FvH4_1g02470

Calmodulin-binding receptor-like cytoplasmic kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
1375410 .. 1380095
4686 bp
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UTR
Exon/CDS
Intron
FvH4_1g02470.t2

Sequence Viewer

Length: 1572 bp
ATGCTTCTTTATCGTTTCGTAGAGAAAATGAAGATTGCGCATATTATTTCGTTAAAGATGGCAGTAACTATATTGAGTTTGTTGCTGTTGATACAATTGCTAGCAATCCCTGCCTCCGGATTAGTCTTACAGTCAAAGGTTTGTAAGGATCAGTTTGCCCATGCGAGTTCTAATGGTCAGGACTTGTTTTACATAAATGGGAATTCAGTAGAGAAAGCTTTGTTCTGTGATGCTCTTCAGACATACTATGCAAATGGTTGCATTTTGGAGGGCTACCTTGGAAGCAGATATTGTGGATCGGTCCTTTCACTAGTTGATTTCCCCTTCAAAACAGGAAGAAAACTTATGCAAAAGGAGTTGAGAGATGAATCCACTTTCCATCGTGGAGAAGACAAGAACACTTTTGAATCTTTGTCCACGACCAAAAAAGTTGGAATAGCATCAGGTGGAGCGTTATTGGTGTGTTGTGTTTTCCTTTGCCCCTGCTTTTATAAGAAAAGGAGAGAAGCTGCTCACAATGTTCTTGATGAGGACGTGAATTCAATGGATAATTCAGCTTCTAATTTTGAAGTGAATCATGCCGTTGAAAAGATACCGGCCAGTCCACATCGTGTACCACCTAGTCCTAGATATACAAACTCTCCAAAACTAAGTAGACTTGGGTCTGTACATCTCAATTTGAGTCAGATTGCCAGGGTAACCCGCAACTTCTCAAAATCGCATCTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAGGTTGTTTCTATAAAACGCGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTAGCGAAGTCGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGATTGATCATCACAGAGTTTGTGCCGAATGGTAATCTTAGAGAACATCTGGATGGTCTACTTGGGAAAACCCTGGAGTTCAATCAGCGACTTGAAATTGCCATTGATGTTGCTCATGCCCTTACTTATCTTCATCTATATGCAGAAAAGCCAATCATCCATCGAGACGTGAAATCATCCAACATTCTTCTGACAGAAAGTATGAGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATACTGATCGAACACACATTTCAACTAAAGTGAAAGGAACTGTTGGCTACCTAGACCCGGAGTATATGAAAACATATCAACTCACTGCCAAAAGTGATGTCTACTCATTTGGGATATTACTTATAGAAATCGTGACAGGTCGCCGTCCAGTGGAGTTGAAGAGACCAGTTGAAGAGCGTGTCACTCTCAGATGGGCATTTAAAAAGTTAAATGAAGGACGTATGATGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAGATGCAGACGTGCTGATGAAAATCTTTGATCTGGCAATCCAGTGTGCAGCTCCAGTTCGAGCTGATCGGCCAGACATGAAAGCAGTGGGAGAGCAGCTGTGGACAATAAGGGCAGACTACGTTAAAAGTCTCAAGAGAGGGTAG

Protein Analysis

524

Amino Acids

58.7

Weight (kDa)

8.82

Isoelectric Point (pI)

33.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 231 - 440 3e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 233 - 502 2.1e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
Acc16I TGCGCA 1 cut(s) 39
AccI GTMKAC 4 cut(s) 655, 753, 976, 1269
AccII CGCG 1 cut(s) 798
AccIII TCCGGA 1 cut(s) 116
AciI CCGC 1 cut(s) 703
AclWI GGATC 3 cut(s) 156, 304, 1400
AcoI YGGCCR 4 cut(s) 597, 775, 858, 1496
AcsI RAATTY 4 cut(s) 202, 538, 820, 833
AcuI CTGAAG 1 cut(s) 221
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 2 cut(s) 615, 669
AfiI CCNNNNNNNGG 3 cut(s) 116, 1225, 1318
AhlI ACTAGT 1 cut(s) 310
AjiI CACGTC 3 cut(s) 535, 1087, 1438
AjnI CCWGG 4 cut(s) 692, 777, 990, 1151
AjuI GAANNNNNNNTTGG 2 cut(s) 726, 758
Alw26I GTCTC 3 cut(s) 1077, 1324, 1562
AlwI GGATC 3 cut(s) 156, 304, 1400
Aor13HI TCCGGA 1 cut(s) 116
AoxI GGCC 4 cut(s) 597, 775, 858, 1496
ApeKI GCWGC 3 cut(s) 509, 1475, 1522
ApoI RAATTY 4 cut(s) 202, 538, 820, 833
ArsI GACNNNNNNTTYG 2 cut(s) 1251, 1283
AspLEI GCGC 2 cut(s) 40, 800
AspS9I GGNCC 2 cut(s) 301, 1160
AsuC2I CCSGG 1 cut(s) 1226
AsuHPI GGTGA 1 cut(s) 743
AsuNHI GCTAGC 2 cut(s) 100, 766
AvaII GGWCC 2 cut(s) 301, 1160
BalI TGGCCA 2 cut(s) 777, 860
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 3 cut(s) 496, 1487, 1534
BccI CCATC 8 cut(s) 52, 387, 767, 965, 1086, 1159, 1353, 1387
BceAI ACGGC 2 cut(s) 566, 1296
BciT130I CCWGG 4 cut(s) 694, 779, 992, 1153
BciVI GTATCC 1 cut(s) 1162
BclI TGATCA 2 cut(s) 868, 924
BcnI CCSGG 1 cut(s) 1226
BcoDI GTCTC 3 cut(s) 1077, 1324, 1562
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 7 cut(s) 101, 311, 621, 627, 767, 893, 1220
BfmI CTRYAG 1 cut(s) 1425
BfuI GTATCC 1 cut(s) 1162
BisI GCNGC 3 cut(s) 510, 1476, 1523
BlsI GCNGC 3 cut(s) 511, 1477, 1524
Bme1390I CCNGG 5 cut(s) 694, 779, 992, 1153, 1226
Bme18I GGWCC 2 cut(s) 301, 1160
BmgBI CACGTC 3 cut(s) 535, 1087, 1438
BmgT120I GGNCC 2 cut(s) 301, 1160
BmrFI CCNGG 5 cut(s) 694, 779, 992, 1153, 1226
BmsI GCATC 4 cut(s) 220, 449, 730, 1420
BmtI GCTAGC 2 cut(s) 104, 770
BoxI GACNNNNGTC 1 cut(s) 661
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 2 cut(s) 1013, 1464
BpuEI CTTGAG 1 cut(s) 1544
BpuMI CCSGG 1 cut(s) 1226
BsaBI GATNNNNATC 2 cut(s) 1173, 1448
BsaI GGTCTC 1 cut(s) 1324
BsaJI CCNNGG 3 cut(s) 277, 693, 990
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 625, 655
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 1225, 1318
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 5 cut(s) 600, 1316, 1334, 1468, 1481
Bse8I GATNNNNATC 2 cut(s) 1173, 1448
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 4 cut(s) 694, 779, 992, 1153
BseDI CCNNGG 3 cut(s) 277, 693, 990
BseGI GGATG 4 cut(s) 910, 976, 1074, 1094
BseJI GATNNNNATC 2 cut(s) 1173, 1448
BseLI CCNNNNNNNGG 3 cut(s) 116, 1225, 1318
BseMII CTCAG 1 cut(s) 1369
BseNI ACTGG 5 cut(s) 600, 1316, 1334, 1468, 1481
BseXI GCAGC 3 cut(s) 496, 1487, 1534
BsgI GTGCAG 1 cut(s) 1494
Bsh1236I CGCG 1 cut(s) 798
BshFI GGCC 4 cut(s) 599, 777, 860, 1498
BsiSI CCGG 3 cut(s) 117, 596, 1226
BslI CCNNNNNNNGG 3 cut(s) 116, 1225, 1318
BsmAI GTCTC 3 cut(s) 1077, 1324, 1562
BsmBI CGTCTC 1 cut(s) 1077
BsnI GGCC 4 cut(s) 599, 777, 860, 1498
Bso31I GGTCTC 1 cut(s) 1324
Bsp13I TCCGGA 1 cut(s) 116
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
BspACI CCGC 1 cut(s) 703
BspANI GGCC 4 cut(s) 599, 777, 860, 1498
BspCNI CTCAG 1 cut(s) 1368
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 1 cut(s) 798
BspOI GCTAGC 2 cut(s) 104, 770
BspPI GGATC 3 cut(s) 156, 304, 1400
BspQI GCTCTTC 2 cut(s) 240, 1335
BspTNI GGTCTC 1 cut(s) 1324
BsrFI RCCGGY 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 5 cut(s) 600, 1316, 1334, 1468, 1481
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 3 cut(s) 277, 693, 990
BssMI GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
BssT1I CCWWGG 1 cut(s) 277
Bst2UI CCWGG 4 cut(s) 694, 779, 992, 1153
Bst4CI ACNGT 3 cut(s) 132, 751, 1210
Bst6I CTCTTC 3 cut(s) 240, 1322, 1335
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 667
BstC8I GCNNGC 2 cut(s) 102, 768
BstDEI CTNAG 3 cut(s) 650, 956, 1355
BstEII GGTNACC 1 cut(s) 697
BstF5I GGATG 4 cut(s) 910, 976, 1074, 1094
BstFNI CGCG 1 cut(s) 798
BstHHI GCGC 2 cut(s) 40, 800
BstKTI GATC 8 cut(s) 151, 299, 871, 927, 1177, 1408, 1459, 1495
BstMAI GTCTC 3 cut(s) 1077, 1324, 1562
BstMBI GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
BstMWI GCNNNNNNNGC 4 cut(s) 110, 767, 1133, 1430
BstNI CCWGG 4 cut(s) 694, 779, 992, 1153
BstPAI GACNNNNGTC 1 cut(s) 661
BstPI GGTNACC 1 cut(s) 697
BstSCI CCNGG 5 cut(s) 692, 777, 990, 1151, 1224
BstSFI CTRYAG 1 cut(s) 1425
BstUI CGCG 1 cut(s) 798
BstV1I GCAGC 3 cut(s) 496, 1487, 1534
BstV2I GAAGAC 1 cut(s) 396
BsuI GTATCC 1 cut(s) 1162
BsuRI GGCC 4 cut(s) 599, 777, 860, 1498
BtrI CACGTC 3 cut(s) 535, 1087, 1438
BtsCI GGATG 4 cut(s) 910, 976, 1074, 1094
BtsI GCAGTG 2 cut(s) 1251, 1518
BtsIMutI CAGTG 4 cut(s) 1251, 1323, 1475, 1518
Cac8I GCNNGC 2 cut(s) 102, 768
CfoI GCGC 2 cut(s) 40, 800
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 301, 1160
Csp6I GTAC 2 cut(s) 614, 668
CviAII CATG 4 cut(s) 161, 578, 1034, 1504
CviQI GTAC 2 cut(s) 614, 668
DdeI CTNAG 3 cut(s) 650, 956, 1355
DpnI GATC 8 cut(s) 150, 298, 870, 926, 1176, 1407, 1458, 1494
DpnII GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
DraI TTTAAA 1 cut(s) 1369
DraIII CACNNNGTG 1 cut(s) 611
EaeI YGGCCR 4 cut(s) 597, 775, 858, 1496
Eam1104I CTCTTC 3 cut(s) 240, 1322, 1335
EarI CTCTTC 3 cut(s) 240, 1322, 1335
Eco130I CCWWGG 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 1324
Eco47I GGWCC 2 cut(s) 301, 1160
Eco57I CTGAAG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 697
EcoO65I GGTNACC 1 cut(s) 697
EcoRI GAATTC 3 cut(s) 202, 538, 833
EcoRII CCWGG 4 cut(s) 692, 777, 990, 1151
EcoT14I CCWWGG 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 277
Esp3I CGTCTC 1 cut(s) 1077
FaeI CATG 4 cut(s) 164, 581, 1037, 1507
FalI AAGNNNNNCTT 4 cut(s) 797, 829, 837, 869
FatI CATG 4 cut(s) 160, 577, 1033, 1503
FauI CCCGC 1 cut(s) 710
FbaI TGATCA 2 cut(s) 868, 924
FblI GTMKAC 4 cut(s) 655, 753, 976, 1269
Fnu4HI GCNGC 3 cut(s) 510, 1476, 1523
FokI GGATG 4 cut(s) 917, 983, 1061, 1081
Fsp4HI GCNGC 3 cut(s) 510, 1476, 1523
FspBI CTAG 7 cut(s) 101, 311, 621, 627, 767, 893, 1220
FspI TGCGCA 1 cut(s) 39
GlaI GCGC 2 cut(s) 39, 799
GluI GCNGC 3 cut(s) 510, 1476, 1523
GsuI CTGGAG 2 cut(s) 1013, 1464
HaeIII GGCC 4 cut(s) 599, 777, 860, 1498
HapII CCGG 3 cut(s) 117, 596, 1226
HhaI GCGC 2 cut(s) 40, 800
Hin1II CATG 4 cut(s) 164, 581, 1037, 1507
Hin6I GCGC 2 cut(s) 38, 798
HinP1I GCGC 2 cut(s) 38, 798
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 5 cut(s) 368, 407, 574, 682, 877
HpaII CCGG 3 cut(s) 117, 596, 1226
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 8 cut(s) 417, 605, 614, 656, 754, 977, 1270, 1530
Hpy188I TCNGA 6 cut(s) 240, 687, 876, 1110, 1164, 1358
Hpy188III TCNNGA 7 cut(s) 117, 179, 524, 968, 1082, 1300, 1561
Hpy8I GTNNAC 8 cut(s) 417, 605, 614, 656, 754, 977, 1270, 1530
HpyAV CCTTC 5 cut(s) 334, 728, 799, 902, 1376
HpyCH4III ACNGT 3 cut(s) 132, 751, 1210
HpyCH4IV ACGT 5 cut(s) 534, 1086, 1387, 1437, 1548
HpyCH4V TGCA 8 cut(s) 251, 261, 349, 826, 1061, 1412, 1433, 1475
HpyF10VI GCNNNNNNNGC 4 cut(s) 110, 767, 1133, 1430
HpyF3I CTNAG 3 cut(s) 650, 956, 1355
HpySE526I ACGT 5 cut(s) 534, 1086, 1387, 1437, 1548
Hsp92II CATG 4 cut(s) 164, 581, 1037, 1507
HspAI GCGC 2 cut(s) 38, 798
Kpn2I TCCGGA 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 868, 924
Kzo9I GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
LguI GCTCTTC 2 cut(s) 240, 1335
LmnI GCTCC 2 cut(s) 449, 1483
Lsp1109I GCAGC 3 cut(s) 496, 1487, 1534
LweI GCATC 4 cut(s) 220, 449, 730, 1420
MaeI CTAG 7 cut(s) 101, 311, 621, 627, 767, 893, 1220
MaeII ACGT 5 cut(s) 534, 1086, 1387, 1437, 1548
MaeIII GTNAC 4 cut(s) 64, 697, 1300, 1348
MalI GATC 8 cut(s) 150, 298, 870, 926, 1176, 1407, 1458, 1494
MboI GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
MboII GAAGA 8 cut(s) 43, 227, 348, 401, 1040, 1097, 1339, 1352
MfeI CAATTG 1 cut(s) 95
MlsI TGGCCA 2 cut(s) 777, 860
MluNI TGGCCA 2 cut(s) 777, 860
MlyI GAGTC 1 cut(s) 691
MmeI TCCRAC 2 cut(s) 412, 1122
MnlI CCTC 5 cut(s) 124, 262, 523, 1411, 1559
Mox20I TGGCCA 2 cut(s) 777, 860
MroI TCCGGA 1 cut(s) 116
MscI TGGCCA 2 cut(s) 777, 860
MseI TTAA 4 cut(s) 53, 1368, 1376, 1551
MslI CAYNNNNRTG 2 cut(s) 969, 1056
Msp20I TGGCCA 2 cut(s) 777, 860
MspA1I CMGCKG 1 cut(s) 1525
MspI CCGG 3 cut(s) 117, 596, 1226
MspR9I CCNGG 5 cut(s) 694, 779, 992, 1153, 1226
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 4 cut(s) 694, 779, 992, 1153
MvnI CGCG 1 cut(s) 798
MwoI GCNNNNNNNGC 4 cut(s) 110, 767, 1133, 1430
NciI CCSGG 1 cut(s) 1226
NdeII GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
NheI GCTAGC 2 cut(s) 100, 766
NlaIII CATG 4 cut(s) 164, 581, 1037, 1507
NmeAIII GCCGAG 1 cut(s) 742
NmuCI GTSAC 2 cut(s) 1300, 1348
NsbI TGCGCA 1 cut(s) 39
PciSI GCTCTTC 2 cut(s) 240, 1335
PfeI GAWTC 4 cut(s) 368, 407, 574, 877
PkrI GCNGC 3 cut(s) 511, 1477, 1524
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PshAI GACNNNNGTC 1 cut(s) 661
PsiI TTATAA 1 cut(s) 492
Psp6I CCWGG 4 cut(s) 692, 777, 990, 1151
PspEI GGTNACC 1 cut(s) 697
PspGI CCWGG 4 cut(s) 692, 777, 990, 1151
PspPI GGNCC 2 cut(s) 301, 1160
PvuII CAGCTG 1 cut(s) 1525
RsaI GTAC 2 cut(s) 615, 669
RsaNI GTAC 2 cut(s) 614, 668
RseI CAYNNNNRTG 2 cut(s) 969, 1056
SapI GCTCTTC 2 cut(s) 240, 1335
SaqAI TTAA 4 cut(s) 53, 1368, 1376, 1551
SatI GCNGC 3 cut(s) 510, 1476, 1523
Sau3AI GATC 8 cut(s) 148, 296, 868, 924, 1174, 1405, 1456, 1492
Sau96I GGNCC 2 cut(s) 301, 1160
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 5 cut(s) 694, 779, 992, 1153, 1226
SfaNI GCATC 4 cut(s) 220, 449, 730, 1420
SfcI CTRYAG 1 cut(s) 1425
SinI GGWCC 2 cut(s) 301, 1160
SmiMI CAYNNNNRTG 2 cut(s) 969, 1056
SmlI CTYRAG 1 cut(s) 1559
SmoI CTYRAG 1 cut(s) 1559
SpeI ACTAGT 1 cut(s) 310
SsiI CCGC 1 cut(s) 703
SspMI CTAG 7 cut(s) 101, 311, 621, 627, 767, 893, 1220
StyD4I CCNGG 5 cut(s) 692, 777, 990, 1151, 1224
StyI CCWWGG 1 cut(s) 277
TaaI ACNGT 3 cut(s) 132, 751, 1210
TaiI ACGT 5 cut(s) 537, 1089, 1390, 1440, 1551
TaqI TCGA 4 cut(s) 849, 1081, 1177, 1486
TaqII GACCGA 1 cut(s) 289
TatI WGTACW 1 cut(s) 667
TfiI GAWTC 4 cut(s) 368, 407, 574, 877
Tru1I TTAA 4 cut(s) 53, 1368, 1376, 1551
Tru9I TTAA 4 cut(s) 53, 1368, 1376, 1551
TscAI CASTG 4 cut(s) 1258, 1323, 1475, 1518
TseFI GTSAC 2 cut(s) 1300, 1348
TseI GCWGC 3 cut(s) 509, 1475, 1522
Tsp45I GTSAC 2 cut(s) 1300, 1348
TspDTI ATGAA 9 cut(s) 44, 381, 921, 930, 1040, 1250, 1395, 1460, 1520
TspRI CASTG 4 cut(s) 1258, 1323, 1475, 1518
VpaK11BI GGWCC 2 cut(s) 301, 1160
XapI RAATTY 4 cut(s) 202, 538, 820, 833
XmiI GTMKAC 4 cut(s) 655, 753, 976, 1269
XspI CTAG 7 cut(s) 101, 311, 621, 627, 767, 893, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.