Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

2020474 .. 2023055

Gene Structure 2582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGCTTTGTTATCGTTTTGTTGAGAAAATGGAAATTGTGCATATAATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTTGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGGAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTTGGAAGCAGCCATTGTGGATCAGTCATTTCACTAGGAAGAAAACTTATGCAAAAGGAGTTTAAGGATGAATCCACTTTCCATCATGGAGAAAACAAGAACGCTTCTAAATCTATGTCCACAACCAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTCTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCACAATGTTCTTGCTAAGGACGCAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACTTCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGCATTCAAAAAGTTGAACGAAGGAAGAACATGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTACAGAAAATCTTTGATTTGGCTATCCAGTGTGCAGCTCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACAATAAGGGCAGACTACCTGAAAAGTCTCAAAAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

331

Amino Acids

36.4

Weight (kDa)

9.35

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	2 cut(s)	634, 732
AciI	CCGC	2 cut(s)	561, 682
AclWI	GGATC	2 cut(s)	304, 824
AcoI	YGGCCR	3 cut(s)	576, 754, 920
AcsI	RAATTY	2 cut(s)	202, 517
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	4 cut(s)	93, 594, 648, 864
AgsI	TTSAA	7 cut(s)	239, 522, 548, 615, 661, 793, 802
AjnI	CCWGG	1 cut(s)	671
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	9 cut(s)	218, 488, 536, 740, 749, 848, 902, 914, 949
AluI	AGCT	9 cut(s)	218, 488, 536, 740, 749, 848, 902, 914, 949
Alw26I	GTCTC	1 cut(s)	986
AlwI	GGATC	2 cut(s)	304, 824
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	576, 754, 920
ApeKI	GCWGC	5 cut(s)	285, 419, 488, 899, 946
ApoI	RAATTY	2 cut(s)	202, 517
Asp700I	GAANNNNTTC	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	722
AsuNHI	GCTAGC	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	148
BalI	TGGCCA	1 cut(s)	756
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	297, 431, 475, 911, 958
BccI	CCATC	2 cut(s)	366, 746
BciT130I	CCWGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	986
BfaI	CTAG	4 cut(s)	311, 600, 606, 746
BfmI	CTRYAG	1 cut(s)	866
BisI	GCNGC	6 cut(s)	286, 420, 489, 561, 900, 947
BlsI	GCNGC	6 cut(s)	287, 421, 490, 562, 901, 948
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	673
BmtI	GCTAGC	1 cut(s)	749
BoxI	GACNNNNGTC	1 cut(s)	640
Bpu10I	CCTNAGC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	277, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	151, 579, 892
BseBI	CCWGG	1 cut(s)	673
BseDI	CCNNGG	2 cut(s)	277, 672
BseGI	GGATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	643
BseNI	ACTGG	3 cut(s)	151, 579, 892
BseXI	GCAGC	5 cut(s)	297, 431, 475, 911, 958
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	3 cut(s)	578, 756, 922
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	986
BsmFI	GGGAC	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	578, 756, 922
Bsp1407I	TGTACA	1 cut(s)	646
Bsp143I	GATC	3 cut(s)	296, 829, 916
BspACI	CCGC	2 cut(s)	561, 682
BspANI	GGCC	3 cut(s)	578, 756, 922
BspCNI	CTCAG	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	304, 824
BspQI	GCTCTTC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	1 cut(s)	646
BsrI	ACTGG	3 cut(s)	151, 579, 892
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	2 cut(s)	277, 672
BssMI	GATC	3 cut(s)	296, 829, 916
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	673
Bst4CI	ACNGT	4 cut(s)	132, 409, 730, 937
Bst6I	CTCTTC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	1 cut(s)	646
BstC8I	GCNNGC	2 cut(s)	102, 747
BstDEI	CTNAG	2 cut(s)	507, 629
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	3 cut(s)	299, 832, 919
BstMAI	GTCTC	1 cut(s)	986
BstMBI	GATC	3 cut(s)	296, 829, 916
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 785, 854
BstNI	CCWGG	1 cut(s)	673
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	1 cut(s)	866
BstV1I	GCAGC	5 cut(s)	297, 431, 475, 911, 958
BsuRI	GGCC	3 cut(s)	578, 756, 922
BtsCI	GGATG	1 cut(s)	349
BtsIMutI	CAGTG	3 cut(s)	213, 899, 942
Cac8I	GCNNGC	2 cut(s)	102, 747
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	148
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	92, 593, 647, 863
CviAII	CATG	4 cut(s)	362, 557, 816, 928
CviQI	GTAC	4 cut(s)	92, 593, 647, 863
DdeI	CTNAG	2 cut(s)	507, 629
DpnI	GATC	3 cut(s)	298, 831, 918
DpnII	GATC	3 cut(s)	296, 829, 916
DraIII	CACNNNGTG	1 cut(s)	590
EaeI	YGGCCR	3 cut(s)	576, 754, 920
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	671
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	4 cut(s)	365, 560, 819, 931
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	4 cut(s)	361, 556, 815, 927
FauI	CCCGC	1 cut(s)	689
FblI	GTMKAC	2 cut(s)	634, 732
Fnu4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 900, 947
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	6 cut(s)	286, 420, 489, 561, 900, 947
FspBI	CTAG	4 cut(s)	311, 600, 606, 746
GluI	GCNGC	6 cut(s)	286, 420, 489, 561, 900, 947
HaeIII	GGCC	3 cut(s)	578, 756, 922
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	521
Hin1II	CATG	4 cut(s)	365, 560, 819, 931
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	347, 553, 661
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	6 cut(s)	396, 584, 593, 635, 733, 954
Hpy188I	TCNGA	1 cut(s)	666
Hpy8I	GTNNAC	6 cut(s)	396, 584, 593, 635, 733, 954
HpyAV	CCTTC	4 cut(s)	172, 707, 778, 800
HpyCH4III	ACNGT	4 cut(s)	132, 409, 730, 937
HpyCH4IV	ACGT	2 cut(s)	775, 861
HpyCH4V	TGCA	9 cut(s)	40, 251, 261, 328, 413, 779, 836, 857, 899
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 785, 854
HpyF3I	CTNAG	2 cut(s)	507, 629
HpySE526I	ACGT	2 cut(s)	775, 861
Hsp92II	CATG	4 cut(s)	365, 560, 819, 931
Kzo9I	GATC	3 cut(s)	296, 829, 916
LguI	GCTCTTC	1 cut(s)	240
LmnI	GCTCC	3 cut(s)	428, 907, 943
Lsp1109I	GCAGC	5 cut(s)	297, 431, 475, 911, 958
MaeI	CTAG	4 cut(s)	311, 600, 606, 746
MaeII	ACGT	2 cut(s)	775, 861
MalI	GATC	3 cut(s)	298, 831, 918
MboI	GATC	3 cut(s)	296, 829, 916
MboII	GAAGA	4 cut(s)	227, 327, 531, 822
MfeI	CAATTG	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	9 cut(s)	33, 45, 95, 202, 517, 529, 655, 821, 906
MluNI	TGGCCA	1 cut(s)	756
MnlI	CCTC	5 cut(s)	124, 262, 464, 835, 983
Mox20I	TGGCCA	1 cut(s)	756
MroXI	GAANNNNTTC	1 cut(s)	788
MscI	TGGCCA	1 cut(s)	756
MseI	TTAA	4 cut(s)	53, 74, 339, 471
Msp20I	TGGCCA	1 cut(s)	756
MspA1I	CMGCKG	2 cut(s)	563, 949
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	673
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	8 cut(s)	110, 282, 419, 428, 512, 746, 785, 854
NdeII	GATC	3 cut(s)	296, 829, 916
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	4 cut(s)	365, 560, 819, 931
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	721
PciSI	GCTCTTC	1 cut(s)	240
PctI	GAATGC	1 cut(s)	788
PdmI	GAANNNNTTC	1 cut(s)	788
PfeI	GAWTC	3 cut(s)	347, 553, 661
PkrI	GCNGC	6 cut(s)	287, 421, 490, 562, 901, 948
PshAI	GACNNNNGTC	1 cut(s)	640
Psp6I	CCWGG	1 cut(s)	671
PspGI	CCWGG	1 cut(s)	671
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	488
PvuII	CAGCTG	1 cut(s)	949
RsaI	GTAC	4 cut(s)	93, 594, 648, 864
RsaNI	GTAC	4 cut(s)	92, 593, 647, 863
SapI	GCTCTTC	1 cut(s)	240
SaqAI	TTAA	4 cut(s)	53, 74, 339, 471
SatI	GCNGC	6 cut(s)	286, 420, 489, 561, 900, 947
Sau3AI	GATC	3 cut(s)	296, 829, 916
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	673
SfcI	CTRYAG	1 cut(s)	866
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	9 cut(s)	33, 45, 95, 202, 517, 529, 655, 821, 906
SsiI	CCGC	2 cut(s)	561, 682
SspMI	CTAG	4 cut(s)	311, 600, 606, 746
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	132, 409, 730, 937
TaiI	ACGT	2 cut(s)	778, 864
TaqI	TCGA	1 cut(s)	910
TasI	AATT	9 cut(s)	33, 45, 95, 202, 517, 529, 655, 821, 906
TatI	WGTACW	1 cut(s)	646
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	3 cut(s)	347, 553, 661
Tru1I	TTAA	4 cut(s)	53, 74, 339, 471
Tru9I	TTAA	4 cut(s)	53, 74, 339, 471
TscAI	CASTG	3 cut(s)	213, 899, 942
TseI	GCWGC	5 cut(s)	285, 419, 488, 899, 946
TspDTI	ATGAA	2 cut(s)	360, 944
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	3 cut(s)	213, 899, 942
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	202, 517
XmiI	GTMKAC	2 cut(s)	634, 732
XmnI	GAANNNNTTC	1 cut(s)	788
XspI	CTAG	4 cut(s)	311, 600, 606, 746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.