Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

18545997 .. 18547201

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23893.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGGAAAGAAAGTCGGAGCTGGTCCATTCCGAAGGTCGAGGATGAAGATTGGGAGCAAACAATTGTTTCGTTCCAAGACTTGAACTTGGAGTCCTTTTCCCGTGCCCTCCCCGAGAGGCTGCCGGCTGTGTCGAACAAGGATTTATTGGCGAAAATCCGGGTGCAGCAGAGAGAATGTGATGAGGGTACACTTAAGTTGGTTGATCATAGAAGTAAAAACGTTCAGTTTGACGAGGATTTGCTCTGTTACTCTCTCAAAACCACAGACTTTATCTGCAAGCCACAGGAAGAGACCGTGAAAGCCTACAAGCGAGCTCTCCAAATTGTTGCAAACATGCTTGAAGAGGGCTTGATGAACACCACTAGAGGTATGTTCTACACAGCTGAGGACGTTTACGGATCACAAAAACGCTCTGATTTTATCATCAGGCACTTAGCCTCTAAACTAGAGGTGGATCGTGCCCAATTGAATGTCTTTCCAGGGGATGCGGGTTCAGTGATCGGTCCCCTGAGCTATACTCTCCACGACGTAATGCATGTGGACTGCAACTTGGAATTACATGATGCCGTCCAACCAAAGCATGGTGTCCCTGTTCCGAATAATATGCGAACGATTAGTAAGATGGAAGGCACCAGCGTCAAGTTTATCTTGTTAGTAGAGAGTCTTGCGGTTTACTCTATATTGGCTACAGCCAACTTTCACAATCGTTATCGATGTTTATTAATGACGGGGAGGGGAATGCCCGATGTGAATGTAAGAGAGTTTAGCAGGTATGTATCACAGAAGCTTGGAGTTGCCCTGTTTTATCTGTCGGACTGCGATCCTAATGGAATTGAGATATACACGGTCTACAAGTACGGGTCGGCCAATATGGCTTTTGATTCCAAGCATTTGGCTAACCCGAATTTGATTTGGCTCGGTGTTTGGCCTTCCGACCTGAGCAAATATGAAATTCCATCGGTAAAGATGACTGACAACGAGGTACACAAAGCAAATCAATTGTTAAAAAAGGAATTCGTAAAGAGGGATAATAGGTTGGGGGAGGAGGTGAGGCACATGGTGAGTAGCAAGCAGAAGACTACTATCTGCGTGTTGAATTGTGAAAGTGCCAGTGGAGTATCAGAGTTCGTGCTACTCAAGTTGAAGCAGGTGATGGATGAGATGTTGATTTTGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

395

Amino Acids

45.01

Weight (kDa)

6.4

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TP6A_N	PF04406	105 - 159	2.3e-10	Type IIB DNA topoisomerase
TOP6A-Spo11_Toprim	PF21180	216 - 375	1.7e-42	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1141
Acc36I	ACCTGC	2 cut(s)	762, 1141
AccB1I	GGYRCC	1 cut(s)	632
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	852
AciI	CCGC	2 cut(s)	491, 671
AclI	AACGTT	1 cut(s)	222
AclWI	GGATC	3 cut(s)	409, 465, 818
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	3 cut(s)	907, 954, 1016
AdeI	CACNNNGTG	1 cut(s)	1063
AfaI	GTAC	3 cut(s)	190, 860, 987
AfiI	CCNNNNNNNGG	1 cut(s)	584
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	5 cut(s)	85, 344, 472, 1099, 1147
AjnI	CCWGG	1 cut(s)	481
AloI	GAACNNNNNNTCC	2 cut(s)	77, 109
AluBI	AGCT	5 cut(s)	21, 317, 386, 516, 790
AluI	AGCT	5 cut(s)	21, 317, 386, 516, 790
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	3 cut(s)	409, 465, 818
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	2 cut(s)	867, 929
ApeKI	GCWGC	2 cut(s)	121, 166
ApoI	RAATTY	3 cut(s)	907, 954, 1016
AseI	ATTAAT	1 cut(s)	725
AspS9I	GGNCC	2 cut(s)	24, 506
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	3 cut(s)	1063, 1075, 1165
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	2 cut(s)	24, 506
BaeGI	GKGCMC	2 cut(s)	109, 466
BanI	GGYRCC	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	1085
Bbv12I	GWGCWC	1 cut(s)	319
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	2 cut(s)	108, 178
BccI	CCATC	3 cut(s)	619, 967, 1150
BceAI	ACGGC	1 cut(s)	554
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	1 cut(s)	483
BclI	TGATCA	1 cut(s)	205
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	366, 449
BfmI	CTRYAG	1 cut(s)	690
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	2 cut(s)	762, 1141
BglI	GCCNNNNNGGC	1 cut(s)	875
BisI	GCNGC	2 cut(s)	122, 167
BlsI	GCNGC	2 cut(s)	123, 168
Bme1390I	CCNGG	2 cut(s)	161, 483
Bme18I	GGWCC	2 cut(s)	24, 506
BmeT110I	CYCGRG	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	24, 506
BmiI	GGNNCC	2 cut(s)	508, 634
BmrFI	CCNGG	2 cut(s)	161, 483
BmsI	GCATC	2 cut(s)	478, 556
BpiI	GAAGAC	1 cut(s)	1085
BplI	GAGNNNNNCTC	2 cut(s)	505, 537
Bpu10I	CCTNAGC	3 cut(s)	387, 512, 941
BpuEI	CTTGAG	1 cut(s)	1124
BpuMI	CCSGG	1 cut(s)	161
Bsa29I	ATCGAT	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	3 cut(s)	49, 493, 1165
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	3 cut(s)	378, 503, 932
BseNI	ACTGG	1 cut(s)	1113
BseRI	GAGGAG	1 cut(s)	1061
BseSI	GKGCMC	2 cut(s)	109, 466
BseXI	GCAGC	2 cut(s)	108, 178
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	2 cut(s)	869, 931
BshNI	GGYRCC	1 cut(s)	632
BshVI	ATCGAT	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	125, 160
BslFI	GGGAC	2 cut(s)	492, 575
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	1 cut(s)	287
BsmFI	GGGAC	2 cut(s)	492, 575
BsmI	GAATGC	1 cut(s)	747
BsnI	GGCC	2 cut(s)	869, 931
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	3 cut(s)	109, 319, 466
Bsp143I	GATC	5 cut(s)	205, 401, 457, 501, 823
BspACI	CCGC	2 cut(s)	491, 671
BspANI	GGCC	2 cut(s)	869, 931
BspCNI	CTCAG	3 cut(s)	379, 504, 933
BspDI	ATCGAT	1 cut(s)	715
BspLI	GGNNCC	2 cut(s)	508, 634
BspMI	ACCTGC	2 cut(s)	762, 1141
BspPI	GGATC	3 cut(s)	409, 465, 818
BspT107I	GGYRCC	1 cut(s)	632
BspTI	CTTAAG	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	1113
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	5 cut(s)	205, 401, 457, 501, 823
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	2 cut(s)	298, 850
Bst6I	CTCTTC	2 cut(s)	285, 339
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	4 cut(s)	126, 281, 315, 1073
BstDEI	CTNAG	4 cut(s)	387, 436, 512, 941
BstF5I	GGATG	3 cut(s)	49, 493, 1165
BstKTI	GATC	5 cut(s)	208, 404, 460, 504, 826
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	5 cut(s)	205, 401, 457, 501, 823
BstMWI	GCNNNNNNNGC	1 cut(s)	875
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	2 cut(s)	340, 542
BstSCI	CCNGG	2 cut(s)	159, 481
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	2 cut(s)	109, 466
BstV1I	GCAGC	2 cut(s)	108, 178
BstV2I	GAAGAC	1 cut(s)	1085
BstXI	CCANNNNNNTGG	1 cut(s)	895
Bsu15I	ATCGAT	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	869, 931
BsuTUI	ATCGAT	1 cut(s)	715
BtsCI	GGATG	3 cut(s)	49, 493, 1165
BtsIMutI	CAGTG	2 cut(s)	504, 1120
BveI	ACCTGC	2 cut(s)	762, 1141
Cac8I	GCNNGC	4 cut(s)	126, 281, 315, 1073
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	24, 506
ClaI	ATCGAT	1 cut(s)	715
CseI	GACGC	1 cut(s)	628
Csp6I	GTAC	3 cut(s)	189, 859, 986
CviAII	CATG	5 cut(s)	337, 539, 563, 584, 1060
CviQI	GTAC	3 cut(s)	189, 859, 986
DdeI	CTNAG	4 cut(s)	387, 436, 512, 941
DpnI	GATC	5 cut(s)	207, 403, 459, 503, 825
DpnII	GATC	5 cut(s)	205, 401, 457, 501, 823
DraIII	CACNNNGTG	1 cut(s)	1063
EaeI	YGGCCR	1 cut(s)	867
Eam1104I	CTCTTC	2 cut(s)	285, 339
EarI	CTCTTC	2 cut(s)	285, 339
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	287
Eco47I	GGWCC	2 cut(s)	24, 506
Eco53kI	GAGCTC	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	113
EcoICRI	GAGCTC	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	1016
EcoRII	CCWGG	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	540
EcoT38I	GRGCYC	1 cut(s)	319
FaeI	CATG	5 cut(s)	340, 542, 566, 587, 1063
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	2 cut(s)	492, 575
FatI	CATG	5 cut(s)	336, 538, 562, 583, 1059
FauI	CCCGC	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	205
FblI	GTMKAC	1 cut(s)	852
Fnu4HI	GCNGC	2 cut(s)	122, 167
FokI	GGATG	3 cut(s)	56, 500, 1172
FriOI	GRGCYC	1 cut(s)	319
Fsp4HI	GCNGC	2 cut(s)	122, 167
FspBI	CTAG	2 cut(s)	366, 449
GluI	GCNGC	2 cut(s)	122, 167
HaeIII	GGCC	2 cut(s)	869, 931
HapII	CCGG	2 cut(s)	125, 160
HgaI	GACGC	1 cut(s)	628
Hin1II	CATG	5 cut(s)	340, 542, 566, 587, 1063
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	3 cut(s)	92, 664, 884
HpaII	CCGG	2 cut(s)	125, 160
HphI	GGTGA	3 cut(s)	1063, 1075, 1165
Hpy166II	GTNNAC	6 cut(s)	191, 397, 544, 676, 853, 988
Hpy188I	TCNGA	7 cut(s)	18, 33, 418, 600, 817, 937, 1126
Hpy8I	GTNNAC	6 cut(s)	191, 397, 544, 676, 853, 988
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	3 cut(s)	28, 623, 942
HpyCH4III	ACNGT	2 cut(s)	298, 850
HpyCH4IV	ACGT	3 cut(s)	222, 393, 531
HpyCH4V	TGCA	5 cut(s)	166, 279, 332, 538, 549
HpyF10VI	GCNNNNNNNGC	1 cut(s)	875
HpyF3I	CTNAG	4 cut(s)	387, 436, 512, 941
HpySE526I	ACGT	3 cut(s)	222, 393, 531
Hsp92II	CATG	5 cut(s)	340, 542, 566, 587, 1063
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	205
Kzo9I	GATC	5 cut(s)	205, 401, 457, 501, 823
LmnI	GCTCC	2 cut(s)	18, 55
Lsp1109I	GCAGC	2 cut(s)	108, 178
LweI	GCATC	2 cut(s)	478, 556
MaeI	CTAG	2 cut(s)	366, 449
MaeII	ACGT	3 cut(s)	222, 393, 531
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	5 cut(s)	207, 403, 459, 503, 825
MboI	GATC	5 cut(s)	205, 401, 457, 501, 823
MboII	GAAGA	4 cut(s)	59, 302, 356, 1090
MfeI	CAATTG	3 cut(s)	63, 467, 1001
MhlI	GDGCHC	3 cut(s)	109, 319, 466
MlyI	GAGTC	2 cut(s)	101, 673
MmeI	TCCRAC	3 cut(s)	598, 795, 960
Mph1103I	ATGCAT	1 cut(s)	540
MroNI	GCCGGC	1 cut(s)	124
MseI	TTAA	3 cut(s)	195, 725, 1007
MspA1I	CMGCKG	1 cut(s)	386
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	2 cut(s)	125, 160
MspR9I	CCNGG	2 cut(s)	161, 483
MunI	CAATTG	3 cut(s)	63, 467, 1001
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	875
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	5 cut(s)	205, 401, 457, 501, 823
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	5 cut(s)	340, 542, 566, 587, 1063
NlaIV	GGNNCC	2 cut(s)	508, 634
NsiI	ATGCAT	1 cut(s)	540
NspI	RCATGY	2 cut(s)	340, 542
PaqCI	CACCTGC	1 cut(s)	1141
PctI	GAATGC	1 cut(s)	747
PdiI	GCCGGC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	584
PkrI	GCNGC	2 cut(s)	123, 168
PleI	GAGTC	2 cut(s)	100, 672
PpsI	GAGTC	2 cut(s)	100, 672
PshBI	ATTAAT	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	319
Psp1406I	AACGTT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	508, 634
PspPI	GGNCC	2 cut(s)	24, 506
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	3 cut(s)	190, 860, 987
RsaNI	GTAC	3 cut(s)	189, 859, 986
SacI	GAGCTC	1 cut(s)	319
SaqAI	TTAA	3 cut(s)	195, 725, 1007
SatI	GCNGC	2 cut(s)	122, 167
Sau3AI	GATC	5 cut(s)	205, 401, 457, 501, 823
Sau96I	GGNCC	2 cut(s)	24, 506
SchI	GAGTC	2 cut(s)	101, 673
ScrFI	CCNGG	2 cut(s)	161, 483
SduI	GDGCHC	3 cut(s)	109, 319, 466
SfaNI	GCATC	2 cut(s)	478, 556
SfcI	CTRYAG	1 cut(s)	690
SinI	GGWCC	2 cut(s)	24, 506
SmlI	CTYRAG	2 cut(s)	194, 1139
SmoI	CTYRAG	2 cut(s)	194, 1139
SsiI	CCGC	2 cut(s)	491, 671
SspMI	CTAG	2 cut(s)	366, 449
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	159, 481
TaaI	ACNGT	2 cut(s)	298, 850
TaiI	ACGT	3 cut(s)	225, 396, 534
TaqI	TCGA	3 cut(s)	39, 134, 715
TaqII	GACCGA	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	884
Tru1I	TTAA	3 cut(s)	195, 725, 1007
Tru9I	TTAA	3 cut(s)	195, 725, 1007
TscAI	CASTG	2 cut(s)	504, 1120
TseI	GCWGC	2 cut(s)	121, 166
TspDTI	ATGAA	3 cut(s)	60, 371, 966
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	2 cut(s)	504, 1120
Van91I	CCANNNNNTGG	1 cut(s)	584
Vha464I	CTTAAG	1 cut(s)	194
VpaK11BI	GGWCC	2 cut(s)	24, 506
VspI	ATTAAT	1 cut(s)	725
XapI	RAATTY	3 cut(s)	907, 954, 1016
XceI	RCATGY	2 cut(s)	340, 542
XcmI	CCANNNNNNNNNTGG	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	852
XspI	CTAG	2 cut(s)	366, 449
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.