Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

67650193 .. 67650972

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33838

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGTTCCTTGCATGGTACCGGAAGTCTAACCGCACCTTGCCTTCTCCCTCCAATAAATGCATGAAGGTCAAAGATATGTCTCGCGAAGAAGTATTGGAGAAAATTAGGGAGGAGAAGAAACGTATTGAAGATGATTGTTCCTTTGAGTTGGTTGATCAATCAGCCTCCAACAAAATGTTCGATGACGGTGCCCAACGTTTACTTCTAAAAGACGGCAAAAAACTTTACAAGCCGCAAAAAGCTACAAAAGAAGCCTATGGTCGTGTTCTAAATGTTGTTAAAGATATATGTGAGCACAAGAAGTCCCGCACCCTCCGTGATATCTTTTACACGGCTCCCAAACTTTTCCGCAAGCAATCTAGGTCTAACAAAGCCGTTAATCAACTCAGTTGTGAAGTAGGTTGCACTCGTACCAGCCTCAATGTCATTGCAGGAGATAGAGGCTTTGTCATAGGTCCTTTTACTTTCAAGCTAGACGGAAGATCGGTCGATTGTAACAGTGAATTTGGTCCAGATAATAGGGTCAGGGTTGGACAAGTCGTTCCGCCTTATATAAGTTCTGTTAGTGATATGAAGAACAATGGTGCAAGGTTCGTGTTAGTAGTGGAAAGTGTATCTGCTTATCAAAGATTGACGGGGGACAACTTTCATAATGATTATAAGTGTATAATCATGACCGGAAAAGGCATGTCTGATCTAGCACTTAGAGAATTCGCAAAGTATATAATGGACACATTCGAGATTCCAATATTTCTCCTCTCAGATTCTGATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

259

Amino Acids

29.56

Weight (kDa)

9.13

Isoelectric Point (pI)

42.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	89 - 143	1.8e-15	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	199 - 259	3.1e-16	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	2 cut(s)	18, 191
AccII	CGCG	1 cut(s)	87
AciI	CCGC	5 cut(s)	34, 236, 310, 352, 548
AclI	AACGTT	1 cut(s)	199
AclWI	GGATC	1 cut(s)	767
AcsI	RAATTY	2 cut(s)	506, 713
AfaI	GTAC	2 cut(s)	20, 415
AgsI	TTSAA	2 cut(s)	131, 472
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 189, 196, 221
AloI	GAACNNNNNNTCC	2 cut(s)	528, 560
AluBI	AGCT	2 cut(s)	245, 475
AluI	AGCT	2 cut(s)	245, 475
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	767
AlwNI	CAGNNNCTG	1 cut(s)	770
ApoI	RAATTY	2 cut(s)	506, 713
Asp718I	GGTACC	1 cut(s)	18
AspS9I	GGNCC	2 cut(s)	458, 512
AvaII	GGWCC	2 cut(s)	458, 512
BaeGI	GKGCMC	1 cut(s)	196
BanI	GGYRCC	2 cut(s)	18, 191
Bbv12I	GWGCWC	1 cut(s)	300
BceAI	ACGGC	3 cut(s)	232, 351, 362
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	87
BfaI	CTAG	3 cut(s)	363, 476, 701
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme18I	GGWCC	2 cut(s)	458, 512
BmgT120I	GGNCC	2 cut(s)	458, 512
BmiI	GGNNCC	3 cut(s)	20, 193, 339
BsaBI	GATNNNNATC	1 cut(s)	771
BsaWI	WCCGGW	2 cut(s)	21, 680
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	771
BseJI	GATNNNNATC	1 cut(s)	771
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	403, 777
BseRI	GAGGAG	2 cut(s)	128, 749
BseSI	GKGCMC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	492
BshNI	GGYRCC	2 cut(s)	18, 191
BsiEI	CGRYCG	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	22, 681
BslFI	GGGAC	2 cut(s)	292, 656
BsmAI	GTCTC	1 cut(s)	87
BsmFI	GGGAC	2 cut(s)	292, 656
Bsp1286I	GDGCHC	2 cut(s)	196, 300
Bsp143I	GATC	4 cut(s)	157, 485, 697, 772
Bsp68I	TCGCGA	1 cut(s)	87
BspACI	CCGC	5 cut(s)	34, 236, 310, 352, 548
BspCNI	CTCAG	2 cut(s)	402, 776
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	675
BspLI	GGNNCC	3 cut(s)	20, 193, 339
BspPI	GGATC	1 cut(s)	767
BspT107I	GGYRCC	2 cut(s)	18, 191
BsrDI	GCAATG	1 cut(s)	429
BssMI	GATC	4 cut(s)	157, 485, 697, 772
Bst4CI	ACNGT	2 cut(s)	191, 503
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	3 cut(s)	389, 707, 763
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	160, 488, 700, 775
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	4 cut(s)	157, 485, 697, 772
BstMCI	CGRYCG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	508
BtuMI	TCGCGA	1 cut(s)	87
Cac8I	GCNNGC	1 cut(s)	356
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	675
Cfr13I	GGNCC	2 cut(s)	458, 512
Csp6I	GTAC	2 cut(s)	19, 414
CviAII	CATG	5 cut(s)	15, 64, 676, 691, 777
CviJI	RGCY	9 cut(s)	167, 235, 245, 257, 338, 377, 420, 447, 475
CviKI_1	RGCY	9 cut(s)	167, 235, 245, 257, 338, 377, 420, 447, 475
CviQI	GTAC	2 cut(s)	19, 414
DdeI	CTNAG	3 cut(s)	389, 707, 763
DpnI	GATC	4 cut(s)	159, 487, 699, 774
DpnII	GATC	4 cut(s)	157, 485, 697, 772
EciI	GGCGGA	1 cut(s)	537
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	458, 512
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRI	GAATTC	1 cut(s)	713
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	65
FaeI	CATG	5 cut(s)	18, 67, 679, 694, 780
FaqI	GGGAC	2 cut(s)	292, 656
FatI	CATG	5 cut(s)	14, 63, 675, 690, 776
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	236
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	3 cut(s)	363, 476, 701
GluI	GCNGC	1 cut(s)	236
HapII	CCGG	2 cut(s)	22, 681
Hin1II	CATG	5 cut(s)	18, 67, 679, 694, 780
HinfI	GANTC	2 cut(s)	745, 767
HpaII	CCGG	2 cut(s)	22, 681
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	3 cut(s)	697, 766, 772
Hpy188III	TCNNGA	4 cut(s)	86, 515, 676, 742
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	54, 61
HpyCH4III	ACNGT	2 cut(s)	191, 503
HpyCH4IV	ACGT	2 cut(s)	124, 199
HpyCH4V	TGCA	5 cut(s)	14, 63, 408, 434, 590
HpyF3I	CTNAG	3 cut(s)	389, 707, 763
HpySE526I	ACGT	2 cut(s)	124, 199
Hsp92II	CATG	5 cut(s)	18, 67, 679, 694, 780
KpnI	GGTACC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	157, 485, 697, 772
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	6 cut(s)	35, 420, 430, 514, 528, 694
MaeI	CTAG	3 cut(s)	363, 476, 701
MaeII	ACGT	2 cut(s)	124, 199
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	4 cut(s)	159, 487, 699, 774
MboI	GATC	4 cut(s)	157, 485, 697, 772
MboII	GAAGA	5 cut(s)	101, 130, 143, 495, 589
MhlI	GDGCHC	2 cut(s)	196, 300
MluCI	AATT	3 cut(s)	105, 506, 713
MmeI	TCCRAC	2 cut(s)	195, 514
MnlI	CCTC	7 cut(s)	61, 106, 178, 326, 431, 437, 770
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	2 cut(s)	282, 381
MspI	CCGG	2 cut(s)	22, 681
MvnI	CGCG	1 cut(s)	87
NdeII	GATC	4 cut(s)	157, 485, 697, 772
NlaIII	CATG	5 cut(s)	18, 67, 679, 694, 780
NlaIV	GGNNCC	3 cut(s)	20, 193, 339
NruI	TCGCGA	1 cut(s)	87
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	694
PagI	TCATGA	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	745, 767
PkrI	GCNGC	1 cut(s)	237
PpuMI	RGGWCCY	1 cut(s)	458
PsiI	TTATAA	1 cut(s)	663
Psp1406I	AACGTT	1 cut(s)	199
Psp5II	RGGWCCY	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	20, 193, 339
PspPI	GGNCC	2 cut(s)	458, 512
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	770
RruI	TCGCGA	1 cut(s)	87
RsaI	GTAC	2 cut(s)	20, 415
RsaNI	GTAC	2 cut(s)	19, 414
SaqAI	TTAA	2 cut(s)	282, 381
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	4 cut(s)	157, 485, 697, 772
Sau96I	GGNCC	2 cut(s)	458, 512
SduI	GDGCHC	2 cut(s)	196, 300
SinI	GGWCC	2 cut(s)	458, 512
Sse9I	AATT	3 cut(s)	105, 506, 713
SsiI	CCGC	5 cut(s)	34, 236, 310, 352, 548
SspI	AATATT	1 cut(s)	753
SspMI	CTAG	3 cut(s)	363, 476, 701
TaaI	ACNGT	2 cut(s)	191, 503
TaiI	ACGT	2 cut(s)	127, 202
TaqI	TCGA	3 cut(s)	183, 492, 741
TaqII	GACCGA	1 cut(s)	478
TasI	AATT	3 cut(s)	105, 506, 713
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	745, 767
Tru1I	TTAA	2 cut(s)	282, 381
Tru9I	TTAA	2 cut(s)	282, 381
TscAI	CASTG	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	80, 590, 641
TspGWI	ACGGA	2 cut(s)	308, 495
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	458, 512
XapI	RAATTY	2 cut(s)	506, 713
XceI	RCATGY	1 cut(s)	694
XspI	CTAG	3 cut(s)	363, 476, 701
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.