Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Reverse (-)

1895075 .. 1895482

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG028800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATGATTTCAAGCTACCAGCGTTCTGCCTTGTAGATTGTGATCCATGGGGCATTGAGATTTCAGCTATTATCAGGCACGGCTCGGTGAATATGGCGTATGACAGTAAAAATTTAGCCAGCCCCTTGATGTATTGGTTAGGTATTTGGCCAAGTGATTTGGAAAATCTTAATATACCTTTAGAGAAGTTCACTATGACCGATTTGAAGAAATTAGAGGATTTGATGGAGAAAGAATTTTTTGATGACGATAAGACGTTGAAAAAGGAGCTGAATTATATGACTCTACACCAAAAGAAGGTAGAGCTTGAAGCTTTGAGTGCTCTTGGGACTTATTGCCTACATAGAGATTATTTGCCGTATAAACTGTGCCTTGTGATGGACCAAATTATGGAAGGTAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000707 GO:0000724 GO:0000725 GO:0000729 GO:0000730 GO:0000781 GO:0001541 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007130 GO:0007131 GO:0007140 GO:0007141 GO:0007146 GO:0007275 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007548 GO:0008094 GO:0008104 GO:0008150 GO:0008152 GO:0008406 GO:0008585 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016888 GO:0016889 GO:0016893 GO:0016894 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0030154 GO:0030717 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0033365 GO:0033554 GO:0034397 GO:0034502 GO:0034613 GO:0034622 GO:0034641 GO:0035825 GO:0042138 GO:0042139 GO:0042140 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045003 GO:0045132 GO:0045137 GO:0045141 GO:0045143 GO:0046483 GO:0046545 GO:0046660 GO:0048232 GO:0048285 GO:0048468 GO:0048477 GO:0048513 GO:0048515 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0048869 GO:0050000 GO:0050896 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051321 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0051716 GO:0061458 GO:0061505 GO:0061982 GO:0061988 GO:0065003 GO:0065004 GO:0070013 GO:0070192 GO:0070193 GO:0070727 GO:0071704 GO:0071824 GO:0071840 GO:0090220 GO:0090304 GO:0090305 GO:0090735 GO:0097159 GO:0098687 GO:0098813 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046 GO:1990918

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

SPO11_like TP6A_N

Protein Analysis

135

Amino Acids

15.84

Weight (kDa)

4.79

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	2 - 123	9e-35	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AclWI	GGATC	1 cut(s)	38
AcoI	YGGCCR	1 cut(s)	149
AcsI	RAATTY	2 cut(s)	112, 236
AfiI	CCNNNNNNNGG	3 cut(s)	298, 379, 391
AgsI	TTSAA	4 cut(s)	13, 208, 262, 311
AluBI	AGCT	5 cut(s)	16, 68, 271, 307, 314
AluI	AGCT	5 cut(s)	16, 68, 271, 307, 314
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	38
AoxI	GGCC	1 cut(s)	149
ApoI	RAATTY	2 cut(s)	112, 236
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	382
BalI	TGGCCA	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	325
BccI	CCATC	2 cut(s)	220, 373
BceAI	ACGGC	2 cut(s)	97, 343
Bme18I	GGWCC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 379, 391
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	3 cut(s)	298, 379, 391
BshFI	GGCC	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	325
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	3 cut(s)	298, 379, 391
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	151
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	1 cut(s)	43
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	1 cut(s)	43
BssT1I	CCWWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	107, 369
BstC8I	GCNNGC	1 cut(s)	121
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	382
CviAII	CATG	1 cut(s)	48
CviJI	RGCY	9 cut(s)	16, 68, 84, 119, 123, 151, 271, 307, 314
CviKI_1	RGCY	9 cut(s)	16, 68, 84, 119, 123, 151, 271, 307, 314
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
EaeI	YGGCCR	1 cut(s)	149
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	1 cut(s)	51
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	47
FokI	GGATG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	151
Hin1II	CATG	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	312
HinfI	GANTC	1 cut(s)	283
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	192
Hpy8I	GTNNAC	1 cut(s)	192
HpyAV	CCTTC	2 cut(s)	292, 389
HpyCH4III	ACNGT	2 cut(s)	107, 369
HpyCH4IV	ACGT	1 cut(s)	257
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	3 cut(s)	33, 61, 133
MaeII	ACGT	1 cut(s)	257
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	1 cut(s)	220
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	151
MluCI	AATT	5 cut(s)	112, 212, 236, 274, 387
MluNI	TGGCCA	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	1 cut(s)	211
Mox20I	TGGCCA	1 cut(s)	151
MscI	TGGCCA	1 cut(s)	151
MseI	TTAA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	151
MwoI	GCNNNNNNNGC	1 cut(s)	320
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	51
PflMI	CCANNNNNTGG	1 cut(s)	391
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	382
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	325
SinI	GGWCC	1 cut(s)	382
Sse9I	AATT	5 cut(s)	112, 212, 236, 274, 387
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	2 cut(s)	107, 369
TaiI	ACGT	1 cut(s)	260
TaqII	GACCGA	1 cut(s)	215
TasI	AATT	5 cut(s)	112, 212, 236, 274, 387
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	112, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.