Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG029100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGCTTTGTTATCGTTTCGTTGAGAAAATGGAAATTGTGCATATTATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTTGTCATACAGTCAAATGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGTAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTCGGAAGCAGCCATTGTGGATCAGTCATTTCACTAGTTGCAATAGCAGCAAGTGGAGCGTTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCACAATGTTCTTGCTAAGGACGCAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACATCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTACCGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCGAATGGTAATCTCAGAGAACATCTGGATGGTCAACATGGGAAAACCCTGGAGTTTAATCAGCGACTTGAAATAGCCATTGATGTTGCTCATGCCCTAACTTATCTTCATCTGTACACAGAAAAGCAAATTATCCATCGAGACGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATGCAGATCGAACACACATTTCTACTAAAGTGAAAGGAACTGTTGGCTACCTAGACCCGGAGTACATGAAAACATATCAACTCACCGCCAAAAGTGATGTCTACTCATTTGGGATATTACTTATAGAAATTGTGACGGGTCGTCGTCCAGTGGAGATGAAGAGGCCAGTTGAAGAGCGTGTCACTCTCAGATGGGCATTCAAAAAGTCGAACGAAGGAAGAACGTGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTAGTGAAAATCTTTGATTTGGCTATCCAGTGTGCAGCTCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACAATAAGGGCAGACTACCTTAAAAGTCTCAAAAGAGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

484

Amino Acids

54.03

Weight (kDa)

8.71

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	199 - 407	4.4e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	201 - 470	7.6e-50	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	3 cut(s)	538, 636, 1152
AciI	CCGC	3 cut(s)	465, 586, 1137
AclWI	GGATC	2 cut(s)	304, 1283
AcoI	YGGCCR	4 cut(s)	480, 658, 741, 1379
AcsI	RAATTY	4 cut(s)	202, 421, 703, 716
AdeI	CACNNNGTG	1 cut(s)	494
AfaI	GTAC	7 cut(s)	93, 498, 552, 724, 941, 1115, 1323
AfiI	CCNNNNNNNGG	1 cut(s)	1108
AgsI	TTSAA	9 cut(s)	239, 426, 452, 519, 565, 734, 896, 1223, 1252
AhdI	GACNNNNNGTC	2 cut(s)	973, 1191
AhlI	ACTAGT	2 cut(s)	310, 1324
AjiI	CACGTC	1 cut(s)	970
AjnI	CCWGG	3 cut(s)	575, 873, 1034
AjuI	GAANNNNNNNTTGG	2 cut(s)	609, 641
Alw26I	GTCTC	2 cut(s)	960, 1445
AlwI	GGATC	2 cut(s)	304, 1283
AlwNI	CAGNNNCTG	1 cut(s)	392
AoxI	GGCC	5 cut(s)	480, 658, 741, 1214, 1379
ApeKI	GCWGC	5 cut(s)	285, 323, 392, 1358, 1405
ApoI	RAATTY	4 cut(s)	202, 421, 703, 716
ArsI	GACNNNNNNTTYG	2 cut(s)	1134, 1166
AspS9I	GGNCC	2 cut(s)	148, 1043
AsuC2I	CCSGG	1 cut(s)	1109
AsuHPI	GGTGA	2 cut(s)	626, 1126
AsuNHI	GCTAGC	1 cut(s)	649
AvaII	GGWCC	2 cut(s)	148, 1043
BalI	TGGCCA	2 cut(s)	660, 743
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	5 cut(s)	297, 335, 379, 1370, 1417
BccI	CCATC	5 cut(s)	650, 848, 969, 1042, 1236
BciT130I	CCWGG	3 cut(s)	577, 875, 1036
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	1 cut(s)	1109
BcoDI	GTCTC	2 cut(s)	960, 1445
BcuI	ACTAGT	2 cut(s)	310, 1324
BfaI	CTAG	7 cut(s)	311, 504, 510, 650, 776, 1103, 1325
BisI	GCNGC	6 cut(s)	286, 324, 393, 465, 1359, 1406
BlsI	GCNGC	6 cut(s)	287, 325, 394, 466, 1360, 1407
Bme1390I	CCNGG	4 cut(s)	577, 875, 1036, 1109
Bme18I	GGWCC	2 cut(s)	148, 1043
BmeRI	GACNNNNNGTC	2 cut(s)	973, 1191
BmgBI	CACGTC	1 cut(s)	970
BmgT120I	GGNCC	2 cut(s)	148, 1043
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	4 cut(s)	577, 875, 1036, 1109
BmsI	GCATC	1 cut(s)	1042
BmtI	GCTAGC	1 cut(s)	653
BoxI	GACNNNNGTC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	896
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	1056
BsaJI	CCNNGG	3 cut(s)	277, 576, 873
BsaXI	ACNNNNNCTCC	2 cut(s)	1394, 1424
Bsc4I	CCNNNNNNNGG	1 cut(s)	1108
Bse118I	RCCGGY	1 cut(s)	478
Bse1I	ACTGG	5 cut(s)	151, 483, 1199, 1217, 1351
Bse8I	GATNNNNATC	1 cut(s)	1056
BseBI	CCWGG	3 cut(s)	577, 875, 1036
BseDI	CCNNGG	3 cut(s)	277, 576, 873
BseGI	GGATG	4 cut(s)	793, 859, 977, 1057
BseJI	GATNNNNATC	1 cut(s)	1056
BseLI	CCNNNNNNNGG	1 cut(s)	1108
BseMII	CTCAG	3 cut(s)	547, 853, 1252
BseNI	ACTGG	5 cut(s)	151, 483, 1199, 1217, 1351
BseXI	GCAGC	5 cut(s)	297, 335, 379, 1370, 1417
BsgI	GTGCAG	1 cut(s)	1377
BshFI	GGCC	5 cut(s)	482, 660, 743, 1216, 1381
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	479, 1109
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	1108
BsmAI	GTCTC	2 cut(s)	960, 1445
BsmBI	CGTCTC	1 cut(s)	960
BsmFI	GGGAC	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	1247
BsnI	GGCC	5 cut(s)	482, 660, 743, 1216, 1381
Bsp1407I	TGTACA	2 cut(s)	550, 939
Bsp143I	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
BspACI	CCGC	3 cut(s)	465, 586, 1137
BspANI	GGCC	5 cut(s)	482, 660, 743, 1216, 1381
BspCNI	CTCAG	3 cut(s)	546, 852, 1251
BspLI	GGNNCC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	653
BspPI	GGATC	2 cut(s)	304, 1283
BspQI	GCTCTTC	2 cut(s)	240, 1218
BspT107I	GGYRCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	478
BsrGI	TGTACA	2 cut(s)	550, 939
BsrI	ACTGG	5 cut(s)	151, 483, 1199, 1217, 1351
BssAI	RCCGGY	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	277, 576, 873
BssMI	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
Bst2UI	CCWGG	3 cut(s)	577, 875, 1036
Bst4CI	ACNGT	4 cut(s)	132, 634, 1093, 1396
Bst6I	CTCTTC	3 cut(s)	240, 1205, 1218
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	2 cut(s)	550, 939
BstC8I	GCNNGC	4 cut(s)	102, 651, 1004, 1008
BstDEI	CTNAG	4 cut(s)	411, 533, 839, 1238
BstF5I	GGATG	4 cut(s)	793, 859, 977, 1057
BstKTI	GATC	5 cut(s)	299, 754, 1060, 1291, 1378
BstMAI	GTCTC	2 cut(s)	960, 1445
BstMBI	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 282, 323, 332, 416, 650, 1016, 1313
BstNI	CCWGG	3 cut(s)	577, 875, 1036
BstNSI	RCATGY	1 cut(s)	1006
BstPAI	GACNNNNGTC	1 cut(s)	544
BstSCI	CCNGG	4 cut(s)	575, 873, 1034, 1107
BstV1I	GCAGC	5 cut(s)	297, 335, 379, 1370, 1417
BsuRI	GGCC	5 cut(s)	482, 660, 743, 1216, 1381
BtrI	CACGTC	1 cut(s)	970
BtsCI	GGATG	4 cut(s)	793, 859, 977, 1057
BtsIMutI	CAGTG	4 cut(s)	213, 1206, 1358, 1401
Cac8I	GCNNGC	4 cut(s)	102, 651, 1004, 1008
CaiI	CAGNNNCTG	1 cut(s)	392
Cfr10I	RCCGGY	1 cut(s)	478
Cfr13I	GGNCC	2 cut(s)	148, 1043
CseI	GACGC	1 cut(s)	425
Csp6I	GTAC	7 cut(s)	92, 497, 551, 723, 940, 1114, 1322
CviAII	CATG	6 cut(s)	461, 863, 917, 1003, 1117, 1387
CviQI	GTAC	7 cut(s)	92, 497, 551, 723, 940, 1114, 1322
DdeI	CTNAG	4 cut(s)	411, 533, 839, 1238
DpnI	GATC	5 cut(s)	298, 753, 1059, 1290, 1377
DpnII	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
DraIII	CACNNNGTG	1 cut(s)	494
DriI	GACNNNNNGTC	2 cut(s)	973, 1191
EaeI	YGGCCR	4 cut(s)	480, 658, 741, 1379
Eam1104I	CTCTTC	3 cut(s)	240, 1205, 1218
Eam1105I	GACNNNNNGTC	2 cut(s)	973, 1191
EarI	CTCTTC	3 cut(s)	240, 1205, 1218
Eco47I	GGWCC	2 cut(s)	148, 1043
EcoRI	GAATTC	2 cut(s)	202, 716
EcoRII	CCWGG	3 cut(s)	575, 873, 1034
Esp3I	CGTCTC	1 cut(s)	960
FaeI	CATG	6 cut(s)	464, 866, 920, 1006, 1120, 1390
FalI	AAGNNNNNCTT	4 cut(s)	680, 712, 720, 752
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	6 cut(s)	460, 862, 916, 1002, 1116, 1386
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	3 cut(s)	538, 636, 1152
Fnu4HI	GCNGC	6 cut(s)	286, 324, 393, 465, 1359, 1406
FokI	GGATG	4 cut(s)	800, 866, 964, 1064
Fsp4HI	GCNGC	6 cut(s)	286, 324, 393, 465, 1359, 1406
FspBI	CTAG	7 cut(s)	311, 504, 510, 650, 776, 1103, 1325
GluI	GCNGC	6 cut(s)	286, 324, 393, 465, 1359, 1406
GsuI	CTGGAG	1 cut(s)	896
HaeIII	GGCC	5 cut(s)	482, 660, 743, 1216, 1381
HapII	CCGG	2 cut(s)	479, 1109
HgaI	GACGC	1 cut(s)	425
Hin1II	CATG	6 cut(s)	464, 866, 920, 1006, 1120, 1390
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	3 cut(s)	457, 565, 760
HpaII	CCGG	2 cut(s)	479, 1109
HphI	GGTGA	2 cut(s)	626, 1126
Hpy166II	GTNNAC	8 cut(s)	488, 497, 539, 637, 860, 942, 1153, 1413
Hpy188I	TCNGA	7 cut(s)	281, 570, 759, 842, 993, 1047, 1241
Hpy188III	TCNNGA	2 cut(s)	851, 965
Hpy8I	GTNNAC	8 cut(s)	488, 497, 539, 637, 860, 942, 1153, 1413
Hpy99I	CGWCG	1 cut(s)	1197
HpyAV	CCTTC	4 cut(s)	611, 682, 785, 1259
HpyCH4III	ACNGT	4 cut(s)	132, 634, 1093, 1396
HpyCH4IV	ACGT	4 cut(s)	679, 969, 1274, 1320
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 282, 323, 332, 416, 650, 1016, 1313
HpyF3I	CTNAG	4 cut(s)	411, 533, 839, 1238
HpySE526I	ACGT	4 cut(s)	679, 969, 1274, 1320
Hsp92II	CATG	6 cut(s)	464, 866, 920, 1006, 1120, 1390
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
LguI	GCTCTTC	2 cut(s)	240, 1218
LmnI	GCTCC	3 cut(s)	332, 1366, 1402
Lsp1109I	GCAGC	5 cut(s)	297, 335, 379, 1370, 1417
LweI	GCATC	1 cut(s)	1042
MaeI	CTAG	7 cut(s)	311, 504, 510, 650, 776, 1103, 1325
MaeII	ACGT	4 cut(s)	679, 969, 1274, 1320
MaeIII	GTNAC	2 cut(s)	1183, 1231
MalI	GATC	5 cut(s)	298, 753, 1059, 1290, 1377
MboI	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
MboII	GAAGA	7 cut(s)	227, 435, 923, 980, 1222, 1235, 1281
MfeI	CAATTG	1 cut(s)	95
MlsI	TGGCCA	2 cut(s)	660, 743
MluNI	TGGCCA	2 cut(s)	660, 743
MmeI	TCCRAC	1 cut(s)	1005
MnlI	CCTC	6 cut(s)	124, 262, 287, 1206, 1294, 1442
Mox20I	TGGCCA	2 cut(s)	660, 743
MscI	TGGCCA	2 cut(s)	660, 743
MseI	TTAA	5 cut(s)	53, 74, 375, 882, 1434
MslI	CAYNNNNRTG	1 cut(s)	852
Msp20I	TGGCCA	2 cut(s)	660, 743
MspA1I	CMGCKG	2 cut(s)	467, 1408
MspI	CCGG	2 cut(s)	479, 1109
MspR9I	CCNGG	4 cut(s)	577, 875, 1036, 1109
MunI	CAATTG	1 cut(s)	95
Mva1269I	GAATGC	1 cut(s)	1247
MvaI	CCWGG	3 cut(s)	577, 875, 1036
MwoI	GCNNNNNNNGC	8 cut(s)	110, 282, 323, 332, 416, 650, 1016, 1313
NciI	CCSGG	1 cut(s)	1109
NdeII	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
NheI	GCTAGC	1 cut(s)	649
NlaIII	CATG	6 cut(s)	464, 866, 920, 1006, 1120, 1390
NlaIV	GGNNCC	1 cut(s)	275
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	2 cut(s)	1183, 1231
NspI	RCATGY	1 cut(s)	1006
PaeI	GCATGC	1 cut(s)	1006
PciSI	GCTCTTC	2 cut(s)	240, 1218
PctI	GAATGC	1 cut(s)	1247
PfeI	GAWTC	3 cut(s)	457, 565, 760
PkrI	GCNGC	6 cut(s)	287, 325, 394, 466, 1360, 1407
PshAI	GACNNNNGTC	1 cut(s)	544
Psp6I	CCWGG	3 cut(s)	575, 873, 1034
PspGI	CCWGG	3 cut(s)	575, 873, 1034
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	2 cut(s)	148, 1043
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	1408
RsaI	GTAC	7 cut(s)	93, 498, 552, 724, 941, 1115, 1323
RsaNI	GTAC	7 cut(s)	92, 497, 551, 723, 940, 1114, 1322
RseI	CAYNNNNRTG	1 cut(s)	852
SapI	GCTCTTC	2 cut(s)	240, 1218
SaqAI	TTAA	5 cut(s)	53, 74, 375, 882, 1434
SatI	GCNGC	6 cut(s)	286, 324, 393, 465, 1359, 1406
Sau3AI	GATC	5 cut(s)	296, 751, 1057, 1288, 1375
Sau96I	GGNCC	2 cut(s)	148, 1043
ScrFI	CCNGG	4 cut(s)	577, 875, 1036, 1109
SfaNI	GCATC	1 cut(s)	1042
SinI	GGWCC	2 cut(s)	148, 1043
SmiMI	CAYNNNNRTG	1 cut(s)	852
SpeI	ACTAGT	2 cut(s)	310, 1324
SphI	GCATGC	1 cut(s)	1006
SsiI	CCGC	3 cut(s)	465, 586, 1137
SspMI	CTAG	7 cut(s)	311, 504, 510, 650, 776, 1103, 1325
StyD4I	CCNGG	4 cut(s)	575, 873, 1034, 1107
TaaI	ACNGT	4 cut(s)	132, 634, 1093, 1396
TaiI	ACGT	4 cut(s)	682, 972, 1277, 1323
TaqI	TCGA	4 cut(s)	964, 1060, 1259, 1369
TatI	WGTACW	3 cut(s)	550, 939, 1113
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	3 cut(s)	457, 565, 760
Tru1I	TTAA	5 cut(s)	53, 74, 375, 882, 1434
Tru9I	TTAA	5 cut(s)	53, 74, 375, 882, 1434
TscAI	CASTG	4 cut(s)	213, 1206, 1358, 1401
TseFI	GTSAC	2 cut(s)	1183, 1231
TseI	GCWGC	5 cut(s)	285, 323, 392, 1358, 1405
Tsp45I	GTSAC	2 cut(s)	1183, 1231
TspDTI	ATGAA	6 cut(s)	804, 813, 923, 1133, 1223, 1403
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	4 cut(s)	213, 1206, 1358, 1401
VpaK11BI	GGWCC	2 cut(s)	148, 1043
XapI	RAATTY	4 cut(s)	202, 421, 703, 716
XceI	RCATGY	1 cut(s)	1006
XmiI	GTMKAC	3 cut(s)	538, 636, 1152
XspI	CTAG	7 cut(s)	311, 504, 510, 650, 776, 1103, 1325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.