RchiOBHm_Chr2g0087441

Calmodulin-binding receptor-like cytoplasmic kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
2170527 .. 2174130
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46289

Sequence Viewer

Length: 1551 bp
ATGCTTTGTTATCATTTCGTTGAGAAAATGGAAATTGTGCATATTATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCGTTAGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGTAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTCAGAAGCAGCCATTGTGGATCAGTCATTTCACTAGGAAGAAAACTTATGCAAAAGGAGTTTGAGGATGAATCCACTTTCCATCATGGAGAAAACAAGAACGCTTCTGAATCTATGTCCACGACTAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCAAAATGTTCTTGCTAAGGACGCAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACTTCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTACCGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCGAATGGTAATCTCAGAGAACATCTGGATGTTCAACATGGGAAAACCCTGGAGTTTAATCAGCGACTTGAAATAGCCATTGATGTTGCTCATGCCCTAACTTATCTTCATCTGTACTCAGAAAAGCAAATTATCCATCGAGACGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATGCAGATCGAACACACATTTCTACTAAAGTGAAAGGAACCGTTGGCTACCTAGACCCGGAGTACATGAAAACATATCAACTCACCGCCAAAAGTGATGTCTACTCATTTGGGATATTACTTATAGAAATTGTGACGGGTCGTCGTCCAGTGGAGATGAAGAGACCAGTTGAAGAGCGTGTCACTCTCAGATGGGCATTCAAAAAGTTGAACGAAGGAAGAACGTGGGAATTGATTGATCCTGCAATAGAGGAAGCTGTAAATGCAGACGTACTACAGAAAATCTTTGATTTGGCTATCCAGTGTGCGGCTCCAATTCGAGCTGATCGGCCAGACATGAAAACAGTGGGGGAGCAGCTGTGGACAATAAGGGCAGACTACCTGAAAAGTCTCAAAAGAGGATAG

Protein Analysis

516

Amino Acids

57.81

Weight (kDa)

8.69

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 231 - 500 2.1e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 233 - 502 9.5e-51 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 273
AccI GTMKAC 3 cut(s) 634, 732, 1248
AciI CCGC 4 cut(s) 561, 682, 1233, 1454
AclWI GGATC 2 cut(s) 304, 1379
AcoI YGGCCR 4 cut(s) 576, 754, 837, 1475
AcsI RAATTY 4 cut(s) 202, 517, 799, 812
AdeI CACNNNGTG 1 cut(s) 590
AfaI GTAC 7 cut(s) 93, 594, 648, 820, 1037, 1211, 1419
AfiI CCNNNNNNNGG 2 cut(s) 1204, 1453
AhdI GACNNNNNGTC 2 cut(s) 1069, 1287
AjiI CACGTC 1 cut(s) 1066
AjnI CCWGG 3 cut(s) 671, 969, 1130
AjuI GAANNNNNNNTTGG 2 cut(s) 705, 737
AluBI AGCT 9 cut(s) 218, 488, 536, 740, 749, 868, 1403, 1469, 1504
AluI AGCT 9 cut(s) 218, 488, 536, 740, 749, 868, 1403, 1469, 1504
Alw26I GTCTC 3 cut(s) 1056, 1303, 1541
AlwI GGATC 2 cut(s) 304, 1379
AlwNI CAGNNNCTG 1 cut(s) 488
AoxI GGCC 4 cut(s) 576, 754, 837, 1475
ApeKI GCWGC 4 cut(s) 285, 419, 488, 1501
ApoI RAATTY 4 cut(s) 202, 517, 799, 812
ArsI GACNNNNNNTTYG 2 cut(s) 1230, 1262
AspS9I GGNCC 2 cut(s) 148, 1139
AsuC2I CCSGG 1 cut(s) 1205
AsuHPI GGTGA 2 cut(s) 722, 1222
AsuNHI GCTAGC 1 cut(s) 745
AvaII GGWCC 2 cut(s) 148, 1139
BalI TGGCCA 2 cut(s) 756, 839
BanI GGYRCC 1 cut(s) 273
BbvI GCAGC 4 cut(s) 297, 431, 475, 1513
BccI CCATC 5 cut(s) 366, 746, 1065, 1138, 1332
BciT130I CCWGG 3 cut(s) 673, 971, 1132
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 1205
BcoDI GTCTC 3 cut(s) 1056, 1303, 1541
BfaI CTAG 6 cut(s) 311, 600, 606, 746, 872, 1199
BfmI CTRYAG 1 cut(s) 1421
BisI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
BlsI GCNGC 6 cut(s) 287, 421, 490, 562, 1456, 1503
Bme1390I CCNGG 4 cut(s) 673, 971, 1132, 1205
Bme18I GGWCC 2 cut(s) 148, 1139
BmeRI GACNNNNNGTC 2 cut(s) 1069, 1287
BmgBI CACGTC 1 cut(s) 1066
BmgT120I GGNCC 2 cut(s) 148, 1139
BmiI GGNNCC 3 cut(s) 275, 1186, 1458
BmrFI CCNGG 4 cut(s) 673, 971, 1132, 1205
BmsI GCATC 1 cut(s) 1138
BmtI GCTAGC 1 cut(s) 749
BoxI GACNNNNGTC 1 cut(s) 640
BpmI CTGGAG 1 cut(s) 992
Bpu10I CCTNAGC 1 cut(s) 507
BpuMI CCSGG 1 cut(s) 1205
BsaBI GATNNNNATC 1 cut(s) 1152
BsaI GGTCTC 1 cut(s) 1303
BsaJI CCNNGG 2 cut(s) 672, 969
BsaXI ACNNNNNCTCC 2 cut(s) 1490, 1520
Bsc4I CCNNNNNNNGG 2 cut(s) 1204, 1453
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 5 cut(s) 151, 579, 1295, 1313, 1447
Bse8I GATNNNNATC 1 cut(s) 1152
BseBI CCWGG 3 cut(s) 673, 971, 1132
BseDI CCNNGG 2 cut(s) 672, 969
BseGI GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BseJI GATNNNNATC 1 cut(s) 1152
BseLI CCNNNNNNNGG 2 cut(s) 1204, 1453
BseMII CTCAG 5 cut(s) 292, 643, 949, 1053, 1348
BseNI ACTGG 5 cut(s) 151, 579, 1295, 1313, 1447
BseXI GCAGC 4 cut(s) 297, 431, 475, 1513
BshFI GGCC 4 cut(s) 578, 756, 839, 1477
BshNI GGYRCC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 575, 1205
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 1204, 1453
BsmAI GTCTC 3 cut(s) 1056, 1303, 1541
BsmBI CGTCTC 1 cut(s) 1056
BsmFI GGGAC 1 cut(s) 444
BsmI GAATGC 1 cut(s) 1343
BsnI GGCC 4 cut(s) 578, 756, 839, 1477
Bso31I GGTCTC 1 cut(s) 1303
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 5 cut(s) 296, 847, 1153, 1384, 1471
BspACI CCGC 4 cut(s) 561, 682, 1233, 1454
BspANI GGCC 4 cut(s) 578, 756, 839, 1477
BspCNI CTCAG 5 cut(s) 291, 642, 948, 1052, 1347
BspLI GGNNCC 3 cut(s) 275, 1186, 1458
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 2 cut(s) 304, 1379
BspQI GCTCTTC 2 cut(s) 240, 1314
BspT107I GGYRCC 1 cut(s) 273
BspTNI GGTCTC 1 cut(s) 1303
BsrFI RCCGGY 1 cut(s) 574
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 5 cut(s) 151, 579, 1295, 1313, 1447
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 2 cut(s) 672, 969
BssMI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
Bst2UI CCWGG 3 cut(s) 673, 971, 1132
Bst4CI ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
Bst6I CTCTTC 3 cut(s) 240, 1301, 1314
BstAPI GCANNNNNTGC 1 cut(s) 110
BstAUI TGTACA 1 cut(s) 646
BstC8I GCNNGC 4 cut(s) 102, 747, 1100, 1104
BstDEI CTNAG 6 cut(s) 278, 507, 629, 935, 1039, 1334
BstF5I GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BstKTI GATC 5 cut(s) 299, 850, 1156, 1387, 1474
BstMAI GTCTC 3 cut(s) 1056, 1303, 1541
BstMBI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
BstMWI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
BstNI CCWGG 3 cut(s) 673, 971, 1132
BstNSI RCATGY 1 cut(s) 1102
BstPAI GACNNNNGTC 1 cut(s) 640
BstSCI CCNGG 4 cut(s) 671, 969, 1130, 1203
BstSFI CTRYAG 1 cut(s) 1421
BstV1I GCAGC 4 cut(s) 297, 431, 475, 1513
BsuRI GGCC 4 cut(s) 578, 756, 839, 1477
BtrI CACGTC 1 cut(s) 1066
BtsCI GGATG 5 cut(s) 349, 889, 955, 1073, 1153
BtsIMutI CAGTG 4 cut(s) 213, 1302, 1454, 1497
Cac8I GCNNGC 4 cut(s) 102, 747, 1100, 1104
CaiI CAGNNNCTG 1 cut(s) 488
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 148, 1139
CseI GACGC 1 cut(s) 521
Csp6I GTAC 7 cut(s) 92, 593, 647, 819, 1036, 1210, 1418
CviAII CATG 7 cut(s) 362, 557, 959, 1013, 1099, 1213, 1483
CviQI GTAC 7 cut(s) 92, 593, 647, 819, 1036, 1210, 1418
DdeI CTNAG 6 cut(s) 278, 507, 629, 935, 1039, 1334
DpnI GATC 5 cut(s) 298, 849, 1155, 1386, 1473
DpnII GATC 5 cut(s) 296, 847, 1153, 1384, 1471
DraIII CACNNNGTG 1 cut(s) 590
DriI GACNNNNNGTC 2 cut(s) 1069, 1287
EaeI YGGCCR 4 cut(s) 576, 754, 837, 1475
Eam1104I CTCTTC 3 cut(s) 240, 1301, 1314
Eam1105I GACNNNNNGTC 2 cut(s) 1069, 1287
EarI CTCTTC 3 cut(s) 240, 1301, 1314
Eco31I GGTCTC 1 cut(s) 1303
Eco47I GGWCC 2 cut(s) 148, 1139
EcoRI GAATTC 2 cut(s) 202, 812
EcoRII CCWGG 3 cut(s) 671, 969, 1130
Esp3I CGTCTC 1 cut(s) 1056
FaeI CATG 7 cut(s) 365, 560, 962, 1016, 1102, 1216, 1486
FalI AAGNNNNNCTT 4 cut(s) 776, 808, 816, 848
FaqI GGGAC 1 cut(s) 444
FatI CATG 7 cut(s) 361, 556, 958, 1012, 1098, 1212, 1482
FauI CCCGC 1 cut(s) 689
FbaI TGATCA 1 cut(s) 847
FblI GTMKAC 3 cut(s) 634, 732, 1248
Fnu4HI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
FokI GGATG 5 cut(s) 356, 896, 962, 1060, 1160
Fsp4HI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
FspBI CTAG 6 cut(s) 311, 600, 606, 746, 872, 1199
GluI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
GsuI CTGGAG 1 cut(s) 992
HaeIII GGCC 4 cut(s) 578, 756, 839, 1477
HapII CCGG 2 cut(s) 575, 1205
HgaI GACGC 1 cut(s) 521
Hin1II CATG 7 cut(s) 365, 560, 962, 1016, 1102, 1216, 1486
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 5 cut(s) 347, 386, 553, 661, 856
HpaII CCGG 2 cut(s) 575, 1205
HphI GGTGA 2 cut(s) 722, 1222
Hpy166II GTNNAC 7 cut(s) 396, 584, 593, 635, 733, 1249, 1509
Hpy188I TCNGA 9 cut(s) 281, 385, 666, 855, 938, 1042, 1089, 1143, 1337
Hpy188III TCNNGA 2 cut(s) 947, 1061
Hpy8I GTNNAC 7 cut(s) 396, 584, 593, 635, 733, 1249, 1509
Hpy99I CGWCG 1 cut(s) 1293
HpyAV CCTTC 4 cut(s) 707, 778, 881, 1355
HpyCH4III ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
HpyCH4IV ACGT 4 cut(s) 775, 1065, 1370, 1416
HpyF10VI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
HpyF3I CTNAG 6 cut(s) 278, 507, 629, 935, 1039, 1334
HpySE526I ACGT 4 cut(s) 775, 1065, 1370, 1416
Hsp92II CATG 7 cut(s) 365, 560, 962, 1016, 1102, 1216, 1486
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 5 cut(s) 296, 847, 1153, 1384, 1471
LguI GCTCTTC 2 cut(s) 240, 1314
LmnI GCTCC 3 cut(s) 428, 1462, 1498
Lsp1109I GCAGC 4 cut(s) 297, 431, 475, 1513
LweI GCATC 1 cut(s) 1138
MaeI CTAG 6 cut(s) 311, 600, 606, 746, 872, 1199
MaeII ACGT 4 cut(s) 775, 1065, 1370, 1416
MaeIII GTNAC 2 cut(s) 1279, 1327
MalI GATC 5 cut(s) 298, 849, 1155, 1386, 1473
MboI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
MboII GAAGA 8 cut(s) 227, 327, 531, 1019, 1076, 1318, 1331, 1377
MfeI CAATTG 1 cut(s) 95
MlsI TGGCCA 2 cut(s) 756, 839
MluNI TGGCCA 2 cut(s) 756, 839
MmeI TCCRAC 1 cut(s) 1101
MnlI CCTC 6 cut(s) 124, 262, 287, 334, 1390, 1538
Mox20I TGGCCA 2 cut(s) 756, 839
MscI TGGCCA 2 cut(s) 756, 839
MseI TTAA 4 cut(s) 53, 74, 471, 978
MslI CAYNNNNRTG 1 cut(s) 948
Msp20I TGGCCA 2 cut(s) 756, 839
MspA1I CMGCKG 2 cut(s) 563, 1504
MspI CCGG 2 cut(s) 575, 1205
MspR9I CCNGG 4 cut(s) 673, 971, 1132, 1205
MunI CAATTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 1343
MvaI CCWGG 3 cut(s) 673, 971, 1132
MwoI GCNNNNNNNGC 8 cut(s) 110, 282, 419, 428, 512, 746, 1112, 1409
NciI CCSGG 1 cut(s) 1205
NdeII GATC 5 cut(s) 296, 847, 1153, 1384, 1471
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 7 cut(s) 365, 560, 962, 1016, 1102, 1216, 1486
NlaIV GGNNCC 3 cut(s) 275, 1186, 1458
NmeAIII GCCGAG 1 cut(s) 721
NmuCI GTSAC 2 cut(s) 1279, 1327
NspI RCATGY 1 cut(s) 1102
PaeI GCATGC 1 cut(s) 1102
PciSI GCTCTTC 2 cut(s) 240, 1314
PctI GAATGC 1 cut(s) 1343
PfeI GAWTC 5 cut(s) 347, 386, 553, 661, 856
PkrI GCNGC 6 cut(s) 287, 421, 490, 562, 1456, 1503
PshAI GACNNNNGTC 1 cut(s) 640
Psp6I CCWGG 3 cut(s) 671, 969, 1130
PspGI CCWGG 3 cut(s) 671, 969, 1130
PspN4I GGNNCC 3 cut(s) 275, 1186, 1458
PspPI GGNCC 2 cut(s) 148, 1139
PstNI CAGNNNCTG 1 cut(s) 488
PvuII CAGCTG 1 cut(s) 1504
RsaI GTAC 7 cut(s) 93, 594, 648, 820, 1037, 1211, 1419
RsaNI GTAC 7 cut(s) 92, 593, 647, 819, 1036, 1210, 1418
RseI CAYNNNNRTG 1 cut(s) 948
SapI GCTCTTC 2 cut(s) 240, 1314
SaqAI TTAA 4 cut(s) 53, 74, 471, 978
SatI GCNGC 6 cut(s) 286, 420, 489, 561, 1455, 1502
Sau3AI GATC 5 cut(s) 296, 847, 1153, 1384, 1471
Sau96I GGNCC 2 cut(s) 148, 1139
ScrFI CCNGG 4 cut(s) 673, 971, 1132, 1205
SfaNI GCATC 1 cut(s) 1138
SfcI CTRYAG 1 cut(s) 1421
SinI GGWCC 2 cut(s) 148, 1139
SmiMI CAYNNNNRTG 1 cut(s) 948
SphI GCATGC 1 cut(s) 1102
SsiI CCGC 4 cut(s) 561, 682, 1233, 1454
SspMI CTAG 6 cut(s) 311, 600, 606, 746, 872, 1199
StyD4I CCNGG 4 cut(s) 671, 969, 1130, 1203
TaaI ACNGT 5 cut(s) 132, 409, 730, 1189, 1492
TaiI ACGT 4 cut(s) 778, 1068, 1373, 1419
TaqI TCGA 3 cut(s) 1060, 1156, 1465
TatI WGTACW 3 cut(s) 646, 1035, 1209
TauI GCSGC 2 cut(s) 563, 1457
TfiI GAWTC 5 cut(s) 347, 386, 553, 661, 856
Tru1I TTAA 4 cut(s) 53, 74, 471, 978
Tru9I TTAA 4 cut(s) 53, 74, 471, 978
TscAI CASTG 4 cut(s) 213, 1302, 1454, 1497
TseFI GTSAC 2 cut(s) 1279, 1327
TseI GCWGC 4 cut(s) 285, 419, 488, 1501
Tsp45I GTSAC 2 cut(s) 1279, 1327
TspDTI ATGAA 7 cut(s) 360, 900, 909, 1019, 1229, 1319, 1499
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 4 cut(s) 213, 1302, 1454, 1497
VpaK11BI GGWCC 2 cut(s) 148, 1139
XapI RAATTY 4 cut(s) 202, 517, 799, 812
XceI RCATGY 1 cut(s) 1102
XmiI GTMKAC 3 cut(s) 634, 732, 1248
XspI CTAG 6 cut(s) 311, 600, 606, 746, 872, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.