Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006064.1

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

48156 .. 50737

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006064.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

atgctttgttatcgttttgttgagaaaatggaaattgtgcatataattccgttaagaatggcaataactatgttaagtttgttgatgttggtacaattgccagcaatccctgcctctgcgtttgtcatacagtcaaaggtttgtaaggaccagtttgcctatgcgacttctaatgggaaggacttgttttacataaatgggaattcagtggagaaagctttattctgtaatgctcttcaaacatactatgcaaatggttgcattttggaggggtgccttggaagcagccattgtggatcagtcatttcactaggaagaaaacttatgcaaaaggagtttaaggatgaatccactttccatcatggagaaaacaagaacgcttctaaatctatgtccacaaccaaaacagttgcaatagcagcaagtggagcattattggtgtgttgtgttttcctctgtccctgcttttttaagaaaaggacagaagctgctcacaatgttcttgctaaggacgcaaattcaatggataattcagcttcttcttttgaagtgaatcatgccgctgaaaagataccggccagtccacttcgtgtaccacctagtcctagatattcaaactctccaaaactcagtagacttgggtctgtacatctcaatttgaatcagattgccagggcaacccgcaacttctcaaaatcacaacttataggtgaaggtggttttggaactgtctacaaagctcggctagctgatggccaagtggtttctataaaacgtgcaaagaaggaactctttgagaatttgcaaaccgaattcagtaccgaagttgaacttctggccaaaattgatcatcggaatcttgtaaagctactaggttatgtggatgaaggaaatgaacgacttatcattacagagtatgtgccgaatggtaatctcagagaacatctggatggtcaacatgggaaaaccctggagtttaatcagcgacttgaaatagccattgatgttgctcatgccctaacttatcttcatctgtactcagaaaagcaaattatccatcgagacgtgaagtcatccaacattcttctgacagaaagcatgcgagccaaagttgctgattttggatttgccaggcttggtccgatggatgcagatcgaacacacatttctactaaagtgaaaggaaccgttggctacctagacccagagtacatgaaaacatatcaactcaccgccaaaagtgatgtctactcatttgggatattacttatagaaattgtgacgggtcgtcgtccagtggagatgaagagaccagttgaagagcgtgtcactctcagatgggcattcaaaaagttgaacgaaggaagagcatgggaattgattgatcctgcaatagaggaagctgtaaatgcagacgtactacagaaaatctttgatttggctatccagtgtgcagctccaattcgagctgatcggccagacatgaaaacagtgggggagcagctgtggacaataagggcagactacctgaaaagtctcaaaagagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

516

Amino Acids

57.7

Weight (kDa)

8.97

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	3 cut(s)	634, 732, 1248
AciI	CCGC	3 cut(s)	561, 682, 1233
AclWI	GGATC	2 cut(s)	304, 1379
AcoI	YGGCCR	4 cut(s)	576, 754, 837, 1475
AcsI	RAATTY	4 cut(s)	202, 517, 799, 812
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	7 cut(s)	93, 594, 648, 820, 1037, 1211, 1419
AhdI	GACNNNNNGTC	2 cut(s)	1069, 1287
AjiI	CACGTC	1 cut(s)	1066
AjnI	CCWGG	3 cut(s)	671, 969, 1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
Alw26I	GTCTC	3 cut(s)	1056, 1303, 1541
AlwI	GGATC	2 cut(s)	304, 1379
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	4 cut(s)	576, 754, 837, 1475
ApeKI	GCWGC	5 cut(s)	285, 419, 488, 1454, 1501
ApoI	RAATTY	4 cut(s)	202, 517, 799, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	1230, 1262
AspS9I	GGNCC	2 cut(s)	148, 1139
AsuHPI	GGTGA	2 cut(s)	722, 1222
AsuNHI	GCTAGC	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	148, 1139
BalI	TGGCCA	2 cut(s)	756, 839
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	297, 431, 475, 1466, 1513
BccI	CCATC	6 cut(s)	366, 746, 944, 1065, 1138, 1332
BciT130I	CCWGG	3 cut(s)	673, 971, 1132
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	1056, 1303, 1541
BfaI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
BfmI	CTRYAG	1 cut(s)	1421
BisI	GCNGC	6 cut(s)	286, 420, 489, 561, 1455, 1502
BlsI	GCNGC	6 cut(s)	287, 421, 490, 562, 1456, 1503
Bme1390I	CCNGG	3 cut(s)	673, 971, 1132
Bme18I	GGWCC	2 cut(s)	148, 1139
BmeRI	GACNNNNNGTC	2 cut(s)	1069, 1287
BmgBI	CACGTC	1 cut(s)	1066
BmgT120I	GGNCC	2 cut(s)	148, 1139
BmiI	GGNNCC	2 cut(s)	275, 1186
BmrFI	CCNGG	3 cut(s)	673, 971, 1132
BmsI	GCATC	1 cut(s)	1138
BmtI	GCTAGC	1 cut(s)	749
BoxI	GACNNNNGTC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	992
Bpu10I	CCTNAGC	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	3 cut(s)	277, 672, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	1490, 1520
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	5 cut(s)	151, 579, 1295, 1313, 1447
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	3 cut(s)	673, 971, 1132
BseDI	CCNNGG	3 cut(s)	277, 672, 969
BseGI	GGATG	5 cut(s)	349, 889, 955, 1073, 1153
BseJI	GATNNNNATC	1 cut(s)	1152
BseMII	CTCAG	4 cut(s)	643, 949, 1053, 1348
BseNI	ACTGG	5 cut(s)	151, 579, 1295, 1313, 1447
BseXI	GCAGC	5 cut(s)	297, 431, 475, 1466, 1513
BsgI	GTGCAG	1 cut(s)	1473
BshFI	GGCC	4 cut(s)	578, 756, 839, 1477
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	3 cut(s)	1056, 1303, 1541
BsmBI	CGTCTC	1 cut(s)	1056
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	1343
BsnI	GGCC	4 cut(s)	578, 756, 839, 1477
Bso31I	GGTCTC	1 cut(s)	1303
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
BspACI	CCGC	3 cut(s)	561, 682, 1233
BspANI	GGCC	4 cut(s)	578, 756, 839, 1477
BspCNI	CTCAG	4 cut(s)	642, 948, 1052, 1347
BspLI	GGNNCC	2 cut(s)	275, 1186
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	304, 1379
BspQI	GCTCTTC	3 cut(s)	240, 1314, 1360
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	1303
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	5 cut(s)	151, 579, 1295, 1313, 1447
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	277, 672, 969
BssMI	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	673, 971, 1132
Bst4CI	ACNGT	5 cut(s)	132, 409, 730, 1189, 1492
Bst6I	CTCTTC	4 cut(s)	240, 1301, 1314, 1360
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	646
BstC8I	GCNNGC	4 cut(s)	102, 747, 1100, 1104
BstDEI	CTNAG	5 cut(s)	507, 629, 935, 1039, 1334
BstF5I	GGATG	5 cut(s)	349, 889, 955, 1073, 1153
BstKTI	GATC	5 cut(s)	299, 850, 1156, 1387, 1474
BstMAI	GTCTC	3 cut(s)	1056, 1303, 1541
BstMBI	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 1112, 1409
BstNI	CCWGG	3 cut(s)	673, 971, 1132
BstNSI	RCATGY	1 cut(s)	1102
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	671, 969, 1130
BstSFI	CTRYAG	1 cut(s)	1421
BstV1I	GCAGC	5 cut(s)	297, 431, 475, 1466, 1513
BsuRI	GGCC	4 cut(s)	578, 756, 839, 1477
BtrI	CACGTC	1 cut(s)	1066
BtsCI	GGATG	5 cut(s)	349, 889, 955, 1073, 1153
BtsIMutI	CAGTG	4 cut(s)	213, 1302, 1454, 1497
Cac8I	GCNNGC	4 cut(s)	102, 747, 1100, 1104
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	148, 1139
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	7 cut(s)	92, 593, 647, 819, 1036, 1210, 1418
CviAII	CATG	8 cut(s)	362, 557, 959, 1013, 1099, 1213, 1371, 1483
CviQI	GTAC	7 cut(s)	92, 593, 647, 819, 1036, 1210, 1418
DdeI	CTNAG	5 cut(s)	507, 629, 935, 1039, 1334
DpnI	GATC	5 cut(s)	298, 849, 1155, 1386, 1473
DpnII	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
DraIII	CACNNNGTG	1 cut(s)	590
DriI	GACNNNNNGTC	2 cut(s)	1069, 1287
EaeI	YGGCCR	4 cut(s)	576, 754, 837, 1475
Eam1104I	CTCTTC	4 cut(s)	240, 1301, 1314, 1360
Eam1105I	GACNNNNNGTC	2 cut(s)	1069, 1287
EarI	CTCTTC	4 cut(s)	240, 1301, 1314, 1360
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	1303
Eco47I	GGWCC	2 cut(s)	148, 1139
EcoRI	GAATTC	2 cut(s)	202, 812
EcoRII	CCWGG	3 cut(s)	671, 969, 1130
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	1056
FaeI	CATG	8 cut(s)	365, 560, 962, 1016, 1102, 1216, 1374, 1486
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 816, 848
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	8 cut(s)	361, 556, 958, 1012, 1098, 1212, 1370, 1482
FauI	CCCGC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	3 cut(s)	634, 732, 1248
Fnu4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 1455, 1502
FokI	GGATG	5 cut(s)	356, 896, 962, 1060, 1160
Fsp4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 1455, 1502
FspBI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
GluI	GCNGC	6 cut(s)	286, 420, 489, 561, 1455, 1502
GsuI	CTGGAG	1 cut(s)	992
HaeIII	GGCC	4 cut(s)	578, 756, 839, 1477
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	8 cut(s)	365, 560, 962, 1016, 1102, 1216, 1374, 1486
HincII	GTYRAC	1 cut(s)	956
HindII	GTYRAC	1 cut(s)	956
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	4 cut(s)	347, 553, 661, 856
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	722, 1222
Hpy166II	GTNNAC	8 cut(s)	396, 584, 593, 635, 733, 956, 1249, 1509
Hpy188I	TCNGA	7 cut(s)	666, 855, 938, 1042, 1089, 1143, 1337
Hpy188III	TCNNGA	2 cut(s)	947, 1061
Hpy8I	GTNNAC	8 cut(s)	396, 584, 593, 635, 733, 956, 1249, 1509
Hpy99I	CGWCG	1 cut(s)	1293
HpyAV	CCTTC	5 cut(s)	172, 707, 778, 881, 1355
HpyCH4III	ACNGT	5 cut(s)	132, 409, 730, 1189, 1492
HpyCH4IV	ACGT	3 cut(s)	775, 1065, 1416
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 1112, 1409
HpyF3I	CTNAG	5 cut(s)	507, 629, 935, 1039, 1334
HpySE526I	ACGT	3 cut(s)	775, 1065, 1416
Hsp92II	CATG	8 cut(s)	365, 560, 962, 1016, 1102, 1216, 1374, 1486
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
LguI	GCTCTTC	3 cut(s)	240, 1314, 1360
LmnI	GCTCC	3 cut(s)	428, 1462, 1498
Lsp1109I	GCAGC	5 cut(s)	297, 431, 475, 1466, 1513
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
MaeII	ACGT	3 cut(s)	775, 1065, 1416
MaeIII	GTNAC	2 cut(s)	1279, 1327
MalI	GATC	5 cut(s)	298, 849, 1155, 1386, 1473
MboI	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
MboII	GAAGA	8 cut(s)	227, 327, 531, 1019, 1076, 1318, 1331, 1377
MfeI	CAATTG	1 cut(s)	95
MlsI	TGGCCA	2 cut(s)	756, 839
MluNI	TGGCCA	2 cut(s)	756, 839
MmeI	TCCRAC	1 cut(s)	1101
MnlI	CCTC	5 cut(s)	124, 262, 464, 1390, 1538
Mox20I	TGGCCA	2 cut(s)	756, 839
MscI	TGGCCA	2 cut(s)	756, 839
MseI	TTAA	5 cut(s)	53, 74, 339, 471, 978
MslI	CAYNNNNRTG	1 cut(s)	948
Msp20I	TGGCCA	2 cut(s)	756, 839
MspA1I	CMGCKG	2 cut(s)	563, 1504
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	673, 971, 1132
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	1343
MvaI	CCWGG	3 cut(s)	673, 971, 1132
MwoI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 1112, 1409
NdeII	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	8 cut(s)	365, 560, 962, 1016, 1102, 1216, 1374, 1486
NlaIV	GGNNCC	2 cut(s)	275, 1186
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	2 cut(s)	1279, 1327
NspI	RCATGY	1 cut(s)	1102
PaeI	GCATGC	1 cut(s)	1102
PciSI	GCTCTTC	3 cut(s)	240, 1314, 1360
PctI	GAATGC	1 cut(s)	1343
PfeI	GAWTC	4 cut(s)	347, 553, 661, 856
PkrI	GCNGC	6 cut(s)	287, 421, 490, 562, 1456, 1503
PshAI	GACNNNNGTC	1 cut(s)	640
Psp6I	CCWGG	3 cut(s)	671, 969, 1130
PspGI	CCWGG	3 cut(s)	671, 969, 1130
PspN4I	GGNNCC	2 cut(s)	275, 1186
PspPI	GGNCC	2 cut(s)	148, 1139
PstNI	CAGNNNCTG	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	1504
RsaI	GTAC	7 cut(s)	93, 594, 648, 820, 1037, 1211, 1419
RsaNI	GTAC	7 cut(s)	92, 593, 647, 819, 1036, 1210, 1418
RseI	CAYNNNNRTG	1 cut(s)	948
SapI	GCTCTTC	3 cut(s)	240, 1314, 1360
SaqAI	TTAA	5 cut(s)	53, 74, 339, 471, 978
SatI	GCNGC	6 cut(s)	286, 420, 489, 561, 1455, 1502
Sau3AI	GATC	5 cut(s)	296, 847, 1153, 1384, 1471
Sau96I	GGNCC	2 cut(s)	148, 1139
ScrFI	CCNGG	3 cut(s)	673, 971, 1132
SfaNI	GCATC	1 cut(s)	1138
SfcI	CTRYAG	1 cut(s)	1421
SinI	GGWCC	2 cut(s)	148, 1139
SmiMI	CAYNNNNRTG	1 cut(s)	948
SphI	GCATGC	1 cut(s)	1102
SsiI	CCGC	3 cut(s)	561, 682, 1233
SspMI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
StyD4I	CCNGG	3 cut(s)	671, 969, 1130
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	5 cut(s)	132, 409, 730, 1189, 1492
TaiI	ACGT	3 cut(s)	778, 1068, 1419
TaqI	TCGA	3 cut(s)	1060, 1156, 1465
TatI	WGTACW	3 cut(s)	646, 1035, 1209
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	347, 553, 661, 856
Tru1I	TTAA	5 cut(s)	53, 74, 339, 471, 978
Tru9I	TTAA	5 cut(s)	53, 74, 339, 471, 978
TscAI	CASTG	4 cut(s)	213, 1302, 1454, 1497
TseFI	GTSAC	2 cut(s)	1279, 1327
TseI	GCWGC	5 cut(s)	285, 419, 488, 1454, 1501
Tsp45I	GTSAC	2 cut(s)	1279, 1327
TspDTI	ATGAA	7 cut(s)	360, 900, 909, 1019, 1229, 1319, 1499
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	213, 1302, 1454, 1497
VpaK11BI	GGWCC	2 cut(s)	148, 1139
XapI	RAATTY	4 cut(s)	202, 517, 799, 812
XceI	RCATGY	1 cut(s)	1102
XmiI	GTMKAC	3 cut(s)	634, 732, 1248
XspI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.