038
BlsI	GCNGC	4 cut(s)	82, 514, 934, 1039
Bme18I	GGWCC	1 cut(s)	1101
BmgBI	CACGTC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	1101, 1248
BmiI	GGNNCC	2 cut(s)	128, 1249
BmsI	GCATC	5 cut(s)	499, 633, 1031, 1068, 1274
BpiI	GAAGAC	1 cut(s)	565
Bpu10I	CCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	2 cut(s)	395, 1151
BsaI	GGTCTC	2 cut(s)	124, 862
BsaWI	WCCGGW	2 cut(s)	1007, 1098
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	1014
Bse118I	RCCGGY	1 cut(s)	1098
Bse1I	ACTGG	2 cut(s)	143, 890
Bse3DI	GCAATG	2 cut(s)	442, 795
BseGI	GGATG	6 cut(s)	432, 514, 557, 1022, 1243, 1289
BseLI	CCNNNNNNNGG	1 cut(s)	1014
BseMI	GCAATG	2 cut(s)	442, 795
BseMII	CTCAG	3 cut(s)	126, 338, 507
BseNI	ACTGG	2 cut(s)	143, 890
BseXI	GCAGC	4 cut(s)	67, 524, 919, 1024
BseYI	CCCAGC	1 cut(s)	965
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	4 cut(s)	5, 1226, 1250, 1334
BshTI	ACCGGT	1 cut(s)	1098
BsiHKAI	GWGCWC	1 cut(s)	1167
BsiSI	CCGG	4 cut(s)	1008, 1099, 1335, 1399
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	1014
BsmAI	GTCTC	4 cut(s)	26, 124, 862, 955
BsmFI	GGGAC	1 cut(s)	621
BsmI	GAATGC	1 cut(s)	112
BsnI	GGCC	4 cut(s)	5, 1226, 1250, 1334
Bso31I	GGTCTC	2 cut(s)	124, 862
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	1167
Bsp1407I	TGTACA	1 cut(s)	1203
Bsp143I	GATC	2 cut(s)	792, 837
BspACI	CCGC	1 cut(s)	786
BspANI	GGCC	4 cut(s)	5, 1226, 1250, 1334
BspCNI	CTCAG	3 cut(s)	127, 339, 508
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	2 cut(s)	128, 1249
BspT104I	TTCGAA	1 cut(s)	637
BspTNI	GGTCTC	2 cut(s)	124, 862
BsrDI	GCAATG	2 cut(s)	442, 795
BsrFI	RCCGGY	1 cut(s)	1098
BsrGI	TGTACA	1 cut(s)	1203
BsrI	ACTGG	2 cut(s)	143, 890
BssAI	RCCGGY	1 cut(s)	1098
BssMI	GATC	2 cut(s)	792, 837
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	4 cut(s)	371, 828, 1236, 1317
BstAUI	TGTACA	1 cut(s)	1203
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	2 cut(s)	1224, 1320
BstDEI	CTNAG	5 cut(s)	135, 347, 352, 516, 627
BstF5I	GGATG	6 cut(s)	432, 514, 557, 1022, 1243, 1289
BstFNI	CGCG	1 cut(s)	483
BstKTI	GATC	2 cut(s)	795, 840
BstMAI	GTCTC	4 cut(s)	26, 124, 862, 955
BstMBI	GATC	2 cut(s)	792, 837
BstMWI	GCNNNNNNNGC	2 cut(s)	694, 785
BstNSI	RCATGY	1 cut(s)	597
BstSFI	CTRYAG	1 cut(s)	70
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	67, 524, 919, 1024
BstV2I	GAAGAC	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	28
BsuRI	GGCC	4 cut(s)	5, 1226, 1250, 1334
BtrI	CACGTC	1 cut(s)	611
BtsCI	GGATG	6 cut(s)	432, 514, 557, 1022, 1243, 1289
Cac8I	GCNNGC	2 cut(s)	1224, 1320
Cfr10I	RCCGGY	1 cut(s)	1098
Cfr13I	GGNCC	2 cut(s)	1101, 1248
CseI	GACGC	1 cut(s)	1043
Csp6I	GTAC	2 cut(s)	1153, 1204
CspAI	ACCGGT	1 cut(s)	1098
CviAII	CATG	5 cut(s)	594, 653, 955, 1105, 1232
CviQI	GTAC	2 cut(s)	1153, 1204
DdeI	CTNAG	5 cut(s)	135, 347, 352, 516, 627
DpnI	GATC	2 cut(s)	794, 839
DpnII	GATC	2 cut(s)	792, 837
Eam1104I	CTCTTC	4 cut(s)	371, 828, 1236, 1317
EarI	CTCTTC	4 cut(s)	371, 828, 1236, 1317
Ecl136II	GAGCTC	1 cut(s)	1165
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	2 cut(s)	124, 862
Eco47I	GGWCC	1 cut(s)	1101
Eco53kI	GAGCTC	1 cut(s)	1165
EcoICRI	GAGCTC	1 cut(s)	1165
EcoT22I	ATGCAT	1 cut(s)	595
EcoT38I	GRGCYC	1 cut(s)	1167
FaeI	CATG	5 cut(s)	597, 656, 958, 1108, 1235
FaqI	GGGAC	1 cut(s)	621
FatI	CATG	5 cut(s)	593, 652, 954, 1104, 1231
FauNDI	CATATG	1 cut(s)	1324
FbaI	TGATCA	1 cut(s)	792
Fnu4HI	GCNGC	4 cut(s)	81, 513, 933, 1038
FokI	GGATG	6 cut(s)	439, 521, 564, 1009, 1250, 1296
FriOI	GRGCYC	1 cut(s)	1167
Fsp4HI	GCNGC	4 cut(s)	81, 513, 933, 1038
FspBI	CTAG	4 cut(s)	252, 258, 383, 393
GluI	GCNGC	4 cut(s)	81, 513, 933, 1038
GsaI	CCCAGC	1 cut(s)	969
HaeIII	GGCC	4 cut(s)	5, 1226, 1250, 1334
HapII	CCGG	4 cut(s)	1008, 1099, 1335, 1399
HgaI	GACGC	1 cut(s)	1043
Hin1II	CATG	5 cut(s)	597, 656, 958, 1108, 1235
HinfI	GANTC	2 cut(s)	41, 526
HpaII	CCGG	4 cut(s)	1008, 1099, 1335, 1399
HphI	GGTGA	3 cut(s)	115, 320, 1037
Hpy166II	GTNNAC	2 cut(s)	735, 1206
Hpy188I	TCNGA	4 cut(s)	136, 343, 1073, 1256
Hpy188III	TCNNGA	6 cut(s)	183, 258, 530, 744, 1063, 1262
Hpy8I	GTNNAC	2 cut(s)	735, 1206
HpyAV	CCTTC	5 cut(s)	700, 1012, 1106, 1324, 1332
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	610, 1386
HpyCH4V	TGCA	8 cut(s)	453, 512, 593, 779, 989, 1222, 1273, 1318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	694, 785
HpyF3I	CTNAG	5 cut(s)	135, 347, 352, 516, 627
HpySE526I	ACGT	2 cut(s)	610, 1386
Hsp92II	CATG	5 cut(s)	597, 656, 958, 1108, 1235
Ksp22I	TGATCA	1 cut(s)	792
Kzo9I	GATC	2 cut(s)	792, 837
LmnI	GCTCC	2 cut(s)	623, 962
Lsp1109I	GCAGC	4 cut(s)	67, 524, 919, 1024
LweI	GCATC	5 cut(s)	499, 633, 1031, 1068, 1274
MaeI	CTAG	4 cut(s)	252, 258, 383, 393
MaeII	ACGT	2 cut(s)	610, 1386
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	2 cut(s)	794, 839
MboI	GATC	2 cut(s)	792, 837
MboII	GAAGA	7 cut(s)	36, 388, 565, 845, 869, 1253, 1304
MhlI	GDGCHC	1 cut(s)	1167
MmeI	TCCRAC	2 cut(s)	692, 1051
MnlI	CCTC	9 cut(s)	16, 240, 372, 381, 715, 744, 1228, 1237, 1361
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	3 cut(s)	114, 848, 900
MslI	CAYNNNNRTG	2 cut(s)	363, 1236
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	4 cut(s)	1008, 1099, 1335, 1399
Mva1269I	GAATGC	1 cut(s)	112
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	694, 785
NdeI	CATATG	1 cut(s)	1324
NdeII	GATC	2 cut(s)	792, 837
NlaIII	CATG	5 cut(s)	597, 656, 958, 1108, 1235
NlaIV	GGNNCC	2 cut(s)	128, 1249
NmeAIII	GCCGAG	1 cut(s)	754
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	597
NspV	TTCGAA	1 cut(s)	637
PctI	GAATGC	1 cut(s)	112
PfeI	GAWTC	2 cut(s)	41, 526
PinAI	ACCGGT	1 cut(s)	1098
PkrI	GCNGC	4 cut(s)	82, 514, 934, 1039
PshBI	ATTAAT	1 cut(s)	900
PsiI	TTATAA	1 cut(s)	1137
Psp124BI	GAGCTC	1 cut(s)	1167
PspFI	CCCAGC	1 cut(s)	965
PspN4I	GGNNCC	2 cut(s)	128, 1249
PspPI	GGNCC	2 cut(s)	1101, 1248
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	1154, 1205
RsaNI	GTAC	2 cut(s)	1153, 1204
RseI	CAYNNNNRTG	2 cut(s)	363, 1236
SacI	GAGCTC	1 cut(s)	1167
SaqAI	TTAA	3 cut(s)	114, 848, 900
SatI	GCNGC	4 cut(s)	81, 513, 933, 1038
Sau3AI	GATC	2 cut(s)	792, 837
Sau96I	GGNCC	2 cut(s)	1101, 1248
SduI	GDGCHC	1 cut(s)	1167
SfaNI	GCATC	5 cut(s)	499, 633, 1031, 1068, 1274
SfcI	CTRYAG	1 cut(s)	70
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	1 cut(s)	1101
SmiMI	CAYNNNNRTG	2 cut(s)	363, 1236
SmlI	CTYRAG	2 cut(s)	410, 1166
SmoI	CTYRAG	2 cut(s)	410, 1166
SsiI	CCGC	1 cut(s)	786
SspI	AATATT	1 cut(s)	1292
SspMI	CTAG	4 cut(s)	252, 258, 383, 393
SstI	GAGCTC	1 cut(s)	1167
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	613, 1389
TaqI	TCGA	3 cut(s)	637, 745, 1412
TaqII	GACCGA	1 cut(s)	886
TatI	WGTACW	1 cut(s)	1203
TfiI	GAWTC	2 cut(s)	41, 526
Tru1I	TTAA	3 cut(s)	114, 848, 900
Tru9I	TTAA	3 cut(s)	114, 848, 900
TseI	GCWGC	4 cut(s)	80, 512, 932, 1037
TspDTI	ATGAA	8 cut(s)	669, 827, 866, 971, 1101, 1254, 1284, 1362
VpaK11BI	GGWCC	1 cut(s)	1101
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	4 cut(s)	289, 545, 814, 874
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	1 cut(s)	597
XspI	CTAG	4 cut(s)	252, 258, 383, 393
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.