Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

1086886 .. 1088090

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g02062.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCGACCAGAAGAAGACAAGTGAAGACGACCGAAGAAAGAGGAGCCGCAGCTGTGCGGATGAAGACGACCAAGCAATCAGGAACGACGACAGGTGGCTCATTCTGGAGAGGACAGTGGTTTTGGAAATAATCCAAGAGTACTGCACCTTGAACTCCAAGTGCATGAGGTCTCGTTCCCTCTCCACCAACAACAAGTCGAAGCCTCCTTCAAGCAGCGAGTTACTGGACAAACTACGAGAGGAGCAACGAGATATTGCGGATAACAAACTGAGATTTGATAAGCGCACCTTCCAAAGCCAGTCGAGGTCCAATGCTGCTATAAAGCATCTATGCTGCAAGTTAGGTGCCGATCGCGAAAGCATGAATCTCCGTTCAGATGACGTGTCCCTAGTGATTGGCCCTCTAAAATATACACTCGAAGGCGTAGCAACCGAGGATTGTAACTGGGATGCTGGTTTGGGCGAAAAATCTGGACGCATTGTTCCATCTGTAAAATCAATCAGTGGAATGGACGGCGATGACGTGATGTTTGTGCTTGTGGTGGAGAGTTATTGCGTCTATCATGAATTGGTTCAAGCAAACTTCCATAAGACATACAGTTGTTGTTTAATTATGACAGGTAAAGGGATGGCTGATGTGAAACTGAGACTGTTCGTCAAGTATGTTATGGAGAAGCTTGAAGTTCCAGTGTTTTACTTATCGGATTCAGACCCCAACGGCATTGAGATTACTACCGTATACAAATACGGTTCGGCAAACATGGCCTACGATGCCGAGAATGTGGCAAATCCACACATTAAGGAATATGTACAGATGGATGAGAAGCTGAGGACAGAGGTTCAGCACATGATAGACACCAAGCAGGGCACATCCATCATGTTGTTGACTCTTGAGAGGGACAATGGACTATCCGAATTCGTGGTATTGAAGTTGCTGAAGGTGATGAGGGCTGCGATTTTGAAAGGGAGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

326

Amino Acids

36.97

Weight (kDa)

6.28

Isoelectric Point (pI)

48.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	178 - 268	3.8e-27	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	357
AciI	CCGC	3 cut(s)	49, 59, 260
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	917
AcuI	CTGAAG	1 cut(s)	959
AfaI	GTAC	2 cut(s)	143, 813
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	6 cut(s)	154, 213, 578, 683, 931, 964
AhdI	GACNNNNNGTC	1 cut(s)	656
AjiI	CACGTC	2 cut(s)	385, 526
AloI	GAACNNNNNNTCC	2 cut(s)	468, 500
AluBI	AGCT	3 cut(s)	54, 679, 829
AluI	AGCT	3 cut(s)	54, 679, 829
Alw26I	GTCTC	2 cut(s)	177, 643
AoxI	GGCC	3 cut(s)	3, 400, 765
ApeKI	GCWGC	5 cut(s)	51, 216, 317, 336, 953
ApoI	RAATTY	1 cut(s)	917
ArsI	GACNNNNNNTTYG	4 cut(s)	106, 138, 515, 547
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	309, 401
AsuHPI	GGTGA	1 cut(s)	955
AvaII	GGWCC	1 cut(s)	309
BaeGI	GKGCMC	1 cut(s)	872
BanI	GGYRCC	1 cut(s)	347
BbsI	GAAGAC	3 cut(s)	23, 33, 72
BbvCI	CCTCAGC	1 cut(s)	830
BbvI	GCAGC	5 cut(s)	63, 228, 304, 323, 940
BccI	CCATC	4 cut(s)	496, 625, 811, 884
BceAI	ACGGC	2 cut(s)	532, 736
BcoDI	GTCTC	2 cut(s)	177, 643
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	6 cut(s)	49, 52, 217, 318, 337, 954
BlsI	GCNGC	6 cut(s)	50, 53, 218, 319, 338, 955
BmcAI	AGTACT	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	309
BmeRI	GACNNNNNGTC	1 cut(s)	656
BmgBI	CACGTC	2 cut(s)	385, 526
BmgT120I	GGNCC	2 cut(s)	309, 401
BmiI	GGNNCC	2 cut(s)	47, 349
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	3 cut(s)	337, 442, 763
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	3 cut(s)	23, 33, 72
BpmI	CTGGAG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	830
BpuEI	CTTGAG	1 cut(s)	914
BsaI	GGTCTC	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	435
Bse1I	ACTGG	4 cut(s)	231, 301, 452, 689
BseDI	CCNNGG	1 cut(s)	435
BseGI	GGATG	5 cut(s)	67, 457, 636, 826, 872
BseMII	CTCAG	3 cut(s)	263, 638, 821
BseNI	ACTGG	4 cut(s)	231, 301, 452, 689
BseRI	GAGGAG	2 cut(s)	58, 257
BseSI	GKGCMC	1 cut(s)	872
BseXI	GCAGC	5 cut(s)	63, 228, 304, 323, 940
BsgI	GTGCAG	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	357
Bsh1285I	CGRYCG	2 cut(s)	34, 355
BshFI	GGCC	3 cut(s)	5, 402, 767
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	2 cut(s)	34, 355
BslFI	GGGAC	2 cut(s)	373, 914
BsmAI	GTCTC	2 cut(s)	177, 643
BsmFI	GGGAC	2 cut(s)	373, 914
BsnI	GGCC	3 cut(s)	5, 402, 767
Bso31I	GGTCTC	1 cut(s)	177
Bsp1286I	GDGCHC	1 cut(s)	872
Bsp1407I	TGTACA	1 cut(s)	811
Bsp143I	GATC	1 cut(s)	352
Bsp68I	TCGCGA	1 cut(s)	357
BspACI	CCGC	3 cut(s)	49, 59, 260
BspANI	GGCC	3 cut(s)	5, 402, 767
BspCNI	CTCAG	3 cut(s)	264, 639, 822
BspFNI	CGCG	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	47, 349
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	811
BsrI	ACTGG	4 cut(s)	231, 301, 452, 689
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	352
BssNAI	GTATAC	1 cut(s)	742
Bst1107I	GTATAC	1 cut(s)	742
Bst4CI	ACNGT	5 cut(s)	118, 602, 654, 739, 752
BstAUI	TGTACA	1 cut(s)	811
BstDEI	CTNAG	3 cut(s)	272, 647, 830
BstF5I	GGATG	5 cut(s)	67, 457, 636, 826, 872
BstFNI	CGCG	1 cut(s)	357
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	2 cut(s)	177, 643
BstMBI	GATC	1 cut(s)	352
BstMCI	CGRYCG	2 cut(s)	34, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	764, 773
BstSLI	GKGCMC	1 cut(s)	872
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	63, 228, 304, 323, 940
BstV2I	GAAGAC	3 cut(s)	23, 33, 72
BstZ17I	GTATAC	1 cut(s)	742
BsuRI	GGCC	3 cut(s)	5, 402, 767
BtgZI	GCGATG	1 cut(s)	534
BtrI	CACGTC	2 cut(s)	385, 526
BtsCI	GGATG	5 cut(s)	67, 457, 636, 826, 872
BtsIMutI	CAGTG	3 cut(s)	123, 511, 696
BtuMI	TCGCGA	1 cut(s)	357
CciI	TCATGA	1 cut(s)	565
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	309, 401
CseI	GACGC	2 cut(s)	486, 547
Csp6I	GTAC	2 cut(s)	142, 812
CviAII	CATG	6 cut(s)	166, 364, 566, 763, 850, 880
CviQI	GTAC	2 cut(s)	142, 812
DdeI	CTNAG	3 cut(s)	272, 647, 830
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DriI	GACNNNNNGTC	1 cut(s)	656
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	656
Eco31I	GGTCTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	959
EcoRI	GAATTC	1 cut(s)	917
FaeI	CATG	6 cut(s)	169, 367, 569, 766, 853, 883
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	2 cut(s)	373, 914
FatI	CATG	6 cut(s)	165, 363, 565, 762, 849, 879
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	6 cut(s)	49, 52, 217, 318, 337, 954
FokI	GGATG	5 cut(s)	74, 464, 643, 833, 859
Fsp4HI	GCNGC	6 cut(s)	49, 52, 217, 318, 337, 954
FspBI	CTAG	1 cut(s)	392
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	6 cut(s)	49, 52, 217, 318, 337, 954
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	3 cut(s)	5, 402, 767
HgaI	GACGC	2 cut(s)	486, 547
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	6 cut(s)	169, 367, 569, 766, 853, 883
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	888
HindII	GTYRAC	1 cut(s)	888
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	367, 707, 889
HphI	GGTGA	1 cut(s)	955
Hpy166II	GTNNAC	2 cut(s)	742, 888
Hpy188I	TCNGA	4 cut(s)	379, 706, 712, 916
Hpy188III	TCNNGA	6 cut(s)	82, 107, 356, 474, 566, 893
Hpy8I	GTNNAC	2 cut(s)	742, 888
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	4 cut(s)	219, 301, 416, 934
HpyCH4III	ACNGT	5 cut(s)	118, 602, 654, 739, 752
HpyCH4IV	ACGT	2 cut(s)	384, 525
HpyCH4V	TGCA	3 cut(s)	147, 165, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	764, 773
HpyF3I	CTNAG	3 cut(s)	272, 647, 830
HpySE526I	ACGT	2 cut(s)	384, 525
Hsp92II	CATG	6 cut(s)	169, 367, 569, 766, 853, 883
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	45, 244
Lsp1109I	GCAGC	5 cut(s)	63, 228, 304, 323, 940
LweI	GCATC	3 cut(s)	337, 442, 763
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	2 cut(s)	384, 525
MaeIII	GTNAC	2 cut(s)	222, 443
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	5 cut(s)	25, 28, 38, 48, 77
MhlI	GDGCHC	1 cut(s)	872
MluCI	AATT	3 cut(s)	569, 612, 917
MlyI	GAGTC	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	611, 801
MspA1I	CMGCKG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	764, 773
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	6 cut(s)	169, 367, 569, 766, 853, 883
NlaIV	GGNNCC	2 cut(s)	47, 349
NmeAIII	GCCGAG	1 cut(s)	802
NruI	TCGCGA	1 cut(s)	357
PagI	TCATGA	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	367, 707
PkrI	GCNGC	6 cut(s)	50, 53, 218, 319, 338, 955
Ple19I	CGATCG	1 cut(s)	355
PleI	GAGTC	1 cut(s)	883
PpsI	GAGTC	1 cut(s)	883
PspN4I	GGNNCC	2 cut(s)	47, 349
PspPI	GGNCC	2 cut(s)	309, 401
PvuI	CGATCG	1 cut(s)	355
PvuII	CAGCTG	1 cut(s)	54
RruI	TCGCGA	1 cut(s)	357
RsaI	GTAC	2 cut(s)	143, 813
RsaNI	GTAC	2 cut(s)	142, 812
SaqAI	TTAA	2 cut(s)	611, 801
SatI	GCNGC	6 cut(s)	49, 52, 217, 318, 337, 954
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	2 cut(s)	309, 401
ScaI	AGTACT	1 cut(s)	143
SchI	GAGTC	1 cut(s)	883
SduI	GDGCHC	1 cut(s)	872
SfaNI	GCATC	3 cut(s)	337, 442, 763
SinI	GGWCC	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	3 cut(s)	569, 612, 917
SsiI	CCGC	3 cut(s)	49, 59, 260
SspMI	CTAG	1 cut(s)	392
TaaI	ACNGT	5 cut(s)	118, 602, 654, 739, 752
TaiI	ACGT	2 cut(s)	387, 528
TaqI	TCGA	3 cut(s)	200, 305, 420
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	569, 612, 917
TatI	WGTACW	2 cut(s)	141, 811
TauI	GCSGC	1 cut(s)	51
TfiI	GAWTC	2 cut(s)	367, 707
Tru1I	TTAA	2 cut(s)	611, 801
Tru9I	TTAA	2 cut(s)	611, 801
TscAI	CASTG	3 cut(s)	123, 511, 696
TseI	GCWGC	5 cut(s)	51, 216, 317, 336, 953
TspDTI	ATGAA	3 cut(s)	78, 380, 582
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	3 cut(s)	123, 511, 696
VpaK11BI	GGWCC	1 cut(s)	309
XapI	RAATTY	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	392
ZrmI	AGTACT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.