Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Forward (+)

56564562 .. 56564972

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0475400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAATCCTTCTCCAATTGCCAGTTCTCTGCTAATACATGGCTCTGAGGACCACAATTATCCATTCAAAAGTTCAAAGCTCAGCCCCGAAAACAAAGTCGAAAATCCAACCCAGAACTCAAGTATTCCAACAACACACACCCAATTCCGAAAACCGGCATTAGCAGCAGCACTCTTGATAAATGCAGCCACAGGTGACAAACCTCTGATACCTCACTACGCCATGCACGAGATATACAGGACGACTATGTCCGCGCATCTCCGGTGTCAGAGCGTCGTGCTGGAGAAGATGACTCGCCTCATGTACACTCCTTTCGTTCTGGCGATGGGTTTCGGCGACCTCGAACCTGAGGTCTTCAGTACTTTCATGGCGCAAGAATCGACCTTCCGCGAGGAGAGTGCAAAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

136

Amino Acids

15.18

Weight (kDa)

6.58

Isoelectric Point (pI)

57.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	247
AccII	CGCG	2 cut(s)	254, 390
AciI	CCGC	2 cut(s)	252, 388
AcuI	CTGAAG	1 cut(s)	340
AfaI	GTAC	2 cut(s)	305, 361
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	67, 75
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
ApeKI	GCWGC	3 cut(s)	164, 167, 185
ArsI	GACNNNNNNTTYG	4 cut(s)	81, 113, 336, 368
AspLEI	GCGC	2 cut(s)	256, 373
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	348
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	346
BbvI	GCAGC	3 cut(s)	176, 179, 197
BccI	CCATC	1 cut(s)	319
BcgI	CGANNNNNNTGC	1 cut(s)	380
BisI	GCNGC	3 cut(s)	165, 168, 186
BlpI	GCTNAGC	1 cut(s)	80
BlsI	GCNGC	3 cut(s)	166, 169, 187
BmcAI	AGTACT	1 cut(s)	361
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	265
BpiI	GAAGAC	1 cut(s)	346
BpmI	CTGGAG	1 cut(s)	302
Bpu1102I	GCTNAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse118I	RCCGGY	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	21
Bse21I	CCTNAGG	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	36, 94, 339
BseNI	ACTGG	1 cut(s)	21
BseRI	GAGGAG	1 cut(s)	407
BseXI	GCAGC	3 cut(s)	176, 179, 197
Bsh1236I	CGCG	2 cut(s)	254, 390
BsiSI	CCGG	2 cut(s)	155, 262
BslI	CCNNNNNNNGG	1 cut(s)	154
Bsp1407I	TGTACA	1 cut(s)	303
Bsp1720I	GCTNAGC	1 cut(s)	80
BspACI	CCGC	2 cut(s)	252, 388
BspCNI	CTCAG	3 cut(s)	37, 93, 340
BspFNI	CGCG	2 cut(s)	254, 390
BsrFI	RCCGGY	1 cut(s)	154
BsrGI	TGTACA	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	154
BssSI	CACGAG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	227
BstAUI	TGTACA	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	45, 80, 348
BstFNI	CGCG	2 cut(s)	254, 390
BstHHI	GCGC	2 cut(s)	256, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstUI	CGCG	2 cut(s)	254, 390
BstV1I	GCAGC	3 cut(s)	176, 179, 197
BstV2I	GAAGAC	1 cut(s)	346
Bsu36I	CCTNAGG	1 cut(s)	348
BtgZI	GCGATG	1 cut(s)	338
CfoI	GCGC	2 cut(s)	256, 373
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	304, 360
CviAII	CATG	4 cut(s)	38, 223, 301, 367
CviJI	RGCY	4 cut(s)	42, 79, 84, 188
CviKI_1	RGCY	4 cut(s)	42, 79, 84, 188
CviQI	GTAC	2 cut(s)	304, 360
DdeI	CTNAG	3 cut(s)	45, 80, 348
DrdI	GACNNNNNNGTC	1 cut(s)	247
DseDI	GACNNNNNNGTC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	348
FaeI	CATG	4 cut(s)	41, 226, 304, 370
FaiI	YATR	6 cut(s)	39, 224, 235, 248, 302, 368
FatI	CATG	4 cut(s)	37, 222, 300, 366
Fnu4HI	GCNGC	3 cut(s)	165, 168, 186
Fsp4HI	GCNGC	3 cut(s)	165, 168, 186
GlaI	GCGC	2 cut(s)	255, 372
GluI	GCNGC	3 cut(s)	165, 168, 186
GsuI	CTGGAG	1 cut(s)	302
HapII	CCGG	2 cut(s)	155, 262
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	2 cut(s)	256, 373
Hin1II	CATG	4 cut(s)	41, 226, 304, 370
Hin6I	GCGC	2 cut(s)	254, 371
HinP1I	GCGC	2 cut(s)	254, 371
HinfI	GANTC	3 cut(s)	4, 292, 377
HpaII	CCGG	2 cut(s)	155, 262
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	4 cut(s)	46, 149, 207, 270
Hpy188III	TCNNGA	1 cut(s)	175
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	18, 394
HpyCH4V	TGCA	3 cut(s)	185, 226, 401
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	3 cut(s)	45, 80, 348
Hsp92II	CATG	4 cut(s)	41, 226, 304, 370
HspAI	GCGC	2 cut(s)	254, 371
LpnPI	CCDG	9 cut(s)	34, 125, 168, 177, 223, 266, 275, 305, 360
Lsp1109I	GCAGC	3 cut(s)	176, 179, 197
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	2 cut(s)	298, 346
MfeI	CAATTG	1 cut(s)	15
MluCI	AATT	4 cut(s)	15, 55, 143, 404
MlyI	GAGTC	1 cut(s)	286
MmeI	TCCRAC	2 cut(s)	131, 152
MnlI	CCTC	7 cut(s)	40, 213, 222, 308, 343, 350, 385
MspI	CCGG	2 cut(s)	155, 262
MunI	CAATTG	1 cut(s)	15
MvnI	CGCG	2 cut(s)	254, 390
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIII	CATG	4 cut(s)	41, 226, 304, 370
NmuCI	GTSAC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 339
PfeI	GAWTC	2 cut(s)	4, 377
PflFI	GACNNNGTC	1 cut(s)	247
PkrI	GCNGC	3 cut(s)	166, 169, 187
PleI	GAGTC	1 cut(s)	286
PpsI	GAGTC	1 cut(s)	286
PspPI	GGNCC	1 cut(s)	49
PsyI	GACNNNGTC	1 cut(s)	247
RsaI	GTAC	2 cut(s)	305, 361
RsaNI	GTAC	2 cut(s)	304, 360
SatI	GCNGC	3 cut(s)	165, 168, 186
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	1 cut(s)	286
SetI	ASST	8 cut(s)	81, 196, 205, 214, 342, 349, 354, 386
SfaNI	GCATC	1 cut(s)	265
SinI	GGWCC	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
Sse9I	AATT	4 cut(s)	15, 55, 143, 404
SsiI	CCGC	2 cut(s)	252, 388
TaqI	TCGA	3 cut(s)	99, 342, 380
TasI	AATT	4 cut(s)	15, 55, 143, 404
TatI	WGTACW	2 cut(s)	303, 359
TfiI	GAWTC	2 cut(s)	4, 377
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	3 cut(s)	164, 167, 185
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	2 cut(s)	17, 355
Tth111I	GACNNNGTC	1 cut(s)	247
VpaK11BI	GGWCC	1 cut(s)	49
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.