Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

2186073 .. 2188654

Gene Structure 2582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGCTTTGTTATCGTTTCGTTGAGAAAATGGAAATTGTGCATATTATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTTGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGTAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTCAGAAGCAGCCATTGTGGATCAGTCATTTCACTAGGAAGAAAACTTATGCAAAAGGAGTTTAAGGATGAATCCACTTTCCATCATGGAGAAAACAAGAACGCTTCTGAATCTATGTCCACGACCAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCAAAATGTTCTTGCTAAGGACGCAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACTTCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTACCGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCGAATGGTAATCTCAGAGAACATCTGGATGGTAAGCCACTGGCATTCAAAAAGTTGAACGAAGGAAGAACGTGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTACAGAAAATCTTTGATTTGGCTATCCAGTGTGCAGCTCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACAATAAGGGCAGACTACCTGAAAAGTCTCAAAAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.31

Weight (kDa)

8.84

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	231 - 318	1.7e-15	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	233 - 319	3.3e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	634, 732
AciI	CCGC	2 cut(s)	561, 682
AclWI	GGATC	2 cut(s)	304, 1001
AcoI	YGGCCR	4 cut(s)	576, 754, 837, 1097
AcsI	RAATTY	4 cut(s)	202, 517, 799, 812
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	5 cut(s)	93, 594, 648, 820, 1041
AgsI	TTSAA	8 cut(s)	239, 522, 548, 615, 661, 830, 970, 979
AjnI	CCWGG	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
Alw26I	GTCTC	1 cut(s)	1163
AlwI	GGATC	2 cut(s)	304, 1001
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	576, 754, 837, 1097
ApeKI	GCWGC	5 cut(s)	285, 419, 488, 1076, 1123
ApoI	RAATTY	4 cut(s)	202, 517, 799, 812
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	2 cut(s)	756, 839
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	297, 431, 475, 1088, 1135
BccI	CCATC	3 cut(s)	366, 746, 944
BciT130I	CCWGG	1 cut(s)	673
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	1163
BfaI	CTAG	5 cut(s)	311, 600, 606, 746, 872
BfmI	CTRYAG	1 cut(s)	1043
BisI	GCNGC	6 cut(s)	286, 420, 489, 561, 1077, 1124
BlsI	GCNGC	6 cut(s)	287, 421, 490, 562, 1078, 1125
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	673
BmtI	GCTAGC	1 cut(s)	749
BoxI	GACNNNNGTC	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	672
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	4 cut(s)	151, 579, 966, 1069
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	1 cut(s)	672
BseGI	GGATG	3 cut(s)	349, 889, 955
BseMII	CTCAG	3 cut(s)	292, 643, 949
BseNI	ACTGG	4 cut(s)	151, 579, 966, 1069
BseXI	GCAGC	5 cut(s)	297, 431, 475, 1088, 1135
BsgI	GTGCAG	1 cut(s)	1095
BshFI	GGCC	4 cut(s)	578, 756, 839, 1099
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	1163
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	965
BsnI	GGCC	4 cut(s)	578, 756, 839, 1099
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	296, 847, 1006, 1093
BspACI	CCGC	2 cut(s)	561, 682
BspANI	GGCC	4 cut(s)	578, 756, 839, 1099
BspCNI	CTCAG	3 cut(s)	291, 642, 948
BspLI	GGNNCC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	304, 1001
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	4 cut(s)	151, 579, 966, 1069
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	4 cut(s)	296, 847, 1006, 1093
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	4 cut(s)	132, 409, 730, 1114
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	102, 747
BstDEI	CTNAG	4 cut(s)	278, 507, 629, 935
BstF5I	GGATG	3 cut(s)	349, 889, 955
BstKTI	GATC	4 cut(s)	299, 850, 1009, 1096
BstMAI	GTCTC	1 cut(s)	1163
BstMBI	GATC	4 cut(s)	296, 847, 1006, 1093
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 282, 419, 428, 512, 746, 1031
BstNI	CCWGG	1 cut(s)	673
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	1043
BstV1I	GCAGC	5 cut(s)	297, 431, 475, 1088, 1135
BsuRI	GGCC	4 cut(s)	578, 756, 839, 1099
BtsCI	GGATG	3 cut(s)	349, 889, 955
BtsIMutI	CAGTG	4 cut(s)	213, 959, 1076, 1119
Cac8I	GCNNGC	2 cut(s)	102, 747
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	5 cut(s)	92, 593, 647, 819, 1040
CviAII	CATG	3 cut(s)	362, 557, 1105
CviQI	GTAC	5 cut(s)	92, 593, 647, 819, 1040
DdeI	CTNAG	4 cut(s)	278, 507, 629, 935
DpnI	GATC	4 cut(s)	298, 849, 1008, 1095
DpnII	GATC	4 cut(s)	296, 847, 1006, 1093
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	4 cut(s)	576, 754, 837, 1097
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	148
EcoRI	GAATTC	2 cut(s)	202, 812
EcoRII	CCWGG	1 cut(s)	671
FaeI	CATG	3 cut(s)	365, 560, 1108
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 816, 848
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	3 cut(s)	361, 556, 1104
FauI	CCCGC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	2 cut(s)	634, 732
Fnu4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 1077, 1124
FokI	GGATG	3 cut(s)	356, 896, 962
Fsp4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 1077, 1124
FspBI	CTAG	5 cut(s)	311, 600, 606, 746, 872
GluI	GCNGC	6 cut(s)	286, 420, 489, 561, 1077, 1124
HaeIII	GGCC	4 cut(s)	578, 756, 839, 1099
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	3 cut(s)	365, 560, 1108
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	5 cut(s)	347, 386, 553, 661, 856
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	6 cut(s)	396, 584, 593, 635, 733, 1131
Hpy188I	TCNGA	5 cut(s)	281, 385, 666, 855, 938
Hpy188III	TCNNGA	1 cut(s)	947
Hpy8I	GTNNAC	6 cut(s)	396, 584, 593, 635, 733, 1131
HpyAV	CCTTC	4 cut(s)	707, 778, 881, 977
HpyCH4III	ACNGT	4 cut(s)	132, 409, 730, 1114
HpyCH4IV	ACGT	3 cut(s)	775, 992, 1038
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 282, 419, 428, 512, 746, 1031
HpyF3I	CTNAG	4 cut(s)	278, 507, 629, 935
HpySE526I	ACGT	3 cut(s)	775, 992, 1038
Hsp92II	CATG	3 cut(s)	365, 560, 1108
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	296, 847, 1006, 1093
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	3 cut(s)	428, 1084, 1120
Lsp1109I	GCAGC	5 cut(s)	297, 431, 475, 1088, 1135
MaeI	CTAG	5 cut(s)	311, 600, 606, 746, 872
MaeII	ACGT	3 cut(s)	775, 992, 1038
MalI	GATC	4 cut(s)	298, 849, 1008, 1095
MboI	GATC	4 cut(s)	296, 847, 1006, 1093
MboII	GAAGA	4 cut(s)	227, 327, 531, 999
MfeI	CAATTG	1 cut(s)	95
MlsI	TGGCCA	2 cut(s)	756, 839
MluNI	TGGCCA	2 cut(s)	756, 839
MnlI	CCTC	5 cut(s)	124, 262, 287, 1012, 1160
Mox20I	TGGCCA	2 cut(s)	756, 839
MscI	TGGCCA	2 cut(s)	756, 839
MseI	TTAA	4 cut(s)	53, 74, 339, 471
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	2 cut(s)	756, 839
MspA1I	CMGCKG	2 cut(s)	563, 1126
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	965
MvaI	CCWGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	7 cut(s)	110, 282, 419, 428, 512, 746, 1031
NdeII	GATC	4 cut(s)	296, 847, 1006, 1093
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	3 cut(s)	365, 560, 1108
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	965
PfeI	GAWTC	5 cut(s)	347, 386, 553, 661, 856
PkrI	GCNGC	6 cut(s)	287, 421, 490, 562, 1078, 1125
PshAI	GACNNNNGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	1126
RsaI	GTAC	5 cut(s)	93, 594, 648, 820, 1041
RsaNI	GTAC	5 cut(s)	92, 593, 647, 819, 1040
RseI	CAYNNNNRTG	1 cut(s)	948
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	53, 74, 339, 471
SatI	GCNGC	6 cut(s)	286, 420, 489, 561, 1077, 1124
Sau3AI	GATC	4 cut(s)	296, 847, 1006, 1093
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	1043
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	948
SsiI	CCGC	2 cut(s)	561, 682
SspMI	CTAG	5 cut(s)	311, 600, 606, 746, 872
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	4 cut(s)	132, 409, 730, 1114
TaiI	ACGT	3 cut(s)	778, 995, 1041
TaqI	TCGA	1 cut(s)	1087
TatI	WGTACW	1 cut(s)	646
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	5 cut(s)	347, 386, 553, 661, 856
Tru1I	TTAA	4 cut(s)	53, 74, 339, 471
Tru9I	TTAA	4 cut(s)	53, 74, 339, 471
TscAI	CASTG	4 cut(s)	213, 966, 1076, 1119
TseI	GCWGC	5 cut(s)	285, 419, 488, 1076, 1123
TspDTI	ATGAA	4 cut(s)	360, 900, 909, 1121
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	213, 966, 1076, 1119
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	4 cut(s)	202, 517, 799, 812
XmiI	GTMKAC	2 cut(s)	634, 732
XspI	CTAG	5 cut(s)	311, 600, 606, 746, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.