Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

56570639 .. 56571094

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0475500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGTTGCCAAGAAACATGGACTGTCCCTCTCCACTCTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTTGGCAAACAAGAATATGTGCTCAAAGTGCTACATTGATTATTTGAAAGAAGTGCTTCTTGCTAAGCATACTGCAGAGCCGGCCGTGGTGCCTTCAGTGGAGAAAAACCTAGACGTCGCTGTTTCTGCTAGCGAGTCGTCGTCAACCACAACAACTAGCGATCAGCCATGTGGTGTGACAAAGAATTGGTGCCAGAGCTATAGCTGCAAGAAGAAAGTTGGTCCGGTGCAAGTGGCGTTAAAATGCCGCTGTGGTGGAGTGTTTTGTCCAGAGCATAGGCTAGCTGAAAAGCACACATGTAGTGTGGATTACAAGAGGCCTGGAGGAGAGCTCTTGGCCAAGCAAAACCCAGTTTGCAAGGGTGACAAGTTAAAGCAGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

151

Amino Acids

16.45

Weight (kDa)

8.88

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 34	7.1e-10	A20-like zinc finger
zf-AN1	PF01428	87 - 128	1.1e-09	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccB1I	GGYRCC	2 cut(s)	157, 258
AciI	CCGC	2 cut(s)	54, 316
AcoI	YGGCCR	2 cut(s)	150, 405
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	4 cut(s)	267, 273, 353, 400
AluI	AGCT	4 cut(s)	267, 273, 353, 400
Alw21I	GWGCWC	2 cut(s)	92, 402
AoxI	GGCC	3 cut(s)	150, 386, 405
ApeKI	GCWGC	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	123
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	443
AsuNHI	GCTAGC	2 cut(s)	197, 349
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	2 cut(s)	157, 258
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	2 cut(s)	92, 402
BbvI	GCAGC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	390
BfaI	CTAG	4 cut(s)	179, 198, 225, 350
BfmI	CTRYAG	2 cut(s)	141, 268
BisI	GCNGC	2 cut(s)	274, 316
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	2 cut(s)	275, 317
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	159, 260
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	413
BmtI	GCTAGC	2 cut(s)	201, 353
BmuI	ACTGGG	1 cut(s)	413
BplI	GAGNNNNNCTC	2 cut(s)	384, 416
BpmI	CTGGAG	1 cut(s)	411
Bpu1102I	GCTNAGC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	419
BseRI	GAGGAG	1 cut(s)	408
BseX3I	CGGCCG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	152, 388, 407
BshNI	GGYRCC	2 cut(s)	157, 258
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	92, 402
BsiSI	CCGG	2 cut(s)	149, 293
BslFI	GGGAC	2 cut(s)	12, 79
BsmFI	GGGAC	2 cut(s)	12, 79
BsnI	GGCC	3 cut(s)	152, 388, 407
Bsp1286I	GDGCHC	2 cut(s)	92, 402
Bsp143I	GATC	1 cut(s)	229
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	2 cut(s)	54, 316
BspANI	GGCC	3 cut(s)	152, 388, 407
BspLI	GGNNCC	2 cut(s)	159, 260
BspMAI	CTGCAG	1 cut(s)	145
BspOI	GCTAGC	2 cut(s)	201, 353
BspT107I	GGYRCC	2 cut(s)	157, 258
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	419
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	1 cut(s)	229
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	150, 199, 351
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	369
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	141, 268
BstV1I	GCAGC	1 cut(s)	260
BstZI	CGGCCG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	152, 388, 407
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	150, 199, 351
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	3 cut(s)	19, 237, 366
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	2 cut(s)	150, 405
EagI	CGGCCG	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	400
EclXI	CGGCCG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	290
Eco52I	CGGCCG	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	402
FaeI	CATG	3 cut(s)	22, 240, 369
FaiI	YATR	7 cut(s)	20, 86, 138, 238, 270, 345, 367
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 111, 143
FaqI	GGGAC	2 cut(s)	12, 79
FatI	CATG	3 cut(s)	18, 236, 365
Fnu4HI	GCNGC	2 cut(s)	274, 316
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	2 cut(s)	274, 316
FspBI	CTAG	4 cut(s)	179, 198, 225, 350
GluI	GCNGC	2 cut(s)	274, 316
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	152, 388, 407
HapII	CCGG	2 cut(s)	149, 293
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	22, 240, 369
HincII	GTYRAC	1 cut(s)	213
HindII	GTYRAC	1 cut(s)	213
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	149, 293
HphI	GGTGA	1 cut(s)	443
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	213
Hpy99I	CGWCG	2 cut(s)	188, 211
HpyAV	CCTTC	1 cut(s)	171
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	5 cut(s)	44, 143, 276, 298, 426
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	22, 240, 369
KroI	GCCGGC	1 cut(s)	148
KroNI	GCCGGC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	229
LpnPI	CCDG	7 cut(s)	162, 275, 306, 351, 375, 402, 432
Lsp1109I	GCAGC	1 cut(s)	260
MaeI	CTAG	4 cut(s)	179, 198, 225, 350
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	2 cut(s)	244, 431
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	92, 402
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	407
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	5 cut(s)	40, 41, 378, 386, 441
Mox20I	TGGCCA	1 cut(s)	407
MroNI	GCCGGC	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	308, 440
Msp20I	TGGCCA	1 cut(s)	407
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	2 cut(s)	149, 293
MspR9I	CCNGG	1 cut(s)	390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	96, 149, 194, 273
NaeI	GCCGGC	1 cut(s)	150
NdeII	GATC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	148
NheI	GCTAGC	2 cut(s)	197, 349
NlaIII	CATG	3 cut(s)	22, 240, 369
NlaIV	GGNNCC	2 cut(s)	159, 260
NmuCI	GTSAC	2 cut(s)	244, 431
NspI	RCATGY	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	388
PciI	ACATGT	1 cut(s)	365
PdiI	GCCGGC	1 cut(s)	150
PdmI	GAANNNNTTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	275, 317
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PscI	ACATGT	1 cut(s)	365
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	159, 260
PspPI	GGNCC	1 cut(s)	290
PstI	CTGCAG	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	2 cut(s)	308, 440
SatI	GCNGC	2 cut(s)	274, 316
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	390
SduI	GDGCHC	2 cut(s)	92, 402
SetI	ASST	7 cut(s)	52, 180, 186, 269, 275, 355, 402
SfcI	CTRYAG	2 cut(s)	141, 268
SinI	GGWCC	1 cut(s)	290
Sse9I	AATT	1 cut(s)	253
SseBI	AGGCCT	1 cut(s)	388
SsiI	CCGC	2 cut(s)	54, 316
SspMI	CTAG	4 cut(s)	179, 198, 225, 350
SstI	GAGCTC	1 cut(s)	402
StuI	AGGCCT	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	186
TasI	AATT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	318
Tru1I	TTAA	2 cut(s)	308, 440
Tru9I	TTAA	2 cut(s)	308, 440
TscAI	CASTG	1 cut(s)	171
TseFI	GTSAC	2 cut(s)	244, 431
TseI	GCWGC	1 cut(s)	273
Tsp45I	GTSAC	2 cut(s)	244, 431
TspRI	CASTG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	290
XceI	RCATGY	1 cut(s)	369
XmnI	GAANNNNTTC	1 cut(s)	123
XspI	CTAG	4 cut(s)	179, 198, 225, 350
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.