Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017669.1

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

54086 .. 55330

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017669.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

atggccaacagcaacaaccagagctcctcaagctcccatggtaaaatcctatacaaaattccttcttgggtcacaccggatgagaaggagtttcacaatagaacaatggagttccttgcgtggtaccggaagtctaaccgcaccttgccttctccctccaataaatgcatgaaggtcaaagatatgtctcgcgaagaagtattggagaaaattagggaggagaagaaacgtattgaagatgattgttcctttgagttggttgatcaatcagcctccaacaaaatgttcgatgacggtgcccaacgtttagttctaaaagacggcaaaaaactttacaagccgcaaaaagctacaaaagaagcctatggtcgtgttctaaatgttgttaatgatatatgtgagcacaagaagtcccgcaccctccgtgatatcttttacacggctcccaaacttttccgcaagcaatctaggtctaacaaagccgttaatcaactcagttgtgaagtaggttgcactcgtaccagcctcaatgtcattgcaggagatagaggctttgtcataggtccttttactttcaagctagacggaagatcggtcgattgtaacagtgaatttggtccagataatagggttagggttggacaagtcgttccgccttatataagttctgttagtgatatgaagaacaatggtgcaaggttcgtgttagtagtggaaagtgtatctgcttatcaaagattgacgggggacaactttcataatgattataagtgtataatcatgaccggaaaaggcatgtctgatctagcacttagagaattcgcaaagtatataatggacacattcgagattccaatatttctcctctcagattctgatccatggggcatcgaaatttatgcagtctttaaatatggctcagaaagtatggcatttgatagtgaaaatttggctaacccattggtacattggctgggtgtctggccaaccgacttaaccacacttaaaataccatccgagaagttgagttgcgatgacctgagaaaagcaagaaaattgttgaagaaggagtttgtaacaagtgatgagatgctggtgaaccagctggaccacatgatcatgcacaaagaaaaggcaggcattttagctctaaataatttcgggccgctctatggtctatctgattacttgctgtacaagttgtacaaggtgatgggtgatatcatgaaaaaagggcaattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

414

Amino Acids

47.31

Weight (kDa)

8.93

Isoelectric Point (pI)

39.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	123, 296
AccBSI	CCGCTC	1 cut(s)	1168
AccII	CGCG	1 cut(s)	192
AciI	CCGC	6 cut(s)	139, 341, 415, 457, 653, 1166
AclI	AACGTT	1 cut(s)	304
AclWI	GGATC	1 cut(s)	872
AcoI	YGGCCR	2 cut(s)	3, 983
AcsI	RAATTY	5 cut(s)	57, 611, 818, 894, 946
AfaI	GTAC	5 cut(s)	125, 520, 966, 1196, 1205
AfiI	CCNNNNNNNGG	1 cut(s)	1172
AgsI	TTSAA	3 cut(s)	236, 577, 1063
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 294, 301, 326
AloI	GAACNNNNNNTCC	2 cut(s)	633, 665
AluBI	AGCT	6 cut(s)	24, 33, 350, 580, 1105, 1148
AluI	AGCT	6 cut(s)	24, 33, 350, 580, 1105, 1148
Alw21I	GWGCWC	2 cut(s)	26, 405
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	872
AlwNI	CAGNNNCTG	1 cut(s)	875
AoxI	GGCC	3 cut(s)	3, 983, 1163
ApoI	RAATTY	5 cut(s)	57, 611, 818, 894, 946
Asp718I	GGTACC	1 cut(s)	123
AspS9I	GGNCC	4 cut(s)	563, 617, 1108, 1163
AsuHPI	GGTGA	3 cut(s)	1108, 1222, 1229
AvaII	GGWCC	3 cut(s)	563, 617, 1108
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	2 cut(s)	5, 985
BanI	GGYRCC	2 cut(s)	123, 296
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	2 cut(s)	26, 405
BccI	CCATC	2 cut(s)	1021, 1207
BceAI	ACGGC	3 cut(s)	337, 456, 467
BcgI	CGANNNNNNTGC	4 cut(s)	278, 312, 881, 915
BclI	TGATCA	2 cut(s)	262, 1116
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	3 cut(s)	468, 581, 806
BisI	GCNGC	2 cut(s)	341, 1166
BlsI	GCNGC	2 cut(s)	342, 1167
Bme18I	GGWCC	3 cut(s)	563, 617, 1108
BmgT120I	GGNCC	4 cut(s)	563, 617, 1108, 1163
BmiI	GGNNCC	3 cut(s)	125, 298, 444
BmsI	GCATC	2 cut(s)	897, 1080
BpuEI	CTTGAG	1 cut(s)	13
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	37, 881
BsaWI	WCCGGW	3 cut(s)	76, 126, 785
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	1172
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	876
BseDI	CCNNGG	2 cut(s)	37, 881
BseGI	GGATG	2 cut(s)	85, 1013
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	1 cut(s)	1172
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	4 cut(s)	508, 882, 933, 1031
BseRI	GAGGAG	3 cut(s)	16, 233, 854
BseSI	GKGCMC	1 cut(s)	301
BseYI	CCCAGC	1 cut(s)	973
Bsh1236I	CGCG	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	3 cut(s)	5, 985, 1165
BshNI	GGYRCC	2 cut(s)	123, 296
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	26, 405
BsiSI	CCGG	3 cut(s)	77, 127, 786
BslFI	GGGAC	2 cut(s)	397, 761
BslI	CCNNNNNNNGG	1 cut(s)	1172
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	2 cut(s)	397, 761
BsnI	GGCC	3 cut(s)	5, 985, 1165
Bsp1286I	GDGCHC	3 cut(s)	26, 301, 405
Bsp1407I	TGTACA	2 cut(s)	1194, 1203
Bsp143I	GATC	5 cut(s)	262, 590, 802, 877, 1116
Bsp19I	CCATGG	2 cut(s)	37, 881
Bsp68I	TCGCGA	1 cut(s)	192
BspACI	CCGC	6 cut(s)	139, 341, 415, 457, 653, 1166
BspANI	GGCC	3 cut(s)	5, 985, 1165
BspCNI	CTCAG	4 cut(s)	507, 881, 932, 1032
BspFNI	CGCG	1 cut(s)	192
BspHI	TCATGA	2 cut(s)	780, 1224
BspLI	GGNNCC	3 cut(s)	125, 298, 444
BspPI	GGATC	1 cut(s)	872
BspT107I	GGYRCC	2 cut(s)	123, 296
BsrBI	CCGCTC	1 cut(s)	1168
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	2 cut(s)	1194, 1203
BssECI	CCNNGG	2 cut(s)	37, 881
BssMI	GATC	5 cut(s)	262, 590, 802, 877, 1116
BssT1I	CCWWGG	2 cut(s)	37, 881
Bst4CI	ACNGT	2 cut(s)	296, 608
BstAUI	TGTACA	2 cut(s)	1194, 1203
BstC8I	GCNNGC	2 cut(s)	461, 1138
BstDEI	CTNAG	5 cut(s)	494, 812, 868, 919, 1040
BstDSI	CCRYGG	2 cut(s)	37, 881
BstF5I	GGATG	2 cut(s)	85, 1013
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	5 cut(s)	265, 593, 805, 880, 1119
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	5 cut(s)	262, 590, 802, 877, 1116
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	799
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	5, 985, 1165
BtgI	CCRYGG	2 cut(s)	37, 881
BtgZI	GCGATG	1 cut(s)	1047
BtsCI	GGATG	2 cut(s)	85, 1013
BtsIMutI	CAGTG	1 cut(s)	613
BtuMI	TCGCGA	1 cut(s)	192
Cac8I	GCNNGC	2 cut(s)	461, 1138
CaiI	CAGNNNCTG	1 cut(s)	875
CciI	TCATGA	2 cut(s)	780, 1224
Cfr13I	GGNCC	4 cut(s)	563, 617, 1108, 1163
Csp6I	GTAC	5 cut(s)	124, 519, 965, 1195, 1204
CviAII	CATG	8 cut(s)	38, 169, 781, 796, 882, 1114, 1120, 1225
CviQI	GTAC	5 cut(s)	124, 519, 965, 1195, 1204
DdeI	CTNAG	5 cut(s)	494, 812, 868, 919, 1040
DpnI	GATC	5 cut(s)	264, 592, 804, 879, 1118
DpnII	GATC	5 cut(s)	262, 590, 802, 877, 1116
DraI	TTTAAA	1 cut(s)	910
EaeI	YGGCCR	2 cut(s)	3, 983
EciI	GGCGGA	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	37, 881
Eco24I	GRGCYC	1 cut(s)	26
Eco32I	GATATC	2 cut(s)	430, 1222
Eco47I	GGWCC	3 cut(s)	563, 617, 1108
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	818
EcoRV	GATATC	2 cut(s)	430, 1222
EcoT14I	CCWWGG	2 cut(s)	37, 881
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	37, 881
FaeI	CATG	8 cut(s)	41, 172, 784, 799, 885, 1117, 1123, 1228
FaqI	GGGAC	2 cut(s)	397, 761
FatI	CATG	8 cut(s)	37, 168, 780, 795, 881, 1113, 1119, 1224
FauI	CCCGC	1 cut(s)	422
FbaI	TGATCA	2 cut(s)	262, 1116
Fnu4HI	GCNGC	2 cut(s)	341, 1166
FokI	GGATG	2 cut(s)	92, 1000
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	2 cut(s)	341, 1166
FspBI	CTAG	3 cut(s)	468, 581, 806
GluI	GCNGC	2 cut(s)	341, 1166
GsaI	CCCAGC	1 cut(s)	977
HaeIII	GGCC	3 cut(s)	5, 985, 1165
HapII	CCGG	3 cut(s)	77, 127, 786
Hin1II	CATG	8 cut(s)	41, 172, 784, 799, 885, 1117, 1123, 1228
HinfI	GANTC	2 cut(s)	850, 872
HpaII	CCGG	3 cut(s)	77, 127, 786
HphI	GGTGA	3 cut(s)	1108, 1222, 1229
Hpy166II	GTNNAC	1 cut(s)	1099
Hpy188I	TCNGA	6 cut(s)	802, 871, 877, 922, 1018, 1183
Hpy188III	TCNNGA	5 cut(s)	191, 620, 781, 847, 1225
Hpy8I	GTNNAC	1 cut(s)	1099
HpyAV	CCTTC	5 cut(s)	72, 79, 159, 166, 1060
HpyCH4III	ACNGT	2 cut(s)	296, 608
HpyCH4IV	ACGT	2 cut(s)	229, 304
HpyCH4V	TGCA	6 cut(s)	168, 513, 539, 695, 902, 1123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	5 cut(s)	494, 812, 868, 919, 1040
HpySE526I	ACGT	2 cut(s)	229, 304
Hsp92II	CATG	8 cut(s)	41, 172, 784, 799, 885, 1117, 1123, 1228
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	2 cut(s)	262, 1116
Kzo9I	GATC	5 cut(s)	262, 590, 802, 877, 1116
LmnI	GCTCC	3 cut(s)	29, 38, 448
LweI	GCATC	2 cut(s)	897, 1080
MaeI	CTAG	3 cut(s)	468, 581, 806
MaeII	ACGT	2 cut(s)	229, 304
MaeIII	GTNAC	3 cut(s)	70, 602, 1075
MalI	GATC	5 cut(s)	264, 592, 804, 879, 1118
MbiI	CCGCTC	1 cut(s)	1168
MboI	GATC	5 cut(s)	262, 590, 802, 877, 1116
MboII	GAAGA	6 cut(s)	206, 235, 248, 600, 694, 1075
MhlI	GDGCHC	3 cut(s)	26, 301, 405
MlsI	TGGCCA	2 cut(s)	5, 985
MluCI	AATT	9 cut(s)	57, 210, 611, 818, 894, 946, 1055, 1156, 1238
MluNI	TGGCCA	2 cut(s)	5, 985
MmeI	TCCRAC	2 cut(s)	300, 619
MnlI	CCTC	8 cut(s)	37, 166, 211, 283, 431, 536, 542, 875
Mox20I	TGGCCA	2 cut(s)	5, 985
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	5, 985
MseI	TTAA	6 cut(s)	387, 486, 909, 995, 1005, 1243
MslI	CAYNNNNRTG	1 cut(s)	1118
Msp20I	TGGCCA	2 cut(s)	5, 985
MspA1I	CMGCKG	1 cut(s)	1105
MspI	CCGG	3 cut(s)	77, 127, 786
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	30
NcoI	CCATGG	2 cut(s)	37, 881
NdeII	GATC	5 cut(s)	262, 590, 802, 877, 1116
NlaIII	CATG	8 cut(s)	41, 172, 784, 799, 885, 1117, 1123, 1228
NlaIV	GGNNCC	3 cut(s)	125, 298, 444
NmuCI	GTSAC	1 cut(s)	70
NruI	TCGCGA	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	1 cut(s)	799
PagI	TCATGA	2 cut(s)	780, 1224
PfeI	GAWTC	2 cut(s)	850, 872
PkrI	GCNGC	2 cut(s)	342, 1167
PpuMI	RGGWCCY	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	768
Psp124BI	GAGCTC	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	973
PspN4I	GGNNCC	3 cut(s)	125, 298, 444
PspPI	GGNCC	4 cut(s)	563, 617, 1108, 1163
PspPPI	RGGWCCY	1 cut(s)	563
PstNI	CAGNNNCTG	1 cut(s)	875
PvuII	CAGCTG	1 cut(s)	1105
RruI	TCGCGA	1 cut(s)	192
RsaI	GTAC	5 cut(s)	125, 520, 966, 1196, 1205
RsaNI	GTAC	5 cut(s)	124, 519, 965, 1195, 1204
RseI	CAYNNNNRTG	1 cut(s)	1118
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	6 cut(s)	387, 486, 909, 995, 1005, 1243
SatI	GCNGC	2 cut(s)	341, 1166
Sau3AI	GATC	5 cut(s)	262, 590, 802, 877, 1116
Sau96I	GGNCC	4 cut(s)	563, 617, 1108, 1163
SduI	GDGCHC	3 cut(s)	26, 301, 405
SfaNI	GCATC	2 cut(s)	897, 1080
SinI	GGWCC	3 cut(s)	563, 617, 1108
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	9 cut(s)	57, 210, 611, 818, 894, 946, 1055, 1156, 1238
SsiI	CCGC	6 cut(s)	139, 341, 415, 457, 653, 1166
SspI	AATATT	1 cut(s)	858
SspMI	CTAG	3 cut(s)	468, 581, 806
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	2 cut(s)	37, 881
TaaI	ACNGT	2 cut(s)	296, 608
TaiI	ACGT	2 cut(s)	232, 307
TaqI	TCGA	4 cut(s)	288, 597, 846, 891
TaqII	GACCGA	1 cut(s)	583
TasI	AATT	9 cut(s)	57, 210, 611, 818, 894, 946, 1055, 1156, 1238
TatI	WGTACW	2 cut(s)	1194, 1203
TauI	GCSGC	2 cut(s)	343, 1168
TfiI	GAWTC	2 cut(s)	850, 872
Tru1I	TTAA	6 cut(s)	387, 486, 909, 995, 1005, 1243
Tru9I	TTAA	6 cut(s)	387, 486, 909, 995, 1005, 1243
TscAI	CASTG	1 cut(s)	613
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	185, 695, 746, 1241
TspGWI	ACGGA	2 cut(s)	413, 600
TspRI	CASTG	1 cut(s)	613
VpaK11BI	GGWCC	3 cut(s)	563, 617, 1108
XapI	RAATTY	5 cut(s)	57, 611, 818, 894, 946
XceI	RCATGY	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	966
XspI	CTAG	3 cut(s)	468, 581, 806
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.