Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005013

Physical Location & Seq

Genomic Coordinates Reverse (-)

1738996 .. 1743264

Gene Structure 4269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG028900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGCTTTGTTATCGTTTTGTTGAGAAAATGGAAATTGTGCATATAATTCCGTTAAGAATGGCAATAACTATGTTAAGTTTGTTGATGTTGGTACAATTGCCAGCAATCCCTGCCTCTGCATTTGTCATACAGTCAAAGGTTTGTAAGGACCAGTTTGCCTATGCGACTTCTAATGGGAAGGACTTGTTTTACATAAATGGGAATTCAGTGGAGAAAGCTTTATTCTGTAATGCTCTTCAAACATACTATGCAAATGGTTGCATTTTGGAGGGGTGCCTTGGAAGCAGCCATTGTGGATCAGTCATTTCACTAGGAAGAAAACTTATGCAAAAGGAGTTTAAGGATGAATCCACTTTCCATCATGGAGAAAACAAGAACGCTTCTAAATCTATGTCCACAACCAAAACAGTTGCAATAGCAGCAAGTGGAGCATTATTGGTGTGTTGTGTTTTCCTTTGTCCCTGCTTTTTTAAGAAAAGGACAGAAGCTGCTCACAATGTTCTTGCTAAGGACACAAATTCAATGGATAATTCAGCTTCTTCTTTTGAAGTGAATCATGCCGCTGAAAAGATACCGGCCAGTCCACTTCGTGTACCACCTAGTCCTAGATATTCAAACTCTCCAAAACTCAGTAGACTTGGGTCTGTACATCTCAATTTGAATCAGATTGCCAGGGCAACCCGCAACTTCTCAAAATCACAACTTATAGGTGAAGGTGGTTTTGGAACTGTCTACAAAGCTCGGCTAGCTGATGGCCAAGTGGTTTCTATAAAACGTGCAAAGAAGGAACTCTTTGAGAATTTGCAAACCGAATTCAGTACCGAAGTTGAACTTCTGGCCAAAATTGATCATCGGAATCTTGTAAAGCTACTAGGTTATGTGGATGAAGGAAATGAACGACTTATCATTACAGAGTATGTGCCGAATGGTAATCTCAGAGAACATCTGGATGGTCAACATGGGAAAACCCTGGAGTTTAATCAGCGACTTGAAATAGCCATTGATGTTGCTCATGCCCTAACTTATCTTCATCTGTACACAGAAAAGCAAATTATCCATCGAGATGTGAAGTCATCCAACATTCTTCTGACAGAAAGCATGCGAGCCAAAGTTGCTGATTTTGGATTTGCCAGGCTTGGTCCGATGGATGCAGATCGAACACACATTTCTACTAAAGTGAAAGGAACCGTTGGCTACCTAGACCCAGAGTACATGAAAACATATCAACTCACCGCCAAAAGTGATGTCTACTCATTTGGGATATTACTTATAGAAATTGTGACTGGTCGTCGTCCAGTGGAGATGAAGAGACCAGTTGAAGAGCGTGTCACTCTCAGATGGGTAAGGATCTTGTATTCCCTTCTCATCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

457

Amino Acids

51.12

Weight (kDa)

9.1

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	231 - 436	1.1e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	233 - 436	2.4e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G11520
fragaria_vesca	FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470 FvH4_1g02470
malus_domestica	MD02G1022200.v1.1 MD15G1164700.v1.1
prunus_persica	Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1 Prupe.7G250000_v2.0.a1
pyrus_communis	pycom02g01910 pycom15g14770
rosa_chinensis	RchiOBHm_Chr2g0087441
rosa_laevigata	RLG00000015869
rosa_multiflora	Rmu_sc0006064.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153530
rosa_rugosa	Rorug01G0475300 Rorug01G0475400 Rorug01G0475500
rosa_samantha	Rh2AG028800 Rh2BG029100 Rh2CG029100 Rh2DG028900
rosa_wichuraiana	Rw2G002300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccI	GTMKAC	3 cut(s)	634, 732, 1248
AciI	CCGC	3 cut(s)	561, 682, 1233
AclWI	GGATC	2 cut(s)	304, 1355
AcoI	YGGCCR	3 cut(s)	576, 754, 837
AcsI	RAATTY	4 cut(s)	202, 517, 799, 812
AdeI	CACNNNGTG	1 cut(s)	590
AfaI	GTAC	6 cut(s)	93, 594, 648, 820, 1037, 1211
AgsI	TTSAA	8 cut(s)	239, 522, 548, 615, 661, 830, 992, 1319
AhdI	GACNNNNNGTC	1 cut(s)	1287
AjnI	CCWGG	3 cut(s)	671, 969, 1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	705, 737
AluBI	AGCT	6 cut(s)	218, 488, 536, 740, 749, 868
AluI	AGCT	6 cut(s)	218, 488, 536, 740, 749, 868
Alw26I	GTCTC	1 cut(s)	1303
AlwI	GGATC	2 cut(s)	304, 1355
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	3 cut(s)	576, 754, 837
ApeKI	GCWGC	3 cut(s)	285, 419, 488
ApoI	RAATTY	4 cut(s)	202, 517, 799, 812
ArsI	GACNNNNNNTTYG	2 cut(s)	1230, 1262
AspS9I	GGNCC	2 cut(s)	148, 1139
AsuHPI	GGTGA	2 cut(s)	722, 1222
AsuNHI	GCTAGC	1 cut(s)	745
AvaII	GGWCC	2 cut(s)	148, 1139
BalI	TGGCCA	2 cut(s)	756, 839
BanI	GGYRCC	1 cut(s)	273
BbvI	GCAGC	3 cut(s)	297, 431, 475
BccI	CCATC	6 cut(s)	366, 746, 944, 1065, 1138, 1332
BciT130I	CCWGG	3 cut(s)	673, 971, 1132
BclI	TGATCA	1 cut(s)	847
BcoDI	GTCTC	1 cut(s)	1303
BfaI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
BisI	GCNGC	4 cut(s)	286, 420, 489, 561
BlsI	GCNGC	4 cut(s)	287, 421, 490, 562
Bme1390I	CCNGG	3 cut(s)	673, 971, 1132
Bme18I	GGWCC	2 cut(s)	148, 1139
BmeRI	GACNNNNNGTC	1 cut(s)	1287
BmgT120I	GGNCC	2 cut(s)	148, 1139
BmiI	GGNNCC	2 cut(s)	275, 1186
BmrFI	CCNGG	3 cut(s)	673, 971, 1132
BmsI	GCATC	1 cut(s)	1138
BmtI	GCTAGC	1 cut(s)	749
BoxI	GACNNNNGTC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	992
Bpu10I	CCTNAGC	1 cut(s)	507
BsaBI	GATNNNNATC	1 cut(s)	1152
BsaI	GGTCTC	1 cut(s)	1303
BsaJI	CCNNGG	3 cut(s)	277, 672, 969
Bse118I	RCCGGY	1 cut(s)	574
Bse1I	ACTGG	5 cut(s)	151, 579, 1288, 1295, 1313
Bse8I	GATNNNNATC	1 cut(s)	1152
BseBI	CCWGG	3 cut(s)	673, 971, 1132
BseDI	CCNNGG	3 cut(s)	277, 672, 969
BseGI	GGATG	6 cut(s)	349, 889, 955, 1073, 1153, 1365
BseJI	GATNNNNATC	1 cut(s)	1152
BseMII	CTCAG	3 cut(s)	643, 949, 1348
BseNI	ACTGG	5 cut(s)	151, 579, 1288, 1295, 1313
BseXI	GCAGC	3 cut(s)	297, 431, 475
BshFI	GGCC	3 cut(s)	578, 756, 839
BshNI	GGYRCC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	1303
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	3 cut(s)	578, 756, 839
Bso31I	GGTCTC	1 cut(s)	1303
Bsp1407I	TGTACA	2 cut(s)	646, 1035
Bsp143I	GATC	4 cut(s)	296, 847, 1153, 1347
BspACI	CCGC	3 cut(s)	561, 682, 1233
BspANI	GGCC	3 cut(s)	578, 756, 839
BspCNI	CTCAG	3 cut(s)	642, 948, 1347
BspLI	GGNNCC	2 cut(s)	275, 1186
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	304, 1355
BspQI	GCTCTTC	2 cut(s)	240, 1314
BspT107I	GGYRCC	1 cut(s)	273
BspTNI	GGTCTC	1 cut(s)	1303
BsrFI	RCCGGY	1 cut(s)	574
BsrGI	TGTACA	2 cut(s)	646, 1035
BsrI	ACTGG	5 cut(s)	151, 579, 1288, 1295, 1313
BssAI	RCCGGY	1 cut(s)	574
BssECI	CCNNGG	3 cut(s)	277, 672, 969
BssMI	GATC	4 cut(s)	296, 847, 1153, 1347
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	3 cut(s)	673, 971, 1132
Bst4CI	ACNGT	4 cut(s)	132, 409, 730, 1189
Bst6I	CTCTTC	3 cut(s)	240, 1301, 1314
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstAUI	TGTACA	2 cut(s)	646, 1035
BstC8I	GCNNGC	4 cut(s)	102, 747, 1100, 1104
BstDEI	CTNAG	4 cut(s)	507, 629, 935, 1334
BstF5I	GGATG	6 cut(s)	349, 889, 955, 1073, 1153, 1365
BstKTI	GATC	4 cut(s)	299, 850, 1156, 1350
BstMAI	GTCTC	1 cut(s)	1303
BstMBI	GATC	4 cut(s)	296, 847, 1153, 1347
BstMWI	GCNNNNNNNGC	6 cut(s)	110, 282, 419, 428, 746, 1112
BstNI	CCWGG	3 cut(s)	673, 971, 1132
BstNSI	RCATGY	1 cut(s)	1102
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	671, 969, 1130
BstV1I	GCAGC	3 cut(s)	297, 431, 475
BstX2I	RGATCY	1 cut(s)	1347
BstYI	RGATCY	1 cut(s)	1347
BsuRI	GGCC	3 cut(s)	578, 756, 839
BtsCI	GGATG	6 cut(s)	349, 889, 955, 1073, 1153, 1365
BtsIMutI	CAGTG	2 cut(s)	213, 1302
Cac8I	GCNNGC	4 cut(s)	102, 747, 1100, 1104
CaiI	CAGNNNCTG	1 cut(s)	488
Cfr10I	RCCGGY	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	148, 1139
Csp6I	GTAC	6 cut(s)	92, 593, 647, 819, 1036, 1210
CviAII	CATG	6 cut(s)	362, 557, 959, 1013, 1099, 1213
CviQI	GTAC	6 cut(s)	92, 593, 647, 819, 1036, 1210
DdeI	CTNAG	4 cut(s)	507, 629, 935, 1334
DpnI	GATC	4 cut(s)	298, 849, 1155, 1349
DpnII	GATC	4 cut(s)	296, 847, 1153, 1347
DraIII	CACNNNGTG	1 cut(s)	590
DriI	GACNNNNNGTC	1 cut(s)	1287
EaeI	YGGCCR	3 cut(s)	576, 754, 837
Eam1104I	CTCTTC	3 cut(s)	240, 1301, 1314
Eam1105I	GACNNNNNGTC	1 cut(s)	1287
EarI	CTCTTC	3 cut(s)	240, 1301, 1314
Eco130I	CCWWGG	1 cut(s)	277
Eco31I	GGTCTC	1 cut(s)	1303
Eco47I	GGWCC	2 cut(s)	148, 1139
EcoRI	GAATTC	2 cut(s)	202, 812
EcoRII	CCWGG	3 cut(s)	671, 969, 1130
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	365, 560, 962, 1016, 1102, 1216
FalI	AAGNNNNNCTT	4 cut(s)	776, 808, 816, 848
FaqI	GGGAC	1 cut(s)	444
FatI	CATG	6 cut(s)	361, 556, 958, 1012, 1098, 1212
FauI	CCCGC	1 cut(s)	689
FbaI	TGATCA	1 cut(s)	847
FblI	GTMKAC	3 cut(s)	634, 732, 1248
Fnu4HI	GCNGC	4 cut(s)	286, 420, 489, 561
FokI	GGATG	6 cut(s)	356, 896, 962, 1060, 1160, 1352
Fsp4HI	GCNGC	4 cut(s)	286, 420, 489, 561
FspBI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
GluI	GCNGC	4 cut(s)	286, 420, 489, 561
GsuI	CTGGAG	1 cut(s)	992
HaeIII	GGCC	3 cut(s)	578, 756, 839
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	6 cut(s)	365, 560, 962, 1016, 1102, 1216
HincII	GTYRAC	1 cut(s)	956
HindII	GTYRAC	1 cut(s)	956
HindIII	AAGCTT	1 cut(s)	216
HinfI	GANTC	4 cut(s)	347, 553, 661, 856
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	2 cut(s)	722, 1222
Hpy166II	GTNNAC	8 cut(s)	396, 584, 593, 635, 733, 956, 1038, 1249
Hpy188I	TCNGA	6 cut(s)	666, 855, 938, 1089, 1143, 1337
Hpy188III	TCNNGA	2 cut(s)	947, 1061
Hpy8I	GTNNAC	8 cut(s)	396, 584, 593, 635, 733, 956, 1038, 1249
Hpy99I	CGWCG	1 cut(s)	1293
HpyAV	CCTTC	5 cut(s)	172, 707, 778, 881, 1370
HpyCH4III	ACNGT	4 cut(s)	132, 409, 730, 1189
HpyCH4IV	ACGT	1 cut(s)	775
HpyCH4V	TGCA	9 cut(s)	40, 119, 251, 261, 328, 413, 779, 805, 1151
HpyF10VI	GCNNNNNNNGC	6 cut(s)	110, 282, 419, 428, 746, 1112
HpyF3I	CTNAG	4 cut(s)	507, 629, 935, 1334
HpySE526I	ACGT	1 cut(s)	775
Hsp92II	CATG	6 cut(s)	365, 560, 962, 1016, 1102, 1216
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	296, 847, 1153, 1347
LguI	GCTCTTC	2 cut(s)	240, 1314
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	3 cut(s)	297, 431, 475
LweI	GCATC	1 cut(s)	1138
MaeI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	2 cut(s)	1279, 1327
MalI	GATC	4 cut(s)	298, 849, 1155, 1349
MboI	GATC	4 cut(s)	296, 847, 1153, 1347
MboII	GAAGA	7 cut(s)	227, 327, 531, 1019, 1076, 1318, 1331
MfeI	CAATTG	1 cut(s)	95
MflI	RGATCY	1 cut(s)	1347
MlsI	TGGCCA	2 cut(s)	756, 839
MluNI	TGGCCA	2 cut(s)	756, 839
MmeI	TCCRAC	1 cut(s)	1101
MnlI	CCTC	2 cut(s)	124, 262
Mox20I	TGGCCA	2 cut(s)	756, 839
MscI	TGGCCA	2 cut(s)	756, 839
MseI	TTAA	5 cut(s)	53, 74, 339, 471, 978
MslI	CAYNNNNRTG	2 cut(s)	948, 1062
Msp20I	TGGCCA	2 cut(s)	756, 839
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	3 cut(s)	673, 971, 1132
MunI	CAATTG	1 cut(s)	95
MvaI	CCWGG	3 cut(s)	673, 971, 1132
MwoI	GCNNNNNNNGC	6 cut(s)	110, 282, 419, 428, 746, 1112
NdeII	GATC	4 cut(s)	296, 847, 1153, 1347
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	6 cut(s)	365, 560, 962, 1016, 1102, 1216
NlaIV	GGNNCC	2 cut(s)	275, 1186
NmeAIII	GCCGAG	1 cut(s)	721
NmuCI	GTSAC	2 cut(s)	1279, 1327
NspI	RCATGY	1 cut(s)	1102
PaeI	GCATGC	1 cut(s)	1102
PciSI	GCTCTTC	2 cut(s)	240, 1314
PfeI	GAWTC	4 cut(s)	347, 553, 661, 856
PkrI	GCNGC	4 cut(s)	287, 421, 490, 562
PshAI	GACNNNNGTC	1 cut(s)	640
Psp6I	CCWGG	3 cut(s)	671, 969, 1130
PspGI	CCWGG	3 cut(s)	671, 969, 1130
PspN4I	GGNNCC	2 cut(s)	275, 1186
PspPI	GGNCC	2 cut(s)	148, 1139
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	1 cut(s)	1347
RsaI	GTAC	6 cut(s)	93, 594, 648, 820, 1037, 1211
RsaNI	GTAC	6 cut(s)	92, 593, 647, 819, 1036, 1210
RseI	CAYNNNNRTG	2 cut(s)	948, 1062
SapI	GCTCTTC	2 cut(s)	240, 1314
SaqAI	TTAA	5 cut(s)	53, 74, 339, 471, 978
SatI	GCNGC	4 cut(s)	286, 420, 489, 561
Sau3AI	GATC	4 cut(s)	296, 847, 1153, 1347
Sau96I	GGNCC	2 cut(s)	148, 1139
ScrFI	CCNGG	3 cut(s)	673, 971, 1132
SfaNI	GCATC	1 cut(s)	1138
SinI	GGWCC	2 cut(s)	148, 1139
SmiMI	CAYNNNNRTG	2 cut(s)	948, 1062
SphI	GCATGC	1 cut(s)	1102
SsiI	CCGC	3 cut(s)	561, 682, 1233
SspMI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199
StyD4I	CCNGG	3 cut(s)	671, 969, 1130
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	4 cut(s)	132, 409, 730, 1189
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	2 cut(s)	1060, 1156
TatI	WGTACW	3 cut(s)	646, 1035, 1209
TauI	GCSGC	1 cut(s)	563
TfiI	GAWTC	4 cut(s)	347, 553, 661, 856
Tru1I	TTAA	5 cut(s)	53, 74, 339, 471, 978
Tru9I	TTAA	5 cut(s)	53, 74, 339, 471, 978
TscAI	CASTG	2 cut(s)	213, 1302
TseFI	GTSAC	2 cut(s)	1279, 1327
TseI	GCWGC	3 cut(s)	285, 419, 488
Tsp45I	GTSAC	2 cut(s)	1279, 1327
TspDTI	ATGAA	6 cut(s)	360, 900, 909, 1019, 1229, 1319
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	2 cut(s)	213, 1302
VpaK11BI	GGWCC	2 cut(s)	148, 1139
XapI	RAATTY	4 cut(s)	202, 517, 799, 812
XceI	RCATGY	1 cut(s)	1102
XmiI	GTMKAC	3 cut(s)	634, 732, 1248
XspI	CTAG	6 cut(s)	311, 600, 606, 746, 872, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.