Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Forward (+)

56557926 .. 56563793

Gene Structure 5868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0475300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGGAGGCTACGGCCGCCGCGCGCGGTGGTTCGATGCCGGCGATGACGCAAGCTCAGACTCGCAAGCAGTGGCGCGCCGTCTCGGAGCATCATTCGGCTCGGAACATCGGCGACGAGGAGCTGGAGCGATCAAAGTTAGGCCATTCTGATGAGAGAACAATATATGAGGTGCAGCAGGGAAGAGAGCCAGTTGATGTAGACTTTTGTTCGATCTCCATAGATGGGACTTTGGACCATGACCTCTTGCAGCAGCGGCTTCATGATGTTGTCAGGCAAAGAGAGGAACTGCAGCATATGGAGACTGAGCTTAGAGCTCAAATGATTGCAAGATCTGAGATAATGGATATACAAAATAACTTTGATGCTCAACTGAAGGAGCATGCTAATGCTGCTTCCAAGCTTCAGGAGCAACTCCATGAAAAGGAGCAGGCCATACATGATTTGGAGAGGGAATTGGAAGAAAAAGATAGAGAGCTGCATGCTACCAAGTTAGATAATGAAGCGGCCTGGGCCAAAGAGGGCCTTCTTAGAGAACAGAACAAAGAATTAGCAACTTTCAGAGAGCGTGACCATTCAGAAGCTGAAAGAGCCCAGCATATACAGCAATTACATGATCTTCAAGAACATATTCAAGAAAAAGAGAGGCAACTTATTGAGTTGCAGGAACAGCATAGGCTTGCTCAAGAAGCCATTCTATTTAAGGATGAACAATTGAGCGAAGCCCAAGCTTGGATCACCCGTGTTCAAGAAATGGATGCTTTGCAGTCAACTACACTTCAAAATCAGTTGCGGGAACATTCAGAACACTATAATCAGCTCTGGCTTGGTTGGCAAAGACAGTTTGCTGAAATGGAGAGACATCATATGCATACGGTACAACAGCTTCAGCTTGAGTTAGCTGATGCCAGACAAAGAAGTGGAACTTACACTGATGAATCACGTGCAGCAAATTCAACTTCAAAGGATGCATCTCAGTTTGGTCGGAACAATGGAAACCAGATTGATATAAATACGTCAAATGGAAATACAGGGGCCCTCCCAAATGGGAATTCACAGGACGTTTCATCGTTTTCTTCAACTGTCAATGCATCAAGTCAGGTTGACCATGTTCCTAGTGTTCCAATTGGTCCTTCGTCTCTACTTGGGATGCCTCCCTTTCTTCCACCTGGACAGGTGACTGGTATGCATCCATTTGTTCTGCATCAACCTGGGGTTCCCCATTCCATGCCACCACAGGTTCCTCAATCACATGTGGGGAATTTTCACTCAATACCTGCAATGTCATCTCTCCAACAGTGGCAGAACCAACAGGCTCCGTCCGAGAGTTTGCAGATAGCTACACAAACTGAACCTCCATCTTCCCAAAATGATCAAAACCTGATTAGATCAGATGCAAAGTATCACTATGAAACTTCTGTTAATGGGCAACCATTTCATCAAGACTATTTGGATGTTCAAATTCGCGAAGGGGCAGAGCCTGAGCCTGTGATATCATCTTCCCCCGAGGAAGCACAGGTTCTTGAGTCAATTAATAGCAGTTACTTGGTCTCACCCCAAACTGATCAGAGCTTGCAACAAATGTCTTCCCAATTTACTGATTCTTTAAGATTAGATTCTCTTGAGAAGAGCAGTGAAACCAAGGCACATGAGCAGAATGTTCAGACCTTGATCGATCATGGGTTGGATGGACAAGTTTTAACGGCTGAGAAACCAAATTCTGCTACCAAGTCCTCAAAATCTGACACTCCAATCCATTCAGTCAATCTCAATGAAATTACAATAAACAATTCCCCTGGTACAGGTTTGCCTGAGTCCTTTGTCTCAACTGGACACACCAATGCACCATCAGTGGGTAGGACTTCGGAGACTGCTCTTCTAGATGAAAGGTCATTGTTGGCTTGCATGGTTCGGACAATACCAGCTGGTGGTAGAATTAGGATCAGTTCGACGCTGCCGAATAGGCTCGGGAAGATGCTTGCACCTTTACACTGGCATGATTACAAGAAAAAGTATGGAAAGCTAGATGATTTCGTTGCTGCTCATACTGAACTATTTGTGATTGAGGGGGACTATATTCAGCTGCGTGAAGGAGCTCAAGAGATGATAGCAGCTACAGCCGCCGTTGCCAGAGTTGCTGCTGCTGCAGCAGCATCATCCCCCTACTCTTCTTGTTTGCCTTCTGTGGCTGTTACTCCAGTGGCACAGACTCACCGCTTAAAGAAGATATTATCTCTTGATTCCAAAAATGTGGTTACTTCTACTCCAAATGCAAATAATGCTCACTTGCAGTCTGTGAAGCAGAATCAGCAATTAAATGGTGTATCTTTTGGTGTTTCGGGAGGTATGTCGAACGTAAAAATTTTGAGCAAATCCAAGGACATGAATGGGCCTGAACCTACTCCCAGCCAGTCATCTGTACTTCTTAATGGTGGAAATGGAGCTCTGGACAGGTCAATGGCCAATGGCCGGCCGAGCTCAAATTTTGTTGGGAAACAGCATGGCAGGATGACTAATTCTGCATTTACCTCCAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

845

Amino Acids

93.66

Weight (kDa)

5.64

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7725	PF24851	625 - 695	8.6e-39	Domain of unknown function (DUF7725)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1282
AccB7I	CCANNNNNTGG	1 cut(s)	1925
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	5 cut(s)	20, 22, 24, 75, 1464
AciI	CCGC	8 cut(s)	15, 18, 24, 253, 503, 790, 2118, 2212
AclWI	GGATC	2 cut(s)	740, 1946
AcoI	YGGCCR	4 cut(s)	12, 2457, 2464, 2468
AcsI	RAATTY	7 cut(s)	949, 1048, 1258, 1458, 1714, 2358, 2479
AcuI	CTGAAG	3 cut(s)	386, 392, 869
AcvI	CACGTG	1 cut(s)	941
AfaI	GTAC	3 cut(s)	876, 1798, 2418
AfiI	CCNNNNNNNGG	7 cut(s)	222, 421, 729, 1799, 1850, 1925, 2466
AflIII	ACRYGT	1 cut(s)	1249
AgsI	TTSAA	8 cut(s)	620, 632, 746, 779, 954, 960, 1077, 1457
AjnI	CCWGG	4 cut(s)	506, 1165, 1207, 1792
AjuI	GAANNNNNNNTTGG	4 cut(s)	1033, 1065, 1114, 1146
Alw21I	GWGCWC	4 cut(s)	316, 2095, 2443, 2477
Alw26I	GTCTC	7 cut(s)	85, 293, 850, 1140, 1552, 1825, 1859
AlwI	GGATC	2 cut(s)	740, 1946
AlwNI	CAGNNNCTG	2 cut(s)	581, 1478
Ama87I	CYCGRG	2 cut(s)	1502, 1964
ApaI	GGGCCC	1 cut(s)	1036
ApoI	RAATTY	7 cut(s)	949, 1048, 1258, 1458, 1714, 2358, 2479
AscI	GGCGCGCC	1 cut(s)	73
AseI	ATTAAT	1 cut(s)	1530
Asp700I	GAANNNNTTC	2 cut(s)	627, 690
AspLEI	GCGC	4 cut(s)	22, 24, 75, 77
AspS9I	GGNCC	7 cut(s)	232, 510, 520, 1032, 1033, 1127, 2387
AsuHPI	GGTGA	4 cut(s)	727, 1186, 1542, 2201
AvaI	CYCGRG	2 cut(s)	1502, 1964
AvaII	GGWCC	2 cut(s)	232, 1127
BaeGI	GKGCMC	1 cut(s)	1036
BalI	TGGCCA	1 cut(s)	2459
BanII	GRGCYC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
BarI	GAAGNNNNNNTAC	2 cut(s)	867, 899
BbrPI	CACGTG	1 cut(s)	941
BbsI	GAAGAC	1 cut(s)	1575
Bbv12I	GWGCWC	4 cut(s)	316, 2095, 2443, 2477
BccI	CCATC	4 cut(s)	215, 1363, 1679, 1852
BceAI	ACGGC	4 cut(s)	27, 62, 1716, 2105
BciT130I	CCWGG	4 cut(s)	508, 1167, 1209, 1794
BclI	TGATCA	2 cut(s)	1369, 1561
BcoDI	GTCTC	7 cut(s)	85, 293, 850, 1140, 1552, 1825, 1859
BfaI	CTAG	3 cut(s)	1113, 1877, 2021
BfmI	CTRYAG	3 cut(s)	287, 2112, 2142
BfuAI	ACCTGC	1 cut(s)	1282
BglI	GCCNNNNNGGC	1 cut(s)	1960
BglII	AGATCT	1 cut(s)	329
Bme1390I	CCNGG	4 cut(s)	508, 1167, 1209, 1794
Bme18I	GGWCC	2 cut(s)	232, 1127
BmeT110I	CYCGRG	2 cut(s)	1502, 1964
BmgT120I	GGNCC	7 cut(s)	232, 510, 520, 1032, 1033, 1127, 2387
BmiI	GGNNCC	5 cut(s)	1033, 1034, 1215, 1239, 1314
BmrFI	CCNGG	4 cut(s)	508, 1167, 1209, 1794
BpiI	GAAGAC	1 cut(s)	1575
BpmI	CTGGAG	3 cut(s)	143, 2178, 2512
Bpu10I	CCTNAGC	1 cut(s)	1479
BpuEI	CTTGAG	5 cut(s)	666, 911, 1541, 1640, 2079
Bsa29I	ATCGAT	1 cut(s)	1671
BsaAI	YACGTR	1 cut(s)	941
BsaI	GGTCTC	1 cut(s)	1552
BsaJI	CCNNGG	6 cut(s)	507, 1208, 1503, 1638, 1792, 2373
BsaXI	ACNNNNNCTCC	4 cut(s)	1336, 1366, 2245, 2275
Bsc4I	CCNNNNNNNGG	7 cut(s)	222, 421, 729, 1799, 1850, 1925, 2466
Bse118I	RCCGGY	2 cut(s)	37, 2466
Bse1I	ACTGG	6 cut(s)	188, 1183, 1831, 1994, 2195, 2407
Bse3DI	GCAATG	1 cut(s)	1284
BseBI	CCWGG	4 cut(s)	508, 1167, 1209, 1794
BseCI	ATCGAT	1 cut(s)	1671
BseDI	CCNNGG	6 cut(s)	507, 1208, 1503, 1638, 1792, 2373
BseGI	GGATG	9 cut(s)	709, 760, 970, 1152, 1186, 1456, 1690, 2153, 2511
BseLI	CCNNNNNNNGG	7 cut(s)	222, 421, 729, 1799, 1850, 1925, 2466
BseMI	GCAATG	1 cut(s)	1284
BseMII	CTCAG	7 cut(s)	68, 294, 324, 986, 1470, 1695, 1800
BseNI	ACTGG	6 cut(s)	188, 1183, 1831, 1994, 2195, 2407
BsePI	GCGCGC	2 cut(s)	20, 73
BseRI	GAGGAG	1 cut(s)	131
BseSI	GKGCMC	1 cut(s)	1036
BseX3I	CGGCCG	2 cut(s)	12, 2468
BseYI	CCCAGC	2 cut(s)	591, 2402
BsgI	GTGCAG	2 cut(s)	191, 963
Bsh1236I	CGCG	5 cut(s)	20, 22, 24, 75, 1464
Bsh1285I	CGRYCG	2 cut(s)	15, 2471
BshVI	ATCGAT	1 cut(s)	1671
BsiEI	CGRYCG	2 cut(s)	15, 2471
BsiHKAI	GWGCWC	4 cut(s)	316, 2095, 2443, 2477
BsiHKCI	CYCGRG	2 cut(s)	1502, 1964
BsiSI	CCGG	2 cut(s)	38, 2467
BslFI	GGGAC	2 cut(s)	238, 2081
BslI	CCNNNNNNNGG	7 cut(s)	222, 421, 729, 1799, 1850, 1925, 2466
BsmAI	GTCTC	7 cut(s)	85, 293, 850, 1140, 1552, 1825, 1859
BsmBI	CGTCTC	2 cut(s)	85, 1140
BsmFI	GGGAC	2 cut(s)	238, 2081
Bso31I	GGTCTC	1 cut(s)	1552
BsoBI	CYCGRG	2 cut(s)	1502, 1964
Bsp120I	GGGCCC	1 cut(s)	1032
Bsp1286I	GDGCHC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
Bsp68I	TCGCGA	1 cut(s)	1464
BspACI	CCGC	8 cut(s)	15, 18, 24, 253, 503, 790, 2118, 2212
BspCNI	CTCAG	7 cut(s)	67, 295, 325, 985, 1471, 1696, 1801
BspDI	ATCGAT	1 cut(s)	1671
BspFNI	CGCG	5 cut(s)	20, 22, 24, 75, 1464
BspHI	TCATGA	1 cut(s)	259
BspLI	GGNNCC	5 cut(s)	1033, 1034, 1215, 1239, 1314
BspMAI	CTGCAG	2 cut(s)	291, 2146
BspMI	ACCTGC	1 cut(s)	1282
BspPI	GGATC	2 cut(s)	740, 1946
BspQI	GCTCTTC	2 cut(s)	1619, 1878
BspTNI	GGTCTC	1 cut(s)	1552
BsrDI	GCAATG	1 cut(s)	1284
BsrFI	RCCGGY	2 cut(s)	37, 2466
BsrI	ACTGG	6 cut(s)	188, 1183, 1831, 1994, 2195, 2407
BssAI	RCCGGY	2 cut(s)	37, 2466
BssECI	CCNNGG	6 cut(s)	507, 1208, 1503, 1638, 1792, 2373
BssHII	GCGCGC	2 cut(s)	20, 73
BssT1I	CCWWGG	2 cut(s)	1638, 2373
Bst2UI	CCWGG	4 cut(s)	508, 1167, 1209, 1794
Bst4CI	ACNGT	4 cut(s)	840, 874, 1081, 1296
Bst6I	CTCTTC	4 cut(s)	175, 1619, 1878, 2170
BstAPI	GCANNNNNTGC	1 cut(s)	2276
BstBAI	YACGTR	1 cut(s)	941
BstDEI	CTNAG	9 cut(s)	54, 303, 308, 333, 527, 972, 1479, 1704, 1809
BstENI	CCTNNNNNAGG	1 cut(s)	1797
BstF5I	GGATG	9 cut(s)	709, 760, 970, 1152, 1186, 1456, 1690, 2153, 2511
BstFNI	CGCG	5 cut(s)	20, 22, 24, 75, 1464
BstHHI	GCGC	4 cut(s)	22, 24, 75, 77
BstMAI	GTCTC	7 cut(s)	85, 293, 850, 1140, 1552, 1825, 1859
BstMCI	CGRYCG	2 cut(s)	15, 2471
BstNI	CCWGG	4 cut(s)	508, 1167, 1209, 1794
BstNSI	RCATGY	3 cut(s)	383, 482, 1253
BstSCI	CCNGG	4 cut(s)	506, 1165, 1207, 1792
BstSFI	CTRYAG	3 cut(s)	287, 2112, 2142
BstSLI	GKGCMC	1 cut(s)	1036
BstUI	CGCG	5 cut(s)	20, 22, 24, 75, 1464
BstV2I	GAAGAC	1 cut(s)	1575
BstX2I	RGATCY	1 cut(s)	329
BstXI	CCANNNNNNTGG	1 cut(s)	2248
BstYI	RGATCY	1 cut(s)	329
BstZI	CGGCCG	2 cut(s)	12, 2468
Bsu15I	ATCGAT	1 cut(s)	1671
BsuTUI	ATCGAT	1 cut(s)	1671
BtgZI	GCGATG	1 cut(s)	56
BtsCI	GGATG	9 cut(s)	709, 760, 970, 1152, 1186, 1456, 1690, 2153, 2511
BtsI	GCAGTG	2 cut(s)	74, 1636
BtsIMutI	CAGTG	7 cut(s)	74, 927, 1301, 1636, 1854, 1987, 2202
BtuMI	TCGCGA	1 cut(s)	1464
BveI	ACCTGC	1 cut(s)	1282
CaiI	CAGNNNCTG	2 cut(s)	581, 1478
CciI	TCATGA	1 cut(s)	259
CfoI	GCGC	4 cut(s)	22, 24, 75, 77
Cfr10I	RCCGGY	2 cut(s)	37, 2466
Cfr13I	GGNCC	7 cut(s)	232, 510, 520, 1032, 1033, 1127, 2387
ClaI	ATCGAT	1 cut(s)	1671
CseI	GACGC	2 cut(s)	55, 1957
Csp6I	GTAC	3 cut(s)	875, 1797, 2417
CviQI	GTAC	3 cut(s)	875, 1797, 2417
DdeI	CTNAG	9 cut(s)	54, 303, 308, 333, 527, 972, 1479, 1704, 1809
EaeI	YGGCCR	4 cut(s)	12, 2457, 2464, 2468
EagI	CGGCCG	2 cut(s)	12, 2468
Eam1104I	CTCTTC	4 cut(s)	175, 1619, 1878, 2170
EarI	CTCTTC	4 cut(s)	175, 1619, 1878, 2170
Ecl136II	GAGCTC	4 cut(s)	314, 2093, 2441, 2475
EclXI	CGGCCG	2 cut(s)	12, 2468
Eco130I	CCWWGG	2 cut(s)	1638, 2373
Eco24I	GRGCYC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
Eco31I	GGTCTC	1 cut(s)	1552
Eco32I	GATATC	1 cut(s)	1491
Eco47I	GGWCC	2 cut(s)	232, 1127
Eco52I	CGGCCG	2 cut(s)	12, 2468
Eco53kI	GAGCTC	4 cut(s)	314, 2093, 2441, 2475
Eco57I	CTGAAG	3 cut(s)	386, 392, 869
Eco72I	CACGTG	1 cut(s)	941
Eco88I	CYCGRG	2 cut(s)	1502, 1964
EcoICRI	GAGCTC	4 cut(s)	314, 2093, 2441, 2475
EcoNI	CCTNNNNNAGG	1 cut(s)	1797
EcoO109I	RGGNCCY	3 cut(s)	520, 1032, 1033
EcoRI	GAATTC	1 cut(s)	1048
EcoRII	CCWGG	4 cut(s)	506, 1165, 1207, 1792
EcoRV	GATATC	1 cut(s)	1491
EcoT14I	CCWWGG	2 cut(s)	1638, 2373
EcoT22I	ATGCAT	4 cut(s)	870, 970, 1090, 1188
EcoT38I	GRGCYC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
ErhI	CCWWGG	2 cut(s)	1638, 2373
Esp3I	CGTCTC	2 cut(s)	85, 1140
FalI	AAGNNNNNCTT	4 cut(s)	507, 539, 907, 939
FaqI	GGGAC	2 cut(s)	238, 2081
FauI	CCCGC	1 cut(s)	783
FauNDI	CATATG	2 cut(s)	294, 864
FbaI	TGATCA	2 cut(s)	1369, 1561
FblI	GTMKAC	1 cut(s)	198
FokI	GGATG	9 cut(s)	716, 767, 977, 1159, 1173, 1463, 1697, 2140, 2518
FriOI	GRGCYC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
FseI	GGCCGGCC	1 cut(s)	2470
FspBI	CTAG	3 cut(s)	1113, 1877, 2021
GlaI	GCGC	4 cut(s)	21, 23, 74, 76
GsaI	CCCAGC	2 cut(s)	595, 2406
GsuI	CTGGAG	3 cut(s)	143, 2178, 2512
HapII	CCGG	2 cut(s)	38, 2467
HgaI	GACGC	2 cut(s)	55, 1957
HhaI	GCGC	4 cut(s)	22, 24, 75, 77
Hin6I	GCGC	4 cut(s)	20, 22, 73, 75
HinP1I	GCGC	4 cut(s)	20, 22, 73, 75
HincII	GTYRAC	2 cut(s)	768, 1102
HindII	GTYRAC	2 cut(s)	768, 1102
HindIII	AAGCTT	2 cut(s)	398, 726
HinfI	GANTC	9 cut(s)	58, 935, 1523, 1598, 1613, 1811, 2206, 2237, 2302
HpaII	CCGG	2 cut(s)	38, 2467
HphI	GGTGA	4 cut(s)	727, 1186, 1542, 2201
Hpy166II	GTNNAC	3 cut(s)	199, 768, 1102
Hpy8I	GTNNAC	3 cut(s)	199, 768, 1102
Hpy99I	CGWCG	2 cut(s)	116, 1951
HpyAV	CCTTC	6 cut(s)	367, 533, 1140, 1460, 2081, 2187
HpyCH4III	ACNGT	4 cut(s)	840, 874, 1081, 1296
HpyCH4IV	ACGT	4 cut(s)	940, 1013, 1059, 2352
HpyF3I	CTNAG	9 cut(s)	54, 303, 308, 333, 527, 972, 1479, 1704, 1809
HpySE526I	ACGT	4 cut(s)	940, 1013, 1059, 2352
HspAI	GCGC	4 cut(s)	20, 22, 73, 75
KroI	GCCGGC	2 cut(s)	37, 2466
KroNI	GCCGGC	2 cut(s)	39, 2468
Ksp22I	TGATCA	2 cut(s)	1369, 1561
LguI	GCTCTTC	2 cut(s)	1619, 1878
LmnI	GCTCC	9 cut(s)	85, 118, 124, 376, 406, 424, 1318, 2090, 2438
MaeI	CTAG	3 cut(s)	1113, 1877, 2021
MaeII	ACGT	4 cut(s)	940, 1013, 1059, 2352
MaeIII	GTNAC	5 cut(s)	566, 1174, 1538, 2188, 2251
MauBI	CGCGCGCG	1 cut(s)	20
MfeI	CAATTG	2 cut(s)	710, 1122
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
MlsI	TGGCCA	1 cut(s)	2459
MluNI	TGGCCA	1 cut(s)	2459
MlyI	GAGTC	4 cut(s)	52, 1532, 1820, 2200
MmeI	TCCRAC	3 cut(s)	962, 1315, 1662
Mox20I	TGGCCA	1 cut(s)	2459
Mph1103I	ATGCAT	4 cut(s)	870, 970, 1090, 1188
MroNI	GCCGGC	2 cut(s)	37, 2466
MroXI	GAANNNNTTC	2 cut(s)	627, 690
MscI	TGGCCA	1 cut(s)	2459
MseI	TTAA	8 cut(s)	699, 1419, 1530, 1604, 1697, 2216, 2312, 2424
MslI	CAYNNNNRTG	4 cut(s)	147, 384, 1836, 1992
Msp20I	TGGCCA	1 cut(s)	2459
MspA1I	CMGCKG	3 cut(s)	253, 1922, 2080
MspI	CCGG	2 cut(s)	38, 2467
MspR9I	CCNGG	4 cut(s)	508, 1167, 1209, 1794
MunI	CAATTG	2 cut(s)	710, 1122
MvaI	CCWGG	4 cut(s)	508, 1167, 1209, 1794
MvnI	CGCG	5 cut(s)	20, 22, 24, 75, 1464
NaeI	GCCGGC	2 cut(s)	39, 2468
NdeI	CATATG	2 cut(s)	294, 864
NgoMIV	GCCGGC	2 cut(s)	37, 2466
NlaIV	GGNNCC	5 cut(s)	1033, 1034, 1215, 1239, 1314
NmeAIII	GCCGAG	1 cut(s)	2496
NmuCI	GTSAC	2 cut(s)	566, 1174
NruI	TCGCGA	1 cut(s)	1464
NsiI	ATGCAT	4 cut(s)	870, 970, 1090, 1188
NspI	RCATGY	3 cut(s)	383, 482, 1253
PaeI	GCATGC	2 cut(s)	383, 482
PagI	TCATGA	1 cut(s)	259
PalAI	GGCGCGCC	1 cut(s)	73
PauI	GCGCGC	2 cut(s)	20, 73
PciI	ACATGT	1 cut(s)	1249
PciSI	GCTCTTC	2 cut(s)	1619, 1878
PcsI	WCGNNNNNNNCGW	2 cut(s)	38, 1952
PdiI	GCCGGC	2 cut(s)	39, 2468
PdmI	GAANNNNTTC	2 cut(s)	627, 690
PfeI	GAWTC	5 cut(s)	935, 1598, 1613, 2237, 2302
PflMI	CCANNNNNTGG	1 cut(s)	1925
PleI	GAGTC	4 cut(s)	52, 1531, 1819, 2200
PmaCI	CACGTG	1 cut(s)	941
PmlI	CACGTG	1 cut(s)	941
PpsI	GAGTC	4 cut(s)	52, 1531, 1819, 2200
Ppu21I	YACGTR	1 cut(s)	941
PscI	ACATGT	1 cut(s)	1249
PshBI	ATTAAT	1 cut(s)	1530
Psp124BI	GAGCTC	4 cut(s)	316, 2095, 2443, 2477
Psp6I	CCWGG	4 cut(s)	506, 1165, 1207, 1792
PspCI	CACGTG	1 cut(s)	941
PspFI	CCCAGC	2 cut(s)	591, 2402
PspGI	CCWGG	4 cut(s)	506, 1165, 1207, 1792
PspN4I	GGNNCC	5 cut(s)	1033, 1034, 1215, 1239, 1314
PspOMI	GGGCCC	1 cut(s)	1032
PspPI	GGNCC	7 cut(s)	232, 510, 520, 1032, 1033, 1127, 2387
PstI	CTGCAG	2 cut(s)	291, 2146
PstNI	CAGNNNCTG	2 cut(s)	581, 1478
PsuI	RGATCY	1 cut(s)	329
PteI	GCGCGC	2 cut(s)	20, 73
PvuII	CAGCTG	2 cut(s)	1922, 2080
RigI	GGCCGGCC	1 cut(s)	2470
RruI	TCGCGA	1 cut(s)	1464
RsaI	GTAC	3 cut(s)	876, 1798, 2418
RsaNI	GTAC	3 cut(s)	875, 1797, 2417
RseI	CAYNNNNRTG	4 cut(s)	147, 384, 1836, 1992
SacI	GAGCTC	4 cut(s)	316, 2095, 2443, 2477
SapI	GCTCTTC	2 cut(s)	1619, 1878
SaqAI	TTAA	8 cut(s)	699, 1419, 1530, 1604, 1697, 2216, 2312, 2424
Sau96I	GGNCC	7 cut(s)	232, 510, 520, 1032, 1033, 1127, 2387
SchI	GAGTC	4 cut(s)	52, 1532, 1820, 2200
ScrFI	CCNGG	4 cut(s)	508, 1167, 1209, 1794
SduI	GDGCHC	6 cut(s)	316, 592, 1036, 2095, 2443, 2477
SfcI	CTRYAG	3 cut(s)	287, 2112, 2142
SgsI	GGCGCGCC	1 cut(s)	73
SinI	GGWCC	2 cut(s)	232, 1127
SmiMI	CAYNNNNRTG	4 cut(s)	147, 384, 1836, 1992
SmlI	CTYRAG	5 cut(s)	681, 890, 1520, 1619, 2094
SmoI	CTYRAG	5 cut(s)	681, 890, 1520, 1619, 2094
SphI	GCATGC	2 cut(s)	383, 482
SsiI	CCGC	8 cut(s)	15, 18, 24, 253, 503, 790, 2118, 2212
SspMI	CTAG	3 cut(s)	1113, 1877, 2021
SstI	GAGCTC	4 cut(s)	316, 2095, 2443, 2477
StyD4I	CCNGG	4 cut(s)	506, 1165, 1207, 1792
StyI	CCWWGG	2 cut(s)	1638, 2373
TaaI	ACNGT	4 cut(s)	840, 874, 1081, 1296
TaiI	ACGT	4 cut(s)	943, 1016, 1062, 2355
TaqI	TCGA	5 cut(s)	32, 209, 1671, 1946, 2348
TatI	WGTACW	1 cut(s)	2416
TauI	GCSGC	5 cut(s)	17, 20, 256, 506, 2120
TfiI	GAWTC	5 cut(s)	935, 1598, 1613, 2237, 2302
Tru1I	TTAA	8 cut(s)	699, 1419, 1530, 1604, 1697, 2216, 2312, 2424
Tru9I	TTAA	8 cut(s)	699, 1419, 1530, 1604, 1697, 2216, 2312, 2424
TscAI	CASTG	7 cut(s)	74, 934, 1301, 1636, 1854, 1994, 2202
TseFI	GTSAC	2 cut(s)	566, 1174
Tsp45I	GTSAC	2 cut(s)	566, 1174
TspGWI	ACGGA	1 cut(s)	1305
TspRI	CASTG	7 cut(s)	74, 934, 1301, 1636, 1854, 1994, 2202
Van91I	CCANNNNNTGG	1 cut(s)	1925
VpaK11BI	GGWCC	2 cut(s)	232, 1127
VspI	ATTAAT	1 cut(s)	1530
XagI	CCTNNNNNAGG	1 cut(s)	1797
XapI	RAATTY	7 cut(s)	949, 1048, 1258, 1458, 1714, 2358, 2479
XbaI	TCTAGA	1 cut(s)	1876
XceI	RCATGY	3 cut(s)	383, 482, 1253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	2 cut(s)	627, 690
XspI	CTAG	3 cut(s)	1113, 1877, 2021
Zsp2I	ATGCAT	4 cut(s)	870, 970, 1090, 1188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.