Rroxscaffold_2G00153530

Calmodulin-binding receptor-like cytoplasmic kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
90338470 .. 90341960
3491 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00153530.1

Sequence Viewer

Length: 1551 bp
ATGCTTTGTTATCGTTTCATTGAGAAAATGGAAATTGTGCACATTATTTCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTTGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCAACTTCTAATGGTAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCATCGGAAGCAGCCATTGTGGATCAGTCATTTCACTAGGAAGAAAACTTATGCAAAAGGAGTTGAAGGATGAATCCACTTTCCATCATGGAGAAAACAAGAACGCTTCTGAATCTATGTCCACGACCAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCACAATGTTCTTGCTAAGGACGCAAAATCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCAGCCAGTCCACATCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTGAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCACAACTTCTCAAAATCACAGCTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACTGAATTCAGTACAGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTGGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCAAATGGTAATCTCAGAGAACATCTGGATGTTCAACATGGGAAAACCCTGGAGTTTAATCAGCGACTTGAAATAGCCATTGATGTTGCTCATGCCCTAACTTATCTTCATCTGTACTCAGAAAAGCAAATTATCCATCGAGACGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATGCAGATCGAACACACATTTCTACTAAAGTGAAAGGAACTGTTGGCTACCTGGACCCGGAGTATATGAAAACATATCAACTCACCGCCAAAAGTGATGTCTACTCATTTGGGATATTACTTATAGAAATTGTGACGGGTCGTCGTCCAGTGGAGATGAAGAGACCAGTTGAAGAGCGTGTCACTCTCAGATGGGCATTCAAAAAGTTGAACGAAGGAAGAACGTGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTACAGAAAATCTTTGAATTGGCTATCCAGTGTGCAGCCCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACGATAAGGGCAGACTACCTTAAAAGTCTCAAAAGAGGGTAG

Protein Analysis

516

Amino Acids

57.77

Weight (kDa)

8.84

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 231 - 442 3.1e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 233 - 502 8.7e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 634, 732, 1248
AciI CCGC 2 cut(s) 561, 1233
AclWI GGATC 2 cut(s) 304, 1379
AcoI YGGCCR 3 cut(s) 754, 837, 1475
AcsI RAATTY 3 cut(s) 202, 799, 812
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 6 cut(s) 93, 594, 648, 820, 1037, 1419
AfiI CCNNNNNNNGG 1 cut(s) 1204
AhdI GACNNNNNGTC 2 cut(s) 1069, 1287
AjiI CACGTC 1 cut(s) 1066
AjnI CCWGG 4 cut(s) 671, 969, 1130, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 3 cut(s) 1056, 1303, 1541
Alw44I GTGCAC 1 cut(s) 38
AlwI GGATC 2 cut(s) 304, 1379
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 3 cut(s) 754, 837, 1475
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 5 cut(s) 285, 419, 488, 1454, 1501
ApoI RAATTY 3 cut(s) 202, 799, 812
ArsI GACNNNNNNTTYG 2 cut(s) 1230, 1262
AspS9I GGNCC 3 cut(s) 148, 1139, 1201
AsuC2I CCSGG 1 cut(s) 1205
AsuHPI GGTGA 2 cut(s) 722, 1222
AsuNHI GCTAGC 1 cut(s) 745
AvaII GGWCC 3 cut(s) 148, 1139, 1201
BaeGI GKGCMC 1 cut(s) 42
BalI TGGCCA 2 cut(s) 756, 839
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 5 cut(s) 297, 431, 475, 1466, 1513
BccI CCATC 5 cut(s) 366, 746, 1065, 1138, 1332
BciT130I CCWGG 4 cut(s) 673, 971, 1132, 1199
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 1205
BcoDI GTCTC 3 cut(s) 1056, 1303, 1541
BfaI CTAG 4 cut(s) 311, 600, 606, 746
BfmI CTRYAG 1 cut(s) 1421
BisI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
BlsI GCNGC 6 cut(s) 287, 421, 490, 562, 1456, 1503
Bme1390I CCNGG 5 cut(s) 673, 971, 1132, 1199, 1205
Bme18I GGWCC 3 cut(s) 148, 1139, 1201
BmeRI GACNNNNNGTC 2 cut(s) 1069, 1287
BmgBI CACGTC 1 cut(s) 1066
BmgT120I GGNCC 3 cut(s) 148, 1139, 1201
BmiI GGNNCC 1 cut(s) 1203
BmrFI CCNGG 5 cut(s) 673, 971, 1132, 1199, 1205
BmrI ACTGGG 1 cut(s) 881
BmsI GCATC 2 cut(s) 285, 1138
BmtI GCTAGC 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 881
BoxI GACNNNNGTC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 992
Bpu10I CCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 1205
BsaBI GATNNNNATC 1 cut(s) 1152
BsaI GGTCTC 1 cut(s) 1303
BsaJI CCNNGG 2 cut(s) 672, 969
BsaXI ACNNNNNCTCC 2 cut(s) 1490, 1520
Bsc4I CCNNNNNNNGG 1 cut(s) 1204
Bse1I ACTGG 6 cut(s) 151, 579, 876, 1295, 1313, 1447
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 4 cut(s) 673, 971, 1132, 1199
BseDI CCNNGG 2 cut(s) 672, 969
BseGI GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 1 cut(s) 1204
BseMII CTCAG 4 cut(s) 620, 949, 1053, 1348
BseNI ACTGG 6 cut(s) 151, 579, 876, 1295, 1313, 1447
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 5 cut(s) 297, 431, 475, 1466, 1513
BsgI GTGCAG 1 cut(s) 1473
BshFI GGCC 3 cut(s) 756, 839, 1477
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 1205
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 1 cut(s) 1204
BsmAI GTCTC 3 cut(s) 1056, 1303, 1541
BsmBI CGTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 444
BsmI GAATGC 1 cut(s) 1343
BsnI GGCC 3 cut(s) 756, 839, 1477
Bso31I GGTCTC 1 cut(s) 1303
Bsp1286I GDGCHC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 296, 847, 1153, 1384, 1471
BspACI CCGC 2 cut(s) 561, 1233
BspANI GGCC 3 cut(s) 756, 839, 1477
BspCNI CTCAG 4 cut(s) 621, 948, 1052, 1347
BspLI GGNNCC 1 cut(s) 1203
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 2 cut(s) 304, 1379
BspQI GCTCTTC 2 cut(s) 240, 1314
BspTNI GGTCTC 1 cut(s) 1303
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 6 cut(s) 151, 579, 876, 1295, 1313, 1447
BssECI CCNNGG 2 cut(s) 672, 969
BssMI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
Bst2UI CCWGG 4 cut(s) 673, 971, 1132, 1199
Bst4CI ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
Bst6I CTCTTC 3 cut(s) 240, 1301, 1314
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 4 cut(s) 102, 747, 1100, 1104
BstDEI CTNAG 5 cut(s) 507, 629, 935, 1039, 1334
BstF5I GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BstKTI GATC 5 cut(s) 299, 850, 1156, 1387, 1474
BstMAI GTCTC 3 cut(s) 1056, 1303, 1541
BstMBI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
BstMWI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
BstNI CCWGG 4 cut(s) 673, 971, 1132, 1199
BstNSI RCATGY 1 cut(s) 1102
BstPAI GACNNNNGTC 1 cut(s) 640
BstSCI CCNGG 5 cut(s) 671, 969, 1130, 1197, 1203
BstSFI CTRYAG 1 cut(s) 1421
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 297, 431, 475, 1466, 1513
BsuRI GGCC 3 cut(s) 756, 839, 1477
BtrI CACGTC 1 cut(s) 1066
BtsCI GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BtsIMutI CAGTG 4 cut(s) 213, 1302, 1454, 1497
Cac8I GCNNGC 4 cut(s) 102, 747, 1100, 1104
CaiI CAGNNNCTG 1 cut(s) 488
Cfr13I GGNCC 3 cut(s) 148, 1139, 1201
CseI GACGC 1 cut(s) 521
Csp6I GTAC 6 cut(s) 92, 593, 647, 819, 1036, 1418
CviAII CATG 6 cut(s) 362, 557, 959, 1013, 1099, 1483
CviQI GTAC 6 cut(s) 92, 593, 647, 819, 1036, 1418
DdeI CTNAG 5 cut(s) 507, 629, 935, 1039, 1334
DpnI GATC 5 cut(s) 298, 849, 1155, 1386, 1473
DpnII GATC 5 cut(s) 296, 847, 1153, 1384, 1471
DraIII CACNNNGTG 1 cut(s) 590
DriI GACNNNNNGTC 2 cut(s) 1069, 1287
EaeI YGGCCR 3 cut(s) 754, 837, 1475
Eam1104I CTCTTC 3 cut(s) 240, 1301, 1314
Eam1105I GACNNNNNGTC 2 cut(s) 1069, 1287
EarI CTCTTC 3 cut(s) 240, 1301, 1314
Eco31I GGTCTC 1 cut(s) 1303
Eco47I GGWCC 3 cut(s) 148, 1139, 1201
EcoRI GAATTC 2 cut(s) 202, 812
EcoRII CCWGG 4 cut(s) 671, 969, 1130, 1197
Esp3I CGTCTC 1 cut(s) 1056
FaeI CATG 6 cut(s) 365, 560, 962, 1016, 1102, 1486
FalI AAGNNNNNCTT 4 cut(s) 776, 808, 816, 848
FaqI GGGAC 1 cut(s) 444
FatI CATG 6 cut(s) 361, 556, 958, 1012, 1098, 1482
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 3 cut(s) 634, 732, 1248
Fnu4HI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
FokI GGATG 5 cut(s) 356, 896, 962, 1060, 1160
Fsp4HI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
FspBI CTAG 4 cut(s) 311, 600, 606, 746
GluI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
GsuI CTGGAG 1 cut(s) 992
HaeIII GGCC 3 cut(s) 756, 839, 1477
HapII CCGG 1 cut(s) 1205
HgaI GACGC 1 cut(s) 521
Hin1II CATG 6 cut(s) 365, 560, 962, 1016, 1102, 1486
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 5 cut(s) 347, 386, 553, 661, 856
HpaII CCGG 1 cut(s) 1205
HphI GGTGA 2 cut(s) 722, 1222
Hpy166II GTNNAC 8 cut(s) 40, 396, 584, 593, 635, 733, 1249, 1509
Hpy188I TCNGA 9 cut(s) 281, 385, 666, 855, 938, 1042, 1089, 1143, 1337
Hpy188III TCNNGA 2 cut(s) 947, 1061
Hpy8I GTNNAC 8 cut(s) 40, 396, 584, 593, 635, 733, 1249, 1509
Hpy99I CGWCG 1 cut(s) 1293
HpyAV CCTTC 5 cut(s) 334, 707, 778, 881, 1355
HpyCH4III ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
HpyCH4IV ACGT 4 cut(s) 775, 1065, 1370, 1416
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
HpyF3I CTNAG 5 cut(s) 507, 629, 935, 1039, 1334
HpySE526I ACGT 4 cut(s) 775, 1065, 1370, 1416
Hsp92II CATG 6 cut(s) 365, 560, 962, 1016, 1102, 1486
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 296, 847, 1153, 1384, 1471
LguI GCTCTTC 2 cut(s) 240, 1314
LmnI GCTCC 2 cut(s) 428, 1498
Lsp1109I GCAGC 5 cut(s) 297, 431, 475, 1466, 1513
LweI GCATC 2 cut(s) 285, 1138
MaeI CTAG 4 cut(s) 311, 600, 606, 746
MaeII ACGT 4 cut(s) 775, 1065, 1370, 1416
MaeIII GTNAC 2 cut(s) 1279, 1327
MalI GATC 5 cut(s) 298, 849, 1155, 1386, 1473
MboI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
MboII GAAGA 8 cut(s) 227, 327, 531, 1019, 1076, 1318, 1331, 1377
MfeI CAATTG 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 42
MlsI TGGCCA 2 cut(s) 756, 839
MluNI TGGCCA 2 cut(s) 756, 839
MmeI TCCRAC 1 cut(s) 1101
MnlI CCTC 4 cut(s) 124, 262, 1390, 1538
Mox20I TGGCCA 2 cut(s) 756, 839
MscI TGGCCA 2 cut(s) 756, 839
MseI TTAA 5 cut(s) 53, 74, 471, 978, 1530
MslI CAYNNNNRTG 1 cut(s) 948
Msp20I TGGCCA 2 cut(s) 756, 839
MspA1I CMGCKG 2 cut(s) 563, 1504
MspI CCGG 1 cut(s) 1205
MspR9I CCNGG 5 cut(s) 673, 971, 1132, 1199, 1205
MunI CAATTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 1343
MvaI CCWGG 4 cut(s) 673, 971, 1132, 1199
MwoI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
NciI CCSGG 1 cut(s) 1205
NdeII GATC 5 cut(s) 296, 847, 1153, 1384, 1471
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 6 cut(s) 365, 560, 962, 1016, 1102, 1486
NlaIV GGNNCC 1 cut(s) 1203
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 2 cut(s) 1279, 1327
NspI RCATGY 1 cut(s) 1102
PaeI GCATGC 1 cut(s) 1102
PciSI GCTCTTC 2 cut(s) 240, 1314
PctI GAATGC 1 cut(s) 1343
PfeI GAWTC 5 cut(s) 347, 386, 553, 661, 856
PkrI GCNGC 6 cut(s) 287, 421, 490, 562, 1456, 1503
PshAI GACNNNNGTC 1 cut(s) 640
Psp6I CCWGG 4 cut(s) 671, 969, 1130, 1197
PspGI CCWGG 4 cut(s) 671, 969, 1130, 1197
PspN4I GGNNCC 1 cut(s) 1203
PspPI GGNCC 3 cut(s) 148, 1139, 1201
PstNI CAGNNNCTG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 1504
RsaI GTAC 6 cut(s) 93, 594, 648, 820, 1037, 1419
RsaNI GTAC 6 cut(s) 92, 593, 647, 819, 1036, 1418
RseI CAYNNNNRTG 1 cut(s) 948
SapI GCTCTTC 2 cut(s) 240, 1314
SaqAI TTAA 5 cut(s) 53, 74, 471, 978, 1530
SatI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
Sau3AI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
Sau96I GGNCC 3 cut(s) 148, 1139, 1201
ScrFI CCNGG 5 cut(s) 673, 971, 1132, 1199, 1205
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 2 cut(s) 285, 1138
SfcI CTRYAG 1 cut(s) 1421
SinI GGWCC 3 cut(s) 148, 1139, 1201
SmiMI CAYNNNNRTG 1 cut(s) 948
SphI GCATGC 1 cut(s) 1102
SsiI CCGC 2 cut(s) 561, 1233
SspMI CTAG 4 cut(s) 311, 600, 606, 746
StyD4I CCNGG 5 cut(s) 671, 969, 1130, 1197, 1203
TaaI ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
TaiI ACGT 4 cut(s) 778, 1068, 1373, 1419
TaqI TCGA 3 cut(s) 1060, 1156, 1465
TatI WGTACW 3 cut(s) 646, 818, 1035
TauI GCSGC 1 cut(s) 563
TfiI GAWTC 5 cut(s) 347, 386, 553, 661, 856
Tru1I TTAA 5 cut(s) 53, 74, 471, 978, 1530
Tru9I TTAA 5 cut(s) 53, 74, 471, 978, 1530
TscAI CASTG 4 cut(s) 213, 1302, 1454, 1497
TseFI GTSAC 2 cut(s) 1279, 1327
TseI GCWGC 5 cut(s) 285, 419, 488, 1454, 1501
Tsp45I GTSAC 2 cut(s) 1279, 1327
TspDTI ATGAA 8 cut(s) 7, 360, 900, 909, 1019, 1229, 1319, 1499
TspRI CASTG 4 cut(s) 213, 1302, 1454, 1497
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 3 cut(s) 148, 1139, 1201
XapI RAATTY 3 cut(s) 202, 799, 812
XceI RCATGY 1 cut(s) 1102
XmiI GTMKAC 3 cut(s) 634, 732, 1248
XspI CTAG 4 cut(s) 311, 600, 606, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.