Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

1890342 .. 1892918

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1467 bp

ATGCTTTGTTATCGTTTTGTTGAGAAAATGGAAATTGTGCATATAATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTTGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGGAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTCGGAAGCAGCCATTGTGGATCAGTCATTTCACTAGTGTGGCTCTTTGACGTTCCCTTCAAAACAGGAAGAAAACTTATGCAAAAGGAGTTTAAGGATGAATCCACTCCCCATCATGGAGAAAACAAGAACGCTTCTAAATCTATGTCCACAACCAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCACAATGTTCTTGCTAAGGACGCAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACTTCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTACCGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCGAATGGTAATCTCAGAGAACATCTGGATGGTCAACATGGGAAAACCCTGGAGTTTAATCAGCGACTTGAAATAGCCATTGATGTTGCTCATGCCCTAACTTATCTTCATCTGTACAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATGCAGATCGAACACACATTTCTACTAAAGTGAAAGGAACCGTTGGCTACCTAGACCCGGAGTACATGAAAACATATCAACTCACCGCCAAAAGTGATATGAAGAGACCAGTTGAAGAGCGTGTCACTCTCAGATGGGCATTCAAAAAGTTGAACGAAGGAAGAACGTGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTACAGAAAATCTTTGATTTGGCCATCCAGTGTGCAGCTCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACAATAAGGGCAGACTACCTGAAAAGTCTCAAAAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

488

Amino Acids

54.58

Weight (kDa)

8.99

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	241 - 355	1.2e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	243 - 472	1.2e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	664, 762
AciI	CCGC	3 cut(s)	591, 712, 1206
AclWI	GGATC	2 cut(s)	304, 1295
AcoI	YGGCCR	5 cut(s)	606, 784, 867, 1356, 1391
AcsI	RAATTY	4 cut(s)	202, 547, 829, 842
AdeI	CACNNNGTG	1 cut(s)	620
AfaI	GTAC	7 cut(s)	93, 624, 678, 850, 1067, 1184, 1335
AfiI	CCNNNNNNNGG	2 cut(s)	392, 1177
AhlI	ACTAGT	1 cut(s)	310
AjnI	CCWGG	3 cut(s)	701, 999, 1103
AjuI	GAANNNNNNNTTGG	2 cut(s)	735, 767
AleI	CACNNNNGTG	1 cut(s)	313
Alw26I	GTCTC	2 cut(s)	1219, 1457
AlwI	GGATC	2 cut(s)	304, 1295
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	5 cut(s)	606, 784, 867, 1356, 1391
ApeKI	GCWGC	5 cut(s)	285, 449, 518, 1370, 1417
ApoI	RAATTY	4 cut(s)	202, 547, 829, 842
AspS9I	GGNCC	2 cut(s)	148, 1112
AsuC2I	CCSGG	1 cut(s)	1178
AsuHPI	GGTGA	2 cut(s)	752, 1195
AsuNHI	GCTAGC	1 cut(s)	775
AvaII	GGWCC	2 cut(s)	148, 1112
BalI	TGGCCA	3 cut(s)	786, 869, 1358
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	297, 461, 505, 1382, 1429
BccI	CCATC	6 cut(s)	396, 776, 974, 1111, 1248, 1367
BciT130I	CCWGG	3 cut(s)	703, 1001, 1105
BclI	TGATCA	1 cut(s)	877
BcnI	CCSGG	1 cut(s)	1178
BcoDI	GTCTC	2 cut(s)	1219, 1457
BcuI	ACTAGT	1 cut(s)	310
BfaI	CTAG	6 cut(s)	311, 630, 636, 776, 902, 1172
BfmI	CTRYAG	1 cut(s)	1337
BisI	GCNGC	6 cut(s)	286, 450, 519, 591, 1371, 1418
BlsI	GCNGC	6 cut(s)	287, 451, 520, 592, 1372, 1419
Bme1390I	CCNGG	4 cut(s)	703, 1001, 1105, 1178
Bme18I	GGWCC	2 cut(s)	148, 1112
BmgT120I	GGNCC	2 cut(s)	148, 1112
BmiI	GGNNCC	2 cut(s)	275, 1159
BmrFI	CCNGG	4 cut(s)	703, 1001, 1105, 1178
BmsI	GCATC	1 cut(s)	1111
BmtI	GCTAGC	1 cut(s)	779
BoxI	GACNNNNGTC	1 cut(s)	670
BpmI	CTGGAG	1 cut(s)	1022
Bpu10I	CCTNAGC	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	1178
BsaBI	GATNNNNATC	1 cut(s)	1125
BsaI	GGTCTC	1 cut(s)	1219
BsaJI	CCNNGG	3 cut(s)	277, 702, 999
BsaXI	ACNNNNNCTCC	2 cut(s)	1406, 1436
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 1177
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	4 cut(s)	151, 609, 1229, 1363
Bse8I	GATNNNNATC	1 cut(s)	1125
BseBI	CCWGG	3 cut(s)	703, 1001, 1105
BseDI	CCNNGG	3 cut(s)	277, 702, 999
BseGI	GGATG	5 cut(s)	379, 919, 985, 1126, 1359
BseJI	GATNNNNATC	1 cut(s)	1125
BseLI	CCNNNNNNNGG	2 cut(s)	392, 1177
BseMII	CTCAG	3 cut(s)	673, 979, 1264
BseNI	ACTGG	4 cut(s)	151, 609, 1229, 1363
BseXI	GCAGC	5 cut(s)	297, 461, 505, 1382, 1429
BsgI	GTGCAG	1 cut(s)	1389
BshFI	GGCC	5 cut(s)	608, 786, 869, 1358, 1393
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	605, 1178
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	392, 1177
BsmAI	GTCTC	2 cut(s)	1219, 1457
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	1259
BsnI	GGCC	5 cut(s)	608, 786, 869, 1358, 1393
Bso31I	GGTCTC	1 cut(s)	1219
Bsp1407I	TGTACA	2 cut(s)	676, 1065
Bsp143I	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
BspACI	CCGC	3 cut(s)	591, 712, 1206
BspANI	GGCC	5 cut(s)	608, 786, 869, 1358, 1393
BspCNI	CTCAG	3 cut(s)	672, 978, 1263
BspLI	GGNNCC	2 cut(s)	275, 1159
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	2 cut(s)	304, 1295
BspQI	GCTCTTC	2 cut(s)	240, 1230
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	1219
BsrFI	RCCGGY	1 cut(s)	604
BsrGI	TGTACA	2 cut(s)	676, 1065
BsrI	ACTGG	4 cut(s)	151, 609, 1229, 1363
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	3 cut(s)	277, 702, 999
BssMI	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
Bst2UI	CCWGG	3 cut(s)	703, 1001, 1105
Bst4CI	ACNGT	5 cut(s)	132, 439, 760, 1162, 1408
Bst6I	CTCTTC	3 cut(s)	240, 1217, 1230
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	2 cut(s)	676, 1065
BstC8I	GCNNGC	4 cut(s)	102, 777, 1073, 1077
BstDEI	CTNAG	4 cut(s)	537, 659, 965, 1250
BstF5I	GGATG	5 cut(s)	379, 919, 985, 1126, 1359
BstKTI	GATC	5 cut(s)	299, 880, 1129, 1303, 1390
BstMAI	GTCTC	2 cut(s)	1219, 1457
BstMBI	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 282, 449, 458, 542, 776, 1085, 1325
BstNI	CCWGG	3 cut(s)	703, 1001, 1105
BstNSI	RCATGY	1 cut(s)	1075
BstPAI	GACNNNNGTC	1 cut(s)	670
BstSCI	CCNGG	4 cut(s)	701, 999, 1103, 1176
BstSFI	CTRYAG	1 cut(s)	1337
BstV1I	GCAGC	5 cut(s)	297, 461, 505, 1382, 1429
BsuRI	GGCC	5 cut(s)	608, 786, 869, 1358, 1393
BtsCI	GGATG	5 cut(s)	379, 919, 985, 1126, 1359
BtsIMutI	CAGTG	3 cut(s)	213, 1370, 1413
Cac8I	GCNNGC	4 cut(s)	102, 777, 1073, 1077
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	148, 1112
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	7 cut(s)	92, 623, 677, 849, 1066, 1183, 1334
CviAII	CATG	7 cut(s)	392, 587, 989, 1043, 1072, 1186, 1399
CviQI	GTAC	7 cut(s)	92, 623, 677, 849, 1066, 1183, 1334
DdeI	CTNAG	4 cut(s)	537, 659, 965, 1250
DpnI	GATC	5 cut(s)	298, 879, 1128, 1302, 1389
DpnII	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
DraIII	CACNNNGTG	1 cut(s)	620
EaeI	YGGCCR	5 cut(s)	606, 784, 867, 1356, 1391
Eam1104I	CTCTTC	3 cut(s)	240, 1217, 1230
EarI	CTCTTC	3 cut(s)	240, 1217, 1230
Eco31I	GGTCTC	1 cut(s)	1219
Eco47I	GGWCC	2 cut(s)	148, 1112
EcoRI	GAATTC	2 cut(s)	202, 842
EcoRII	CCWGG	3 cut(s)	701, 999, 1103
FaeI	CATG	7 cut(s)	395, 590, 992, 1046, 1075, 1189, 1402
FalI	AAGNNNNNCTT	4 cut(s)	806, 838, 846, 878
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	7 cut(s)	391, 586, 988, 1042, 1071, 1185, 1398
FauI	CCCGC	1 cut(s)	719
FbaI	TGATCA	1 cut(s)	877
FblI	GTMKAC	2 cut(s)	664, 762
Fnu4HI	GCNGC	6 cut(s)	286, 450, 519, 591, 1371, 1418
FokI	GGATG	5 cut(s)	386, 926, 992, 1133, 1346
Fsp4HI	GCNGC	6 cut(s)	286, 450, 519, 591, 1371, 1418
FspBI	CTAG	6 cut(s)	311, 630, 636, 776, 902, 1172
GluI	GCNGC	6 cut(s)	286, 450, 519, 591, 1371, 1418
GsuI	CTGGAG	1 cut(s)	1022
HaeIII	GGCC	5 cut(s)	608, 786, 869, 1358, 1393
HapII	CCGG	2 cut(s)	605, 1178
HgaI	GACGC	1 cut(s)	551
Hin1II	CATG	7 cut(s)	395, 590, 992, 1046, 1075, 1189, 1402
HincII	GTYRAC	1 cut(s)	986
HindII	GTYRAC	1 cut(s)	986
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	4 cut(s)	377, 583, 691, 886
HpaII	CCGG	2 cut(s)	605, 1178
HphI	GGTGA	2 cut(s)	752, 1195
Hpy166II	GTNNAC	7 cut(s)	426, 614, 623, 665, 763, 986, 1425
Hpy188I	TCNGA	6 cut(s)	281, 696, 885, 968, 1116, 1253
Hpy188III	TCNNGA	1 cut(s)	977
Hpy8I	GTNNAC	7 cut(s)	426, 614, 623, 665, 763, 986, 1425
HpyAV	CCTTC	6 cut(s)	172, 343, 737, 808, 911, 1271
HpyCH4III	ACNGT	5 cut(s)	132, 439, 760, 1162, 1408
HpyCH4IV	ACGT	4 cut(s)	327, 805, 1286, 1332
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 282, 449, 458, 542, 776, 1085, 1325
HpyF3I	CTNAG	4 cut(s)	537, 659, 965, 1250
HpySE526I	ACGT	4 cut(s)	327, 805, 1286, 1332
Hsp92II	CATG	7 cut(s)	395, 590, 992, 1046, 1075, 1189, 1402
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
LguI	GCTCTTC	2 cut(s)	240, 1230
LmnI	GCTCC	3 cut(s)	458, 1378, 1414
Lsp1109I	GCAGC	5 cut(s)	297, 461, 505, 1382, 1429
LweI	GCATC	1 cut(s)	1111
MaeI	CTAG	6 cut(s)	311, 630, 636, 776, 902, 1172
MaeII	ACGT	4 cut(s)	327, 805, 1286, 1332
MaeIII	GTNAC	1 cut(s)	1243
MalI	GATC	5 cut(s)	298, 879, 1128, 1302, 1389
MboI	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
MboII	GAAGA	7 cut(s)	227, 357, 561, 1049, 1234, 1247, 1293
MfeI	CAATTG	1 cut(s)	95
MlsI	TGGCCA	3 cut(s)	786, 869, 1358
MluNI	TGGCCA	3 cut(s)	786, 869, 1358
MnlI	CCTC	5 cut(s)	124, 262, 287, 1306, 1454
Mox20I	TGGCCA	3 cut(s)	786, 869, 1358
MscI	TGGCCA	3 cut(s)	786, 869, 1358
MseI	TTAA	5 cut(s)	53, 74, 369, 501, 1008
MslI	CAYNNNNRTG	2 cut(s)	313, 978
Msp20I	TGGCCA	3 cut(s)	786, 869, 1358
MspA1I	CMGCKG	2 cut(s)	593, 1420
MspI	CCGG	2 cut(s)	605, 1178
MspR9I	CCNGG	4 cut(s)	703, 1001, 1105, 1178
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	1259
MvaI	CCWGG	3 cut(s)	703, 1001, 1105
MwoI	GCNNNNNNNGC	8 cut(s)	110, 282, 449, 458, 542, 776, 1085, 1325
NciI	CCSGG	1 cut(s)	1178
NdeII	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
NheI	GCTAGC	1 cut(s)	775
NlaIII	CATG	7 cut(s)	395, 590, 992, 1046, 1075, 1189, 1402
NlaIV	GGNNCC	2 cut(s)	275, 1159
NmeAIII	GCCGAG	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	1243
NspI	RCATGY	1 cut(s)	1075
OliI	CACNNNNGTG	1 cut(s)	313
PaeI	GCATGC	1 cut(s)	1075
PciSI	GCTCTTC	2 cut(s)	240, 1230
PctI	GAATGC	1 cut(s)	1259
PfeI	GAWTC	4 cut(s)	377, 583, 691, 886
PkrI	GCNGC	6 cut(s)	287, 451, 520, 592, 1372, 1419
PshAI	GACNNNNGTC	1 cut(s)	670
Psp6I	CCWGG	3 cut(s)	701, 999, 1103
PspGI	CCWGG	3 cut(s)	701, 999, 1103
PspN4I	GGNNCC	2 cut(s)	275, 1159
PspPI	GGNCC	2 cut(s)	148, 1112
PstNI	CAGNNNCTG	1 cut(s)	518
PvuII	CAGCTG	1 cut(s)	1420
RsaI	GTAC	7 cut(s)	93, 624, 678, 850, 1067, 1184, 1335
RsaNI	GTAC	7 cut(s)	92, 623, 677, 849, 1066, 1183, 1334
RseI	CAYNNNNRTG	2 cut(s)	313, 978
SapI	GCTCTTC	2 cut(s)	240, 1230
SaqAI	TTAA	5 cut(s)	53, 74, 369, 501, 1008
SatI	GCNGC	6 cut(s)	286, 450, 519, 591, 1371, 1418
Sau3AI	GATC	5 cut(s)	296, 877, 1126, 1300, 1387
Sau96I	GGNCC	2 cut(s)	148, 1112
ScrFI	CCNGG	4 cut(s)	703, 1001, 1105, 1178
SfaNI	GCATC	1 cut(s)	1111
SfcI	CTRYAG	1 cut(s)	1337
SinI	GGWCC	2 cut(s)	148, 1112
SmiMI	CAYNNNNRTG	2 cut(s)	313, 978
SpeI	ACTAGT	1 cut(s)	310
SphI	GCATGC	1 cut(s)	1075
SsiI	CCGC	3 cut(s)	591, 712, 1206
SspMI	CTAG	6 cut(s)	311, 630, 636, 776, 902, 1172
StyD4I	CCNGG	4 cut(s)	701, 999, 1103, 1176
TaaI	ACNGT	5 cut(s)	132, 439, 760, 1162, 1408
TaiI	ACGT	4 cut(s)	330, 808, 1289, 1335
TaqI	TCGA	2 cut(s)	1129, 1381
TatI	WGTACW	3 cut(s)	676, 1065, 1182
TauI	GCSGC	1 cut(s)	593
TfiI	GAWTC	4 cut(s)	377, 583, 691, 886
Tru1I	TTAA	5 cut(s)	53, 74, 369, 501, 1008
Tru9I	TTAA	5 cut(s)	53, 74, 369, 501, 1008
TscAI	CASTG	3 cut(s)	213, 1370, 1413
TseFI	GTSAC	1 cut(s)	1243
TseI	GCWGC	5 cut(s)	285, 449, 518, 1370, 1417
Tsp45I	GTSAC	1 cut(s)	1243
TspDTI	ATGAA	7 cut(s)	390, 930, 939, 1049, 1202, 1235, 1415
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	3 cut(s)	213, 1370, 1413
VpaK11BI	GGWCC	2 cut(s)	148, 1112
XapI	RAATTY	4 cut(s)	202, 547, 829, 842
XceI	RCATGY	1 cut(s)	1075
XmiI	GTMKAC	2 cut(s)	664, 762
XspI	CTAG	6 cut(s)	311, 630, 636, 776, 902, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.