Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002296.1

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

67767 .. 68885

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002296.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggccagcagcaacaaccagagctcctcaagctcccatggtaaaaccctttacaaaattccttgttgggtcacaccggataagaaggagtttcacaatagaacaatggagttccttacgtggtaccggaagtctaaccgcaccttgccttccccctccaataaatgcatgaaggtcaaagatatgtcgcgcgaagaagtattggagaaaattagggaggagaagaaacgtattgaagatgattgttcctttgagttggttgatcaatcggcctccaacaaaatgttcgatggcggtgcccaacgtttagttctaaaagacggcaaaaaactttacaagccgcaaaaggctacaaaagaagcctatatatggtcgtgttctaaatgttgcactcgtaccagcagcctcaatgtcattgcaggagatagaggctttgtcataggtccttttactttcaatctagtcggaagatcggtcgattgtaacagtgaatttggtccagataataaggtcagggttggacaagtcgttccgccttgtataagttctgttagtgatatgaagaacaatggtgcaaagtacgtgttaggagtggaaagtgtttctgcttatcaaagattgacgggggacaactttcataatgattataagtgtataatcatgaccggaaagggaatgtctgatctagcacgtagagaattcgcaaagtatataatggacacgttcgagattccaatatttctcctctcagattctgattcatggggcatcgaaatttatgcagtctttaaatatggctcagaaagtatggcatttgatagtgaaaatttggctaacccattggtacattggctgggtgtctggccaaccgacttaaccacacttaaaacaccatccgagaagttgagttgcgatgacctgagaaaagcaagaaaattgttgaaggagtttgtaacaagtgatgagatgctggtgaaccagtggaccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

330

Amino Acids

37.45

Weight (kDa)

8.55

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	123, 296
AccII	CGCG	2 cut(s)	190, 192
AciI	CCGC	4 cut(s)	139, 294, 341, 533
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	3, 863
AcsI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
AfaI	GTAC	4 cut(s)	125, 397, 581, 846
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	2 cut(s)	582, 720
AgsI	TTSAA	3 cut(s)	236, 457, 943
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 294, 301, 326
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	2 cut(s)	24, 33
AluI	AGCT	2 cut(s)	24, 33
Alw21I	GWGCWC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	3, 270, 863
ApeKI	GCWGC	2 cut(s)	9, 402
ApoI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	443, 497, 984
AsuHPI	GGTGA	1 cut(s)	985
AvaII	GGWCC	3 cut(s)	443, 497, 984
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	2 cut(s)	5, 865
BanI	GGYRCC	2 cut(s)	123, 296
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	21, 414
BccI	CCATC	2 cut(s)	284, 901
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	4 cut(s)	278, 312, 761, 795
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	2 cut(s)	461, 686
BisI	GCNGC	3 cut(s)	10, 341, 403
BlsI	GCNGC	3 cut(s)	11, 342, 404
Bme18I	GGWCC	3 cut(s)	443, 497, 984
BmgT120I	GGNCC	3 cut(s)	443, 497, 984
BmiI	GGNNCC	2 cut(s)	125, 298
BmsI	GCATC	2 cut(s)	777, 957
BpuEI	CTTGAG	1 cut(s)	13
BsaAI	YACGTR	3 cut(s)	120, 583, 692
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	3 cut(s)	76, 126, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	893
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	762, 813, 911
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	3 cut(s)	16, 233, 734
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	21, 414
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	2 cut(s)	190, 192
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	5, 272, 865
BshNI	GGYRCC	2 cut(s)	123, 296
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	77, 127, 666
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	5, 272, 865
Bsp1286I	GDGCHC	2 cut(s)	26, 301
Bsp143I	GATC	3 cut(s)	262, 470, 682
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	4 cut(s)	139, 294, 341, 533
BspANI	GGCC	3 cut(s)	5, 272, 865
BspCNI	CTCAG	3 cut(s)	761, 812, 912
BspFNI	CGCG	2 cut(s)	190, 192
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	125, 298
BspT107I	GGYRCC	2 cut(s)	123, 296
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	979
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	262, 470, 682
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	488
BstBAI	YACGTR	3 cut(s)	120, 583, 692
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	748, 799, 920
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	893
BstFNI	CGCG	2 cut(s)	190, 192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	265, 473, 685
BstMBI	GATC	3 cut(s)	262, 470, 682
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	2 cut(s)	190, 192
BstV1I	GCAGC	2 cut(s)	21, 414
BsuRI	GGCC	3 cut(s)	5, 272, 865
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	927
BtsCI	GGATG	1 cut(s)	893
BtsIMutI	CAGTG	2 cut(s)	493, 986
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	443, 497, 984
Csp6I	GTAC	4 cut(s)	124, 396, 580, 845
CviAII	CATG	5 cut(s)	38, 169, 661, 762, 990
CviQI	GTAC	4 cut(s)	124, 396, 580, 845
DdeI	CTNAG	3 cut(s)	748, 799, 920
DpnI	GATC	3 cut(s)	264, 472, 684
DpnII	GATC	3 cut(s)	262, 470, 682
DraI	TTTAAA	1 cut(s)	790
EaeI	YGGCCR	2 cut(s)	3, 863
EciI	GGCGGA	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	3 cut(s)	443, 497, 984
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	41, 172, 664, 765, 993
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	37, 168, 660, 761, 989
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	10, 341, 403
FokI	GGATG	1 cut(s)	880
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	10, 341, 403
FspBI	CTAG	2 cut(s)	461, 686
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	10, 341, 403
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	3 cut(s)	5, 272, 865
HapII	CCGG	3 cut(s)	77, 127, 666
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	41, 172, 664, 765, 993
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	730, 752, 758
HpaII	CCGG	3 cut(s)	77, 127, 666
HphI	GGTGA	1 cut(s)	985
Hpy166II	GTNNAC	2 cut(s)	976, 984
Hpy188I	TCNGA	6 cut(s)	467, 682, 751, 757, 802, 898
Hpy188III	TCNNGA	3 cut(s)	500, 661, 727
Hpy8I	GTNNAC	2 cut(s)	976, 984
HpyAV	CCTTC	4 cut(s)	79, 159, 166, 937
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
HpyCH4V	TGCA	5 cut(s)	168, 390, 419, 575, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	3 cut(s)	748, 799, 920
HpySE526I	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
Hsp92II	CATG	5 cut(s)	41, 172, 664, 765, 993
HspAI	GCGC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	262, 470, 682
LmnI	GCTCC	2 cut(s)	29, 38
Lsp1109I	GCAGC	2 cut(s)	21, 414
LweI	GCATC	2 cut(s)	777, 957
MaeI	CTAG	2 cut(s)	461, 686
MaeII	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
MaeIII	GTNAC	3 cut(s)	70, 482, 952
MalI	GATC	3 cut(s)	264, 472, 684
MboI	GATC	3 cut(s)	262, 470, 682
MboII	GAAGA	5 cut(s)	206, 235, 248, 480, 574
MhlI	GDGCHC	2 cut(s)	26, 301
MlsI	TGGCCA	2 cut(s)	5, 865
MluCI	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
MluNI	TGGCCA	2 cut(s)	5, 865
MmeI	TCCRAC	3 cut(s)	300, 445, 499
MnlI	CCTC	7 cut(s)	37, 166, 211, 283, 416, 422, 755
Mox20I	TGGCCA	2 cut(s)	5, 865
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	5, 865
MseI	TTAA	3 cut(s)	789, 875, 885
Msp20I	TGGCCA	2 cut(s)	5, 865
MspI	CCGG	3 cut(s)	77, 127, 666
MvnI	CGCG	2 cut(s)	190, 192
MwoI	GCNNNNNNNGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	262, 470, 682
NlaIII	CATG	5 cut(s)	41, 172, 664, 765, 993
NlaIV	GGNNCC	2 cut(s)	125, 298
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	170
PagI	TCATGA	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	730, 752, 758
PkrI	GCNGC	3 cut(s)	11, 342, 404
Ppu21I	YACGTR	3 cut(s)	120, 583, 692
PpuMI	RGGWCCY	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	853
PspN4I	GGNNCC	2 cut(s)	125, 298
PspPI	GGNCC	3 cut(s)	443, 497, 984
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	755
RsaI	GTAC	4 cut(s)	125, 397, 581, 846
RsaNI	GTAC	4 cut(s)	124, 396, 580, 845
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	789, 875, 885
SatI	GCNGC	3 cut(s)	10, 341, 403
Sau3AI	GATC	3 cut(s)	262, 470, 682
Sau96I	GGNCC	3 cut(s)	443, 497, 984
SduI	GDGCHC	2 cut(s)	26, 301
SfaNI	GCATC	2 cut(s)	777, 957
SinI	GGWCC	3 cut(s)	443, 497, 984
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
SsiI	CCGC	4 cut(s)	139, 294, 341, 533
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	2 cut(s)	461, 686
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	6 cut(s)	122, 232, 307, 585, 694, 725
TaqI	TCGA	4 cut(s)	288, 477, 726, 771
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	730, 752, 758
Tru1I	TTAA	3 cut(s)	789, 875, 885
Tru9I	TTAA	3 cut(s)	789, 875, 885
TscAI	CASTG	2 cut(s)	493, 986
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	9, 402
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	185, 575, 626, 750
TspRI	CASTG	2 cut(s)	493, 986
VpaK11BI	GGWCC	3 cut(s)	443, 497, 984
XapI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XspI	CTAG	2 cut(s)	461, 686
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.